LOC110492331 (LOC106566684)


Basic Information

Item Value
gene id LOC110492331
gene name LOC106566684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55375735 ~ 55383021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566552.2
CCAACCTATATAACCAAGGGGTTCACAGAGTGATCGTCAGTAGGCGGACGGATTTGGTGTTCTCAATAGTTTATTATATAACCCTTTCACGGGATATTTAGCCATTTTGCAACTACAGATGAATATGTTATCATTGTTTTCAGTCATGAGGACCTTGCTGTTGATTATACTCTCTAAATTACTTACTGCTCAGCCGTCACCCACAATTAGTGTTACATGTGAGGAATCAGAAGATGTGACACCACCGGAATGGATGGAGATTCCTCAGGCCTGTCCTTCTTTTCTGGTCGCACTCAAAGTTGCTGTTCTGCCGGAAGACTTTGGGGCTATTCGGCTGAACATAAGTTGGGCCATCAACATCGACAAAAGCATTTACTATCTCACAGGAACTTGGATCGATATAGATAGTGATACATACCGCTGTCGGTATGAACCACCTTTCGAAGAAGTTGACCTCAGGGGTCTCGAACAGCTGTGGTTCTATTACCTTGCACCTGCAAAACCAGGTGATCCGATCATCTCTGCTTACAATCTTCCGAATCCGGCAGATGGCGACTATTCCAAGTTTACGACATGTTATGTACCGTATGCGACATCAAATGACGACACAGCTGAGTTGGCTTGGCCTACTTCAAACCCCACTGTGATGCCCATATCTGTTACCACCCGTAATGATGATGAGGGGAAACCAGCAAGCCTTCCAATAGTCTATCTTGGATGCTTAGCTGGGCTCGTGGTACTGGTGGcttgctctctcactctgtATCAACTGTATAGAAGGCACTCAAATTCCCACTTCACTGAGCTGCCGAAGGCAACTGAGGTCACTGTGTCGGTGCTGGTAGTGTACCCTGCAGAAAACCCTGTCTTCCAGAGAGCTGTGCTAGCTTTTGCTGAGTTCCTCCAGTGGCATGGTGACTGCCAGGTGGCTATCGACATGTGGCAGCATGGCAGGCTGGCAGAGCAGGGCCCGATGCGCTGGCTAGCAGATCAAGCCAAATCCGTAGCCAGGGTGATGGTTGTAAGCCCACAGCCCAAACACTGCCACACTGGCCCAGGGGAACACACAGTACCAGCCGCGGCTCATGACCTGTTTCCTCTGGTGCTCAACATGGTGGCAAGCTACGCTCAGTGCCCCAATGAGCTGGCCAAGTTCTGGTTGGTGCACCTAGGCAAGGCCCCGGAGAGGAGCGGCCTACCTGTGGAATTGACATCCTGTAGGGAATTTAGTCTGAACAGGGACTTGGAGAAACTGTGTAGACACTTGCATCAGCAGGGCTCCAAAAGACCAGGGTTAATGTTCAGATCAGGGTTGGCCTATGGGGAGAAGGCGACAGGGAAGCTGAAAGAGGCTGTGCAGCAGTTAGAGGCATGGCAATGCTCTCATCCAGGAGGTGCAGGGGAGGCAGCTCCTTTGACCAAATTGATGGCTAGACTGTAAGAACCTGATGATGCTGGTGTGATGACAAATCCAGAGCTTAAATAGTAATGTGAAAATAATCTAAGTAAAAACTCTCTTTTGACCACTTGTAGAACGGTGGGACTGCAAAAATTAGGGCATGCTAACTTTTCTCACTTAGCTTTAAGATTGCTTTTTAAATAGTTGAATATGTTATTTTTCATCAAATGTTTCTGTTTTGGAAATGAAACAAATATTCTATGGTGTTGACATTTTTTATATACTTATTGAATGTTTTGTTTATGTAAATAAATACTTGAATCTAA
