LOC110492338 (LOC106566690)


Basic Information

Item Value
gene id LOC110492338
gene name LOC106566690
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55609187 ~ 55626735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566570.2
TTCTGTCTGAGTGACTGTGGAACACTGGAGATGATCAGCCAAGAAAAAATCAGCAGTGCTGAACCAGCAGTAATGGTGTCTGGGAAAATACCTGACTCCAAAAACAGGCCAACTAACAAAACAGCTCTGTGGGTGGTGTGGCTGTGGAACAAGAGAGGCCCATCAAGATTGAGCCTAAGACCCAGGGAGggccaggacaacaggagagctGTGATCCTATGGCACAGAGAACCTACCCAGAGCAGCTACGCAGGGAGCCTATGACTGACAAGAGGGGGGGAGGCACAGATAAGATTCCCGGGGGCAGGGTAGCATCTCTGGACCCTGAGCTGCTGAAACCcatgaagaagaggaagaggaaggactaCCTGAGTCCGTCAGAGGAAGAATCTGAGCTGGATGGAATGGATTACTTGAAGACAGAAAACAGACACAACAAAGCAGGTGCTGTTGAAGTCCATATGGATCTGTGGACATGGGGACAGTATCTGGAGGAGACCAAAGCAGTGGCAGCTCCGGCCAAACTCTTTCAAGAGTCTCAGAGAGTACCTCAGTGCAAAAGCAGCTTCCGCCAGGGCATGAAGTTAGAGGGCATCGACCCCCAGCACCCCTCCATGTACTTTGTTCTGACTGTGGCTGAGGTTTGTGGCTACAGGCTGCGTCTCCATTTTGACGGCTACTCAGACTGTCATGACTTCTGGGTAAATGCCAACTGCCCCGACATCCACCCGGCGGGATGGTGTGAGAGCACTGGACACAAACTCTACACCCCCAAAGGCTGCAAAGAGGAGGAGTTCTCCTGGGCCAGCTACCTGAAAATGAGTAAAGCACAAGTTGCCCCTAAAGAGGTGTTTGCCAGCCCTGGAAGAACGGATACGGAGTGTGGTTTTGAGGTGGGCATGAAGCTGGAGGCGGTTGACCGCATGAACCCCTCTCTCATTTGCGTGGCGACCGTGACCGACGTGGTGGACGACCGCTTCCTGGTTCACTTTGATAACTGGGACGACACGTATGACTACTGGTGTGATGCCAGCAGTCCATACATCCATCCTATTGGCTGGTGCCAAGAGAGGAGCCTCCCCCTAACGCCGCCTCAAGATTACCCAGACCCAGGCAGGTTCTCCTGGCCAAGGTACCTCGACGAGACTGGCTCTACCGCCGTGTCTGCTGAGGCTTTTAAAGTGCGTCCTGCCCATTGCTTCCAGGCTCAGATGAAGCTGGAGGTGGTGGACAAAAGGAGCCCCGGCCTGATACGGGTGGCCACAGTGGAGGAGGTCGACACCCACCGCATTAAGATCCATTTTGATGGCTGGAGTCATATGTATGATGAGTGGATGGACTCGGACCACCCTGACACCCACCCGGTCGGCTGGTGTGAGAGTACGGGTCACCCGCTAAAAATCCCTCCCCCTGAGTCCAACAAAACCCAACAGCTTGACCCCAGGGAACCTGCAACCACAGGCCAGTCCAGTTTCTCCTCCATGCCTTGCAAAGTAATCAACCACTCCAGATCCACAAAGTACAGCTTCCATCACAGGAAGTGTCCAACGCCTGGATGTGATGGCTCGGGTCATGTGACTGGGCGGTTCACAGCGCATCACTGTCTGTCAGGCTGCCCATTGGCTGAGCGAAACCAGGGCAGACTCAAAACCGACCTATCAGATACAGAGGGGAGCGGAGCCAAGCGGAACATCTTAATCTTTGGCCAAAGGACCAAAAAGTCCCGGTACCATGGCAGGATTGGTCGTCCCCCCAAGTATAGAAAAAGCCAGCACAGAGGTTACCAGACGATAGCCACAGAGGGTATGTGCCCGTCTCTGTTCATGTCTGCCCTGTCGGCCCACCCGGACCGAACCCTGTCTCTGTGCTGGGAGCAACACTGCAAACTGCTGCCAGGCGTCCAGGGCATCCATGCTACACAGGTGGCAGCATGGACCGTGGAGGAGGTCTTTGGATTTGTCCAGAAACTGACTGGTTGTGAAGAACAGGCCTGTGTCTTCAAAGAGGAAATGATTGACGGGGAGGCCTTCCTATTACTGACACAAACTGACATCGTCAAAATCCTGAACATCAAACTTGGTCCCGCCCTCAAGATCTCCAACGCCATTTTAATGTTCAAGAGTATTGACGAAGGCCTCAAGTGATCCTGTCCCCACTCGGCCAGAGACTCCGTGACGAATCATCATGTGCCAAAATCATCCAGAACCCTACCCCTGTTATGTGTTTGGTGTTCAGTAcccatcagagagagaacaggagagggggCTGAGAGTGGAAAAGAGATGGGGACAGaactgagaaagagaaagaaaaaaactgGGAAAAAGTGTAAGCAAATGTTTTTATAAGGTTGCTTCACTGCTCGTGCAATAAAATGAGTAAAATCTTAACTGAAAGTGTAAGCTTTTGTAATTTATGCAAAATATATGGAATTATTTATGTGGGATGATGTTTTACTGCAATTTTTTTGTCACAGATTTGAAATCCGGCGTGATTTTATGCTGCTGTTTCTTTACTTGGTCACTAGATACAGCATATGGACAGTTTCTAAGACCAGAAAAGGTTTAAAGTTTCTCAAGTATTGATCTTACGTGAGATAAATTCAAAATCATGTTTCAAAATATGAACTTTGTTTCGAACATTTGAAAAGGTTTACATTTTCACTCAGAAATATCAAGATATCTGGGGGATTTATTGTTTTGAATCATTTTTATATTTTATGTAGGTTTATGCACTGTATTTAAATATAATCTTAAAAGGGCTCCAGGATTCCTATAGCTATATTTCTCTCTGGTGGGCAAAACTGTATCACCATATTCTTGGATCAAAATCGTTCATTCCATATGTACAAATAAATGTCCAATTCAA
>XM_021566567.2
AGAAGAAACCGCTGGTAAGCTAAATTTAGTCCCAAATTGATCAGCTAATATGCATGTATATTGCTTTGACGTGCCTGCAATAAGCGCTACAGAATCCTGAAACTATAACGCTTGCAGATGAGGCAGTAAGTGAAGTCTGCCATGAGTGCCAAAGTGGAGCTGGATGTTTCAGCCAAAGAAGCAGATCCCAATCCTTCCAGTGATGCCCTCTCCTCCAATGACAGCCTGTCGAAGAAGACACACCCACAGACCACAGCACTCATCCTGCCAGCTCCTGTTCCCAGTACACAGAAGGTGGAGGTCTCTCCGGGTGCTGCTGAGGCAGGTAATGGAGCCACTGCTGGAGAGGTGGAAACCCCCACTATAGCCCCCCAGGTTGGGGGAGCCTGTAGCATCGTCCATGTACTGGAGTGGAAAGAAGGGATGGCCATCTTACCCAGCAGCAACCTTAAGTTCTGTCTGAGTGACTGTGGAACACTGGAGATGATCAGCCAAGAAAAAATCAGCAGTGCTGAACCAGCAGTAATGGTGTCTGGGAAAATACCTGACTCCAAAAACAGGCCAACTAACAAAACAGATATGGTGTCTCCTCTCAGCTCTGTGGGTGGTGTGGCTGTGGAACAAGAGAGGCCCATCAAGATTGAGCCTAAGACCCAGGGAGggccaggacaacaggagagctGTGATCCTATGGCACAGAGAACCTACCCAGAGCAGCTACGCAGGGAGCCTATGACTGACAAGAGGGGGGGAGGCACAGATAAGATTCCCGGGGGCAGGGTAGCATCTCTGGACCCTGAGCTGCTGAAACCcatgaagaagaggaagaggaaggactaCCTGAGTCCGTCAGAGGAAGAATCTGAGCTGGATGGAATGGATTACTTGAAGACAGAAAACAGACACAACAAAGCAGGTGCTGTTGAAGTCCATATGGATCTGTGGACATGGGGACAGTATCTGGAGGAGACCAAAGCAGTGGCAGCTCCGGCCAAACTCTTTCAAGAGTCTCAGAGAGTACCTCAGTGCAAAAGCAGCTTCCGCCAGGGCATGAAGTTAGAGGGCATCGACCCCCAGCACCCCTCCATGTACTTTGTTCTGACTGTGGCTGAGGTTTGTGGCTACAGGCTGCGTCTCCATTTTGACGGCTACTCAGACTGTCATGACTTCTGGGTAAATGCCAACTGCCCCGACATCCACCCGGCGGGATGGTGTGAGAGCACTGGACACAAACTCTACACCCCCAAAGGCTGCAAAGAGGAGGAGTTCTCCTGGGCCAGCTACCTGAAAATGAGTAAAGCACAAGTTGCCCCTAAAGAGGTGTTTGCCAGCCCTGGAAGAACGGATACGGAGTGTGGTTTTGAGGTGGGCATGAAGCTGGAGGCGGTTGACCGCATGAACCCCTCTCTCATTTGCGTGGCGACCGTGACCGACGTGGTGGACGACCGCTTCCTGGTTCACTTTGATAACTGGGACGACACGTATGACTACTGGTGTGATGCCAGCAGTCCATACATCCATCCTATTGGCTGGTGCCAAGAGAGGAGCCTCCCCCTAACGCCGCCTCAAGATTACCCAGACCCAGGCAGGTTCTCCTGGCCAAGGTACCTCGACGAGACTGGCTCTACCGCCGTGTCTGCTGAGGCTTTTAAAGTGCGTCCTGCCCATTGCTTCCAGGCTCAGATGAAGCTGGAGGTGGTGGACAAAAGGAGCCCCGGCCTGATACGGGTGGCCACAGTGGAGGAGGTCGACACCCACCGCATTAAGATCCATTTTGATGGCTGGAGTCATATGTATGATGAGTGGATGGACTCGGACCACCCTGACACCCACCCGGTCGGCTGGTGTGAGAGTACGGGTCACCCGCTAAAAATCCCTCCCCCTGAGTCCAACAAAACCCAACAGCTTGACCCCAGGGAACCTGCAACCACAGGCCAGTCCAGTTTCTCCTCCATGCCTTGCAAAGTAATCAACCACTCCAGATCCACAAAGTACAGCTTCCATCACAGGAAGTGTCCAACGCCTGGATGTGATGGCTCGGGTCATGTGACTGGGCGGTTCACAGCGCATCACTGTCTGTCAGGCTGCCCATTGGCTGAGCGAAACCAGGGCAGACTCAAAACCGACCTATCAGATACAGAGGGGAGCGGAGCCAAGCGGAACATCTTAATCTTTGGCCAAAGGACCAAAAAGTCCCGGTACCATGGCAGGATTGGTCGTCCCCCCAAGTATAGAAAAAGCCAGCACAGAGGTTACCAGACGATAGCCACAGAGGGTATGTGCCCGTCTCTGTTCATGTCTGCCCTGTCGGCCCACCCGGACCGAACCCTGTCTCTGTGCTGGGAGCAACACTGCAAACTGCTGCCAGGCGTCCAGGGCATCCATGCTACACAGGTGGCAGCATGGACCGTGGAGGAGGTCTTTGGATTTGTCCAGAAACTGACTGGTTGTGAAGAACAGGCCTGTGTCTTCAAAGAGGAAATGATTGACGGGGAGGCCTTCCTATTACTGACACAAACTGACATCGTCAAAATCCTGAACATCAAACTTGGTCCCGCCCTCAAGATCTCCAACGCCATTTTAATGTTCAAGAGTATTGACGAAGGCCTCAAGTGATCCTGTCCCCACTCGGCCAGAGACTCCGTGACGAATCATCATGTGCCAAAATCATCCAGAACCCTACCCCTGTTATGTGTTTGGTGTTCAGTAcccatcagagagagaacaggagagggggCTGAGAGTGGAAAAGAGATGGGGACAGaactgagaaagagaaagaaaaaaactgGGAAAAAGTGTAAGCAAATGTTTTTATAAGGTTGCTTCACTGCTCGTGCAATAAAATGAGTAAAATCTTAACTGAAAGTGTAAGCTTTTGTAATTTATGCAAAATATATGGAATTATTTATGTGGGATGATGTTTTACTGCAATTTTTTTGTCACAGATTTGAAATCCGGCGTGATTTTATGCTGCTGTTTCTTTACTTGGTCACTAGATACAGCATATGGACAGTTTCTAAGACCAGAAAAGGTTTAAAGTTTCTCAAGTATTGATCTTACGTGAGATAAATTCAAAATCATGTTTCAAAATATGAACTTTGTTTCGAACATTTGAAAAGGTTTACATTTTCACTCAGAAATATCAAGATATCTGGGGGATTTATTGTTTTGAATCATTTTTATATTTTATGTAGGTTTATGCACTGTATTTAAATATAATCTTAAAAGGGCTCCAGGATTCCTATAGCTATATTTCTCTCTGGTGGGCAAAACTGTATCACCATATTCTTGGATCAAAATCGTTCATTCCATATGTACAAATAAATGTCCAATTCAA
>XM_021566568.2
GGTTATTTAACTCATGGTCCGCTGTAGGGTGAGTTGCGCATGCGTGATTTTTAAGATTCTGACCCGCAAGAAGAAACCGCTGAGGCAGTAAGTGAAGTCTGCCATGAGTGCCAAAGTGGAGCTGGATGTTTCAGCCAAAGAAGCAGATCCCAATCCTTCCAGTGATGCCCTCTCCTCCAATGACAGCCTGTCGAAGAAGACACACCCACAGACCACAGCACTCATCCTGCCAGCTCCTGTTCCCAGTACACAGAAGGTGGAGGTCTCTCCGGGTGCTGCTGAGGCAGGTAATGGAGCCACTGCTGGAGAGGTGGAAACCCCCACTATAGCCCCCCAGGTTGGGGGAGCCTGTAGCATCGTCCATGTACTGGAGTGGAAAGAAGGGATGGCCATCTTACCCAGCAGCAACCTTAAGTTCTGTCTGAGTGACTGTGGAACACTGGAGATGATCAGCCAAGAAAAAATCAGCAGTGCTGAACCAGCAGTAATGGTGTCTