LOC110491111 (LOC106566685)


Basic Information

Item Value
gene id LOC110491111
gene name LOC106566685
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55397637 ~ 55517109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110491111
GTTGTAGAATGTGGACACTAAACGGCGTCGAGTGGCCTCAAAGAAGAGGGAGATGATATGGCGTTCGCTGTCGGGGTTCGAAGACACCGGGGGGCACAATATGCCAGCAGCACCAGAGCCCCTCCCCCTGGTGATACGCCGGCCCTCTGGTCAGAAAACCCCTCCCAGCCCGAGTCCTGCCCCCAGACCGGCACTATCTCCTGGCAGGCCGAGATCCATGCTGCTCGTAACTCCCAGGGCGACGTCTCCCAGAGCATGAGCGCCCGCAACTCTGTCCCTGGGGCCACGCCTGCACCGGTCGGCTCGTTGTCACAGAGGAAGAGGCAACAGTACGCCAAGAGCAAGAAGCAGGGCGGCTCCACCAACAGCAGGCCGCCCAGGGCCCTGTTCTGCCTCACCCTGAACAATCCCATCCGCAGAGCCTGCATCAGCCTCGTGGAGTGGAAACCCTTTGATATCTTTATACTGCTCTCTATTTTTGCCAACTGTGTGGCCTTAGCTGTTTACATTCCCTTCCCTGAGGACGACTCCAACTCCACCAACCACGACCTGgAAACAGTAGAATATGCCTTCCTGATCATCTTTACGATAGAGACCTTTCTGAAGATCATAGCGTATGGTTTAGTCATGCATCAGAACTCCTACGTAAGGAATGGCTGGAACATGCTAGATTTTGTCATTGTCATAGTAGGgTTGTTCAGTGTAGTTCTGGAGGTGATAACCAAAGAGGGTGATGCGGGGGCTCAGGGGGGTAAACCAGGAGGCTTTGACGTCAAGGCCCTCCGAGCATTCCGTGTGCTCCGCCCCCTCCGTCTTGTCTCAGGAGTACCCAgtTTACAGGTAGTGTTGAACGCCATCATTAAAGCCATGGTTCCTCTGCTCCACATCGCTCTGCTAGTCCTCTTCGTCATCATCATCTATGCCATCATCGGCCTGGAACTCTTCATCGGCAAGATGCACGCCACTTGCTACCTGGTGGGCACCGGCATTCTGGCAGAGGAGGAGCCTGTTCCGTGTGCAATGTCAGGCCATGGGCGCCAATGCATGATGAATGGGACTGTGTGTAGAGAGGGATGGCATGGCCCCAACGGTGGCATCACCAACTTTGACAACTTCCTGTTTGCCATGCTTACTGTTTTCCAGTGTATCACCATGGAGGGCTGGACTGATGTTCTCTACTGGATGAATGATGCCATGGGCTTTGAGTTGCCCTGGGTTTACTTCGTCAGTCTGGTCATCTTCGGCTCCTTCTTCGTTCTCAACCTGGTTCTGGGAGTTTTAAGCGGAGAGTTttccaaggagagagagaaggccaaGGCTCGTGGAGACTTCCAGAAGctgagagagaagcagcagcTGGAGGAGGATCTGAAGGGCTACCTGGACTGGATCACTCAGGCCGAGGACATCGACCCTGAGAATGACGAGGAGGGGGACGAGGAGGGGGGAAAACGCATCCCACCTGGCCAGCAGTGTggttcagagacagagacagaggtctAGGTTTTAAACAGGTTGGAAATAAATCTTCGGCGATGGCGTCGCTGGAACCGGTTCTGCCGCAGGAAGTGTCGTGTTGCCGTGAAGTCAGTGTCTTTCTATTGGCTGGTGATCATCCTGGTGTTTCTCAACACGCTCACCATCTCCTCAGAGCACTACAACCAGCCTGACTGGCTCACGGAAGTACAGGATGTGGCCAACAAGGTTCTGCTGGCTCTGTTTACGTGTGAGATGCTGGTGAAGATGTATAGTCTGGGCCTGCAGGCCTACTTCGTGTCTCTGTTCAACCGCTTCGACTGCTTCGTGGTGTGTGGCGGCATCGTGGAGACCATCCTGGTGGAGCTGGCCATCATGTCTCCCCTGGGCATCTCTGTGTTCCGCTGTGTCCGTCTGCTACGCATCTTCAAGGTCACACGCCACTGGGCATCTCTCAGTAACCTGGTGGCATCGCTGCTCAACTCCATGAAGTCCATCGCCTCcctcctgctcctgctcttcctcttcatcatcatcttctCTCTGTTGGGCATGCAGCTCTTCGGCGGCAAGTTCAACTTCGACGAGACGATAACTAAGAGGAGCACCTTCGACAACTTCCCCCAGGCACTACTCACAGTGTTTCAGATCCTGACAGGCGAGGATTGGAATGCTGTGATGTATGACGGCATCATGGCGTACGGTGGACCCTTCTCCTCAGGCATGGTCGTCTGCATCTACTTCATCATCCTCTTTGTCTGTGGAAACTACATCCTGCTGAACGTCTTCTTGGCCATCGCGGTTGACAACCTGGCAGATGCAGAGAGCCTGAACACAGCccaaaaggaggaagaggaggagaaggaaaggaagaagaGTGCCAGAGATGACACTGATAAGATGGAGGAGCTGAAACCTGAGGACCAAGATGGGGATCTCAAGGTTCcactggaggaggaagaggagaaggagccGTATCCCACTCCAGACACTCCAGTTGGTGATGATGACAATGATGATGATAATCTGCCAGAGGTTCCGGTTGGGCCACGCCCTCAAAGGCTGTCAGACCTCAGCATCAAGGAGAAGACTCCGCCCATCCCTGAGGGCAGTGCTTTCTTCATCTTCAGCCACACTAACCCAGTCCGGGTGGCCTGCCACAAGCTGATCAACCACCACATCTTCACCAACCTCATCCTGGTCTTCATCATGCTGAGCTCTGTGTCTCTGGCTGCTGAGGACCCCATACGGAACTTCTCTGCACGCAACATCATACTTGGTTATTTTGACTATGCTTTCACGGCAATCTTTACTGTTGAGATCCTGTTGAAGATGACAGCTTTTGGGGCTTTCCTCCATAAAGGAGCCTTCTGCAGGAACTACTTCAACCTGCTGGACCTACTGGTGGTTGGAGTCTCTCTGGTGTCCTTTGGCATTCAGTCATCTGCCATCTCTGTGGTGAAGATCTTGCGTGTGTTGAGGGTGTTGCGGCCCCTGAGGGCCATCAACAGAGCCAAGGGCCTCAAGCATGTGGTCCAGTGTGTATTTGTGGCCATCAGGACCATTGGCAACATCATGATCGTCACCACGCTGCTACAGTTCATGTTCGCCTGCATAGGAGTGCAGCTATTCAAGGGCAAGTTCTATCGCTGCACAGACGAGGCCAAGTCCAGCCCGGAGGAATGCAAaGGCACATACATCCTGTATAAGGATGGAGATACAGCGTTGCCTGCAGTTAGGGAGAGGATCTGGTACAACAGTGACTTCACCTTTGACAACGTCCTCATGGCCATGATGGCTCTGTTCACCGTCTCTACATTTGAAGGCTGGCCTGCTCTGCTGTACAAGGCCATCGACTCCAACCGAGAGAATATGGGTCCCATCTACAACTACCGCGTGGAGATCTCCATCTTCTTCATcatctacatcatcatcatcgccTTCTTCATGATGAACATCTTTGTCGGTTTCGTCATCGTCACCTTCCAggagcagggagagaaagagtacaAGAACTGTGAGCTGGACAAGAACCAGcgtCAGTGTGTGGAGTATGCTCTGAAGGCTCGTCCACTGAGAAGGTACATCCCTAAGAACCCCTACCAGTATAAGTTCTGGTATGTGGTCAACTCCACAGGCTTTGAGTACGTCATGTTCGTCCTCATCATCCTCAACACACTGTGTCTGGCCATCCAGCACTACGGCCAGTCTCACCTGTTCAACTATGCCATGGACATCCTCAACATGGTCTTCACTGGCGTCTTCACTGTGGAGATGATCTTTAAACTCATCGCCTTCAAACCCAGGGGGTATTTTGGGGATGCCTGGAACGTCTTCGATGCCCTGGTGGTGATCGGCAGCGTAGTAGACATCATTCTCACTCAGGTAGATACTAAGCTACTGAGCACTGTGGgtgttccacctctctctctctccctctctcagaacACCGAGGACAGCGCTCGCATCTCCATCACATTCTTCCGTCTGTTTCGAGTCATGCGATTGGTCAAGCTGCTCAGCAGAGGGGAGGGCATCCGAACGCTCCTGTGGACCTTCATTAAGTCCTTCCAGGCTCTTCCCTATGTTGCCCTTCTGATAGCCATGTTATTCTTCATCTATGCTGTTATTGGAATGCAGgtgtttggaaagaTTGCCTTGGTCGACCACACACAGATTAACCGAAACAACAACTTCCAGACCTTTCCTCAAGCTGTCCTGATGCTCTTcagGTGTGCTACAGGTGAGGCGTGGCAGGAGATCATGCTGGCATGTCTGCCAGGGAAGCTGTGTGACTCGGAGTCAGACTACAACCCTGGAGAGGAGAAAACCTGTGGCAGCGGATTCGCCATTATCTACTTCATCAGCTTCTACATGCTCTGCGCCTTcctgATCATCAACTTGTTTGTTGCTGTCATCATGGATAACTTTGACTATCTGACGCGTGATTGGTCCATTCTGGGCCCTCACCACCTGGATGAGTTTAAAAGGATCTGGTCTGAGTACGACCCTGAGGCCAAGGGCAGGATAAAGCATCTGGATGTGGTGACCTTGCTGAGACGTATCCAGCCCCCTCTAGGCTTCGGCAAGCTGTGTCCACACAGAGTGGCCTGCAAGAGACTGGTTGCAATGAACATGCCCCTGAACAGTGATGGCACGGTCATGTTCAATGCCACTCTGTTTGCCTTGGTGAGGACCGCTCTGAAGATCAAAACTGAAGGCAACTTGGAACAGGCCAATGAGGAGTTGCGAGCGGTCATCAAGAAGATCTGGAAGAGGACCAGCATGAAGCTGCTGGACCAAGTGGTGCCCCCTGCAGGCGATGACGAGGTAACCGTGGGGAAGTTCTATGCTACCTTCCTGATACAGGACTACTTCAGGAAATTCAAGAAACGCAAAGAGCAAGGCCTGGTGGGAAGACACTCATTCTCCAGCCTGAACTCCACCATCGCCCTCCAGGCTGGCCTCCGCACACTGCATGATATTGGGCCCGAAATTCGCCGAGTCATATCATGTGACCTGCAAGACGAGGGCCTTGTAGACATGAATGCAGAAGAAGATGACGAGGTGTCTAGGAGGAACGGCGTGCTGTTCGCCAACCACACCAATCACGTTAACGGGGACCACCGGGGTTCTGTCACCCAGCGGCCCCTCCAGGTCCCGCCTCCTTCCTGCCACGCATTCGTGGAGCCCTCTCAGGTTGGCTCTGAGGAAGGGGCTGGTGACCCCCACccctacaaccactactaccccAAATCCCCCATGTCCTCCAACGCCAACCTCAACAACGCCAACATCCCCACCCTGCCCTCCCTGCCCAAAGAGGGGCAGCGGTGCTGTCTCCGCCGCGAGCACTCGTCCGCTAATGGGGCACCCTCCTCCAGCTCGCACCGCAAGAGTGTTGACTTCGACACCCTCACCACGGTCCAGTCTGCAAGGAGGCTCTACTATGAGACCTACATTAGGTCAGAATCAGGGGGTGTTCTGTACCCAACCATCCGCAGAGAGAAGCCAGGGGGAGCGGACAGTGATGATGACAAGGGCTCAGGGGAATACTTCAGTGGAGAGGAGTACCAGGAGGACGACCTCATGTTGCACAAGGACAGGATGCCCCATAGGGAGTTTCAAGACCTTCAAACTGACTTGGACACAAATGCATCGAGGGGTTACCATCAACCGGATAGTCTCTATGACGACGACCAACAACCCATTTACCAAGATGGTGGGCGGTCGCCAAAGCGACGGTTGTTCCCCTCTACACCCCAGGCACCCCACAGACCCTCCTTCAACTTTGAGTGTCTGCGGAGACATAGCAGTCAGGATGATGACATCCCCTTGACCCCTTCCATTCCCCATCGAACAGCTCTACCCCTGCATCTGATGCAGCAACAGGTGATGGCAGTGGCTGGCCTGGACTCCAGCAGAGTCCAGCGTCTCTCTCCATCACGCTCTCTACGTTCCTGGGCCACGCCCCCCACCTCCCCCATTAGCAGGGACCACTCCCCATACTACACCCCCCTCATccagGTGGACTGGCGTGGTCCCGGCAGTGTGAGCAGCACCCCCGGCTCTGTGAGAAGAAGCTCCTGGTACACTGACGCCCCGGAAGCCCCTTTGAGCCTCACCTACTCCCCCTCTCAACTCCAGATCCCCCCAGAGTACCGCAGGCAGTACCACCAGAAGATAGGCAGTGCCAACAGCCTAGTAGAGGCCGTGTTGATTTCAGAAGGACTGGGGAAATACGCCAAGGACCCCAAATTTGTGGCGGCGACAAAGCATGAGATCGCGGACGCCTGCGAGATGACCATCGATGAGATGGAGAGTGCCGCCAGCAACCTGCTGAATGGCAGTATGGGTAATGGAGCGGGGGCAACCGGGGCCACGGACAAAGTGACGGCCACAAGCCTCAGGGACCGTAATCTCCATGACGACAGTGATGAGGAGCCGGACACGAGTGTGAAATGTGAAGAAGATCTGACTGATGAGATGATATGCATCAGCACCCTATAGCAGTCAGTCACATAGGCTGACATGGCACGCTATAGCATTCAGTCACATAGGCTGACATGGCACCCTATAGCATTCAGTCACATAGGCTGACATGGCACCCTATAGCATTCAGTCACATAggctgaaatggcaccctatagcaTTCAGTTACATAGGCTGACATGGCACCCTATAGCATTCAGTCACATAGGCTGACATGGCACCCTATAGCATTCAGTCACATAGGCTGCATTTGACATGGCACCCTATACCAtatgaagtgcactatatagggagagATGTGCCTTTTGGAGTGCCTTTCTTTCTGTGGAATTAATAGGTAGATGGAAACACTGCCAGCTGGAGAGaactgtagggatggagggacatGCTAAGGCTCCAACtatagaggagtggagggataCGCTAAGGATCCAACtacagaggagtggagggatggagggacacgCTAAGGATCCAACtacagaggagtggagggatggagggacacgCTAAGGATGCAACTACagtggagtggagggatggagggacacgCTAAGGCTCCAACtacagaggagtggagggatggagggacacgCTAAGGCTCCAACtacagaggagtggagggatggagggacacgCTAAGGCTCCAACTACagtggagtggagggatggagggacacgCTAAGGATCCAACTACAGTGGGATGGAGAG

Function

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X2

GO: NA

KEGG:

id description
K04851 CACNA1D, CAV1.3; voltage-dependent calcium channel L type alpha-1D

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110491111 True 7179 mRNA 0.54 48 55397637 55517109

Neighbor

gene id symbol gene type direction distance location
LOC110492331 LOC106566684 coding downstream 14616 55375735 ~ 55383021 (-)
actr8 actr8 coding downstream 25342 55350144 ~ 55372295 (-)
sema3b LOC106566773 coding downstream 142285 55166763 ~ 55255352 (-)
si:dkey-20d21.12 LOC106566776 coding downstream 439648 54946478 ~ 54957989 (-)
LOC110491107 NA coding downstream 756923 54639471 ~ 54640714 (-)
LOC110492334 dkga coding upstream 51268 55568377 ~ 55582222 (-)
LOC110492337 sgk2 coding upstream 78460 55595569 ~ 55607324 (-)
LOC110492338 LOC106566690 coding upstream 92078 55609187 ~ 55626735 (-)
LOC110492341 LOC106571981 coding upstream 109806 55626915 ~ 55632905 (-)
LOC110492339 rae1 coding upstream 116705 55633814 ~ 55638471 (-)
G1390371 NA non-coding downstream 51576 55345795 ~ 55346061 (-)
G1390350 NA non-coding downstream 79662 55317667 ~ 55317975 (-)
G1390346 NA non-coding downstream 80778 55316600 ~ 55316859 (-)
G1390312 NA non-coding downstream 108656 55288711 ~ 55288981 (-)
G1390303 NA non-coding downstream 121835 55275581 ~ 55275802 (-)
G1390752 NA non-coding upstream 12598 55529707 ~ 55530272 (-)
G1390754 LOC106566686 non-coding upstream 16094 55533203 ~ 55533715 (-)
G1390756 NA non-coding upstream 19630 55536739 ~ 55536983 (-)
G1390755 NA non-coding upstream 20082 55537191 ~ 55537704 (-)
G1390744 NA non-coding upstream 47421 55564530 ~ 55566248 (-)
G1390030 ifrd2 other downstream 411374 54984818 ~ 54986263 (-)
G1389763 NA other downstream 852394 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1664722 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2364716 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2825330 52566433 ~ 52577143 (-)
LOC110492352 nua4l other upstream 307050 55824155 ~ 55826646 (-)
G1391586 NA other upstream 547394 56064503 ~ 56064862 (-)
G1391624 NA other upstream 708305 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 763943 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 907163 56424272 ~ 56437279 (-)

Expression


Co-expression Network