Gene
RNA
| Item | Value |
|---|---|
| gene id | sema3b |
| gene name | LOC106566773 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 55166763 ~ 55255352 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: semaphorin-3B |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036947324.1 | False | 6532 | mRNA | 0.48 | 18 | 55166763 | 55209300 |
| XM_036947323.1 | False | 6208 | mRNA | 0.48 | 18 | 55166763 | 55255351 |
| XM_036947325.1 | False | 6203 | mRNA | 0.48 | 18 | 55166763 | 55255352 |
| TU1587781 | True | 1260 | lncRNA | 0.38 | 1 | 55166779 | 55168038 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:dkey-20d21.12 | LOC106566776 | coding | downstream | 208774 | 54946478 ~ 54957989 (-) |
| LOC110491107 | NA | coding | downstream | 526049 | 54639471 ~ 54640714 (-) |
| LOC118936330 | NA | coding | downstream | 530887 | 54635385 ~ 54635876 (-) |
| LOC110492306 | LOC106566792 | coding | downstream | 710747 | 54280345 ~ 54456016 (-) |
| LOC110491105 | LOC106566796 | coding | downstream | 929827 | 54163558 ~ 54236936 (-) |
| actr8 | actr8 | coding | upstream | 94792 | 55350144 ~ 55372295 (-) |
| LOC110492331 | LOC106566684 | coding | upstream | 120383 | 55375735 ~ 55383021 (-) |
| LOC110491111 | LOC106566685 | coding | upstream | 142285 | 55397637 ~ 55517109 (-) |
| LOC110492334 | dkga | coding | upstream | 313025 | 55568377 ~ 55582222 (-) |
| LOC110492337 | sgk2 | coding | upstream | 340217 | 55595569 ~ 55607324 (-) |
| G1390253 | NA | non-coding | downstream | 3895 | 55162523 ~ 55162868 (-) |
| G1390252 | NA | non-coding | downstream | 6113 | 55160368 ~ 55160650 (-) |
| G1390242 | NA | non-coding | downstream | 23521 | 55142909 ~ 55143242 (-) |
| G1390241 | NA | non-coding | downstream | 24274 | 55142208 ~ 55142489 (-) |
| G1390240 | NA | non-coding | downstream | 26340 | 55140080 ~ 55140423 (-) |
| G1390301 | NA | non-coding | upstream | 14839 | 55270191 ~ 55270431 (-) |
| G1390303 | NA | non-coding | upstream | 20229 | 55275581 ~ 55275802 (-) |
| G1390312 | NA | non-coding | upstream | 33359 | 55288711 ~ 55288981 (-) |
| G1390346 | NA | non-coding | upstream | 61248 | 55316600 ~ 55316859 (-) |
| G1390350 | NA | non-coding | upstream | 62315 | 55317667 ~ 55317975 (-) |
| G1390030 | ifrd2 | other | downstream | 180500 | 54984818 ~ 54986263 (-) |
| G1389763 | NA | other | downstream | 621520 | 54544728 ~ 54545243 (-) |
| LOC110492299 | LOC106566805 | other | downstream | 1433848 | 53730164 ~ 53757019 (-) |
| G1388236 | NA | other | downstream | 2133842 | 53031932 ~ 53032921 (-) |
| LOC110492250 | LOC106566852 | other | downstream | 2594456 | 52566433 ~ 52577143 (-) |
| LOC110492352 | nua4l | other | upstream | 568807 | 55824155 ~ 55826646 (-) |
| G1391586 | NA | other | upstream | 809151 | 56064503 ~ 56064862 (-) |
| G1391624 | NA | other | upstream | 970062 | 56225414 ~ 56226061 (-) |
| LOC110492371 | adcy6 | other | upstream | 1025700 | 56240763 ~ 56293503 (-) |
| G1391796 | LOC100286403 | other | upstream | 1168920 | 56424272 ~ 56437279 (-) |