>XM_021566555.2
CCAACCTATATAACCAAGGGGTTCACAGAGTGATCGTCAGTAGGCGGACGGATTTGGTGTTCTCAATAGTTTATTATATAACCCTTTCACGGGATATTTAGCCATTTTGCAACTACAGATGAATATGTTATCATTGTTTTCAGTCATGAGGACCTTGCTGTTGATTATACTCTCTAAATTACTTACTGCTCAGCCGTCACCCACAATTTGACACCACCGGAATGGATGGAGATTCCTCAGGCCTGTCCTTCTTTTCTGGTCGCACTCAAAGTTGCTGTTCTGCCGGAAGACTTTGGGGCTATTCGGCTGAACATAAGTTGGGCCATCAACATCGACAAAAGCATTTACTATCTCACAGGAACTTGGATCGATATAGATAGTGATACATACCGCTGTCGGTATGAACCACCTTTCGAAGAAGTTGACCTCAGGGGTCTCGAACAGCTGTGGTTCTATTACCTTGCACCTGCAAAACCAGGTGATCCGATCATCTCTGCTTACAATCTTCCGAATCCGGCAGATGGCGACTATTCCAAGTTTACGACATGTTATGTACCGTATGCGACATCAAATGACGACACAGCTGAGTTGGCTTGGCCTACTTCAAACCCCACTGTGATGCCCATATCTGTTACCACCCGTAATGATGATGAGGGGAAACCAGCAAGCCTTCCAATAGTCTATCTTGGATGCTTAGCTGGGCTCGTGGTACTGGTGGcttgctctctcactctgtATCAACTGTATAGAAGGCACTCAAATTCCCACTTCACTGAGCTGCCGAAGGCAACTGAGGTCACTGTGTCGGTGCTGGTAGTGTACCCTGCAGAAAACCCTGTCTTCCAGAGAGCTGTGCTAGCTTTTGCTGAGTTCCTCCAGTGGCATGGTGACTGCCAGGTGGCTATCGACATGTGGCAGCATGGCAGGCTGGCAGAGCAGGGCCCGATGCGCTGGCTAGCAGATCAAGCCAAATCCGTAGCCAGGGTGATGGTTGTAAGCCCACAGCCCAAACACTGCCACACTGGCCCAGGGGAACACACAGTACCAGCCGCGGCTCATGACCTGTTTCCTCTGGTGCTCAACATGGTGGCAAGCTACGCTCAGTGCCCCAATGAGCTGGCCAAGTTCTGGTTGGTGCACCTAGGCAAGGCCCCGGAGAGGAGCGGCCTACCTGTGGAATTGACATCCTGTAGGGAATTTAGTCTGAACAGGGACTTGGAGAAACTGTGTAGACACTTGCATCAGCAGGGCTCCAAAAGACCAGGGTTAATGTTCAGATCAGGGTTGGCCTATGGGGAGAAGGCGACAGGGAAGCTGAAAGAGGCTGTGCAGCAGTTAGAGGCATGGCAATGCTCTCATCCAGGAGGTGCAGGGGAGGCAGCTCCTTTGACCAAATTGATGGCTAGACTGTAAGAACCTGATGATGCTGGTGTGATGACAAATCCAGAGCTTAAATAGTAATGTGAAAATAATCTAAGTAAAAACTCTCTTTTGACCACTTGTAGAACGGTGGGACTGCAAAAATTAGGGCATGCTAACTTTTCTCACTTAGCTTTAAGATTGCTTTTTAAATAGTTGAATATGTTATTTTTCATCAAATGTTTCTGTTTTGGAAATGAAACAAATATTCTATGGTGTTGACATTTTTTATATACTTATTGAATGTTTTGTTTATGTAAATAAATACTTGAATCTAA
>XM_036947326.1
CCAACCTATATAACCAAGGGGTTCACAGAGTGATCGTCAGTAGGCGGACGGATTTGGTGTTCTCAATAGTTTATTATATAACCCTTTCACGGGATATTTAGCCATTTTGCAACTACAGATGAATATGTTATCATTGTTTTCAGTCATGAGGACCTTGCTGTTGATTATACTCTCTAAATTACTTACTGCTCAGCCGTCACCCACAATTAGTGTTACATGTGAGGAATCAGAAGATGGTGAGTTAGCCCAGGGATGGTTCACTCAGATTACaatattatttatttgtgttcttACCTTGAATTATGGTGACAAGGATAGACTGTAATCCACAAGCTGTCAAATCAGTCTACTAATCCATAGACTGCTTTCAGGGTGAGGAAATAATATTTTAATGACCTGTGCAAAGGTATGCTCAATGCAATCTTCCTTAAGAGGGTTTACCTTATTCCTATTAAAGCAGTGGTTAGCAAGTCTGTGTTTTGTAGACCTGCTGCTGTTCGCTACATTGGTGTCAGGAGTGGGATGCTGTCATTTATTGATGGGGTATTTTTTCCCCAAGTGACACCACCGGAATGGATGGAGATTCCTCAGGCCTGTCCTTCTTTTCTGGTCGCACTCAAAGTTGCTGTTCTGCCGGAAGACTTTGGGGCTATTCGGCTGAACATAAGTTGGGCCATCAACATCGACAAAAGCATTTACTATCTCACAGGAACTTGGATCGATATAGATAGTGATACATACCGCTGTCGGTATGAACCACCTTTCGAAGAAGTTGACCTCAGGGGTCTCGAACAGCTGTGGTTCTATTACCTTGCACCTGCAAAACCAGGTGATCCGATCATCTCTGCTTACAATCTTCCGAATCCGGCAGATGGCGACTATTCCAAGTTTACGACATGTTATGTACCGTATGCGACATCAAATGACGACACAGCTGAGTTGGCTTGGCCTACTTCAAACCCCACTGTGATGCCCATATCTGTTACCACCCGTAATGATGATGAGGGGAAACCAGCAAGCCTTCCAATAGTCTATCTTGGATGCTTAGCTGGGCTCGTGGTACTGGTGGcttgctctctcactctgtATCAACTGTATAGAAGGCACTCAAATTCCCACTTCACTGAGCTGCCGAAGGCAACTGAGGTCACTGTGTCGGTGCTGGTAGTGTACCCTGCAGAAAACCCTGTCTTCCAGAGAGCTGTGCTAGCTTTTGCTGAGTTCCTCCAGTGGCATGGTGACTGCCAGGTGGCTATCGACATGTGGCAGCATGGCAGGCTGGCAGAGCAGGGCCCGATGCGCTGGCTAGCAGATCAAGCCAAATCCGTAGCCAGGGTGATGGTTGTAAGCCCACAGCCCAAACACTGCCACACTGGCCCAGGGGAACACACAGTACCAGCCGCGGCTCATGACCTGTTTCCTCTGGTGCTCAACATGGTGGCAAGCTACGCTCAGTGCCCCAATGAGCTGGCCAAGTTCTGGTTGGTGCACCTAGGCAAGGCCCCGGAGAGGAGCGGCCTACCTGTGGAATTGACATCCTGTAGGGAATTTAGTCTGAACAGGGACTTGGAGAAACTGTGTAGACACTTGCATCAGCAGGGCTCCAAAAGACCAGGGTTAATGTTCAGATCAGGGTTGGCCTATGGGGAGAAGGCGACAGGGAAGCTGAAAGAGGCTGTGCAGCAGTTAGAGGCATGGCAATGCTCTCATCCAGGAGGTGCAGGGGAGGCAGCTCCTTTGACCAAATTGATGGCTAGACTGTAAGAACCTGATGATGCTGGTGTGATGACAAATCCAGAGCTTAAATAGTAATGTGAAAATAATCTAAGTAAAAACTCTCTTTTGACCACTTGTAGAACGGTGGGACTGCAAAAATTAGGGCATGCTAACTTTTCTCACTTAGCTTTAAGATTGCTTTTTAAATAGTTGAATATGTTATTTTTCATCAAATGTTTCTGTTTTGGAAATGAAACAAATATTCTATGGTGTTGACATTTTTTATATACTTATTGAATGTTTTGTTTATGTAAATAAATACTTGAATCTAA
>XM_036947327.1
ATCCAACCTATATAACCAAGGGGTTCACAGAGTGATCGTCAGTAGGCGGACGGATTTGGTGTTCTCAATAGTTTATTATATAACCCTTTCACGGGATATTTAGCCATTTTGCAACTACAGATGAATATGTTATCATTGTTTTCAGTCATGAGGACCTTGCTGTTGATTATACTCTCTAAATTACTTACTGCTCAGCCGTCACCCACAATTAGTGTTACATGTGAGGAATCAGAAGATGGTGAGTTAGCCCAGGGATGGTTCACTCAGATTACaatattatttatttgtgttcttACCTTGAATTATGGTGACAAGGATAGACTGTAATCCACAAGCTGTCAAATCAGTCTACTAATCCATAGACTGCTTTCAGGGTGAGGAAATAATATTTTAATGACCTGTGCAAAGGTATGCTCAATGCAATCTTCCTTAAGAGGGTTTACCTTATTCCTATTAAAGCAGTGGTTAGCAAGTCTGTGTTTTGTAGACCTGCTGCTGTTCGCTACATTGGTGTCAGGAGTGGGATGCTGTCATTTATTGATGGGGTATTTTTTCCCCAAGTGACACCACCGGAATGGATGGAGATTCCTCAGGCCTGTCCTTCTTTTCTGGTCGCACTCAAAGTTGCTGTTCTGCCGGAAGACTTTGGGGCTATTCGGCTGAACATAAGTTGGGCCATCAACATCGACAAAAGCATTTACTATCTCACAGGAACTTGGATCGATATAGATAGTGATACATACCGCTGTCGGTATGAACCACCTTTCGAAGAAGTTGACCTCAGGGGTCTCGAACAGCTGTGGTTCTATTACCTTGCACCTGCAAAACCAGGTGATCCGATCATCTCTGCTTACAATCTTCCGAATCCGGCAGATGGCGACTATTCCAAGTTTACGACATGTTATGTACCGTATGCTGAGTTGGCTTGGCCTACTTCAAACCCCACTGTGATGCCCATATCTGTTACCACCCGTAATGATGATGAGGGGAAACCAGCAAGCCTTCCAATAGTCTATCTTGGATGCTTAGCTGGGCTCGTGGTACTGGTGGcttgctctctcactctgtATCAACTGTATAGAAGGCACTCAAATTCCCACTTCACTGAGCTGCCGAAGGCAACTGAGGTCACTGTGTCGGTGCTGGTAGTGTACCCTGCAGAAAACCCTGTCTTCCAGAGAGCTGTGCTAGCTTTTGCTGAGTTCCTCCAGTGGCATGGTGACTGCCAGGTGGCTATCGACATGTGGCAGCATGGCAGGCTGGCAGAGCAGGGCCCGATGCGCTGGCTAGCAGATCAAGCCAAATCCGTAGCCAGGGTGATGGTTGTAAGCCCACAGCCCAAACACTGCCACACTGGCCCAGGGGAACACACAGTACCAGCCGCGGCTCATGACCTGTTTCCTCTGGTGCTCAACATGGTGGCAAGCTACGCTCAGTGCCCCAATGAGCTGGCCAAGTTCTGGTTGGTGCACCTAGGCAAGGCCCCGGAGAGGAGCGGCCTACCTGTGGAATTGACATCCTGTAGGGAATTTAGTCTGAACAGGGACTTGGAGAAACTGTGTAGACACTTGCATCAGCAGGGCTCCAAAAGACCAGGGTTAATGTTCAGATCAGGGTTGGCCTATGGGGAGAAGGCGACAGGGAAGCTGAAAGAGGCTGTGCAGCAGTTAGAGGCATGGCAATGCTCTCATCCAGGAGGTGCAGGGGAGGCAGCTCCTTTGACCAAATTGATGGCTAGACTGTAAGAACCTGATGATGCTGGTGTGATGACAAATCCAGAGCTTAAATAGTAATGTGAAAATAATCTAAGTAAAAACTCTCTTTTGACCACTTGTAGAACGGTGGGACTGCAAAAATTAGGGCATGCTAACTTTTCTCACTTAGCTTTAAGATTGCTTTTTAAATAGTTGAATATGTTATTTTTCATCAAATGTTTCTGTTTTGGAAATGAAACAAATATTCTATGGTGTTGACATTTTTTATATACTTATTGAATGTTTTGTTTATGTAAATAAATACTTGAATCTAA

Function

NR:

description
interleukin-17 receptor D-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566552.2 False 1725 mRNA 0.47 9 55375735 55383019
XM_021566555.2 False 1697 mRNA 0.47 8 55375735 55383019
XM_036947326.1 False 2048 mRNA 0.46 8 55375735 55383019
XM_036947327.1 True 2029 mRNA 0.45 7 55375735 55383021

Neighbor

gene id symbol gene type direction distance location
actr8 actr8 coding downstream 3440 55350144 ~ 55372295 (-)
sema3b LOC106566773 coding downstream 120383 55166763 ~ 55255352 (-)
si:dkey-20d21.12 LOC106566776 coding downstream 417746 54946478 ~ 54957989 (-)
LOC110491107 NA coding downstream 735021 54639471 ~ 54640714 (-)
LOC118936330 NA coding downstream 739859 54635385 ~ 54635876 (-)
LOC110491111 LOC106566685 coding upstream 14616 55397637 ~ 55517109 (-)
LOC110492334 dkga coding upstream 185356 55568377 ~ 55582222 (-)
LOC110492337 sgk2 coding upstream 212548 55595569 ~ 55607324 (-)
LOC110492338 LOC106566690 coding upstream 226166 55609187 ~ 55626735 (-)
LOC110492341 LOC106571981 coding upstream 243894 55626915 ~ 55632905 (-)
G1390371 NA non-coding downstream 29674 55345795 ~ 55346061 (-)
G1390350 NA non-coding downstream 57760 55317667 ~ 55317975 (-)
G1390346 NA non-coding downstream 58876 55316600 ~ 55316859 (-)
G1390312 NA non-coding downstream 86754 55288711 ~ 55288981 (-)
G1390303 NA non-coding downstream 99933 55275581 ~ 55275802 (-)
G1390645 NA non-coding upstream 9669 55392690 ~ 55429824 (-)
G1390692 LOC106597055 non-coding upstream 79030 55462051 ~ 55462661 (-)
G1390752 NA non-coding upstream 146686 55529707 ~ 55530272 (-)
G1390754 LOC106566686 non-coding upstream 150182 55533203 ~ 55533715 (-)
G1390756 NA non-coding upstream 153718 55536739 ~ 55536983 (-)
G1390030 ifrd2 other downstream 389472 54984818 ~ 54986263 (-)
G1389763 NA other downstream 830492 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1642820 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2342814 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2803428 52566433 ~ 52577143 (-)
LOC110492352 nua4l other upstream 441138 55824155 ~ 55826646 (-)
G1391586 NA other upstream 681482 56064503 ~ 56064862 (-)
G1391624 NA other upstream 842393 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 898031 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 1041251 56424272 ~ 56437279 (-)

Expression


Co-expression Network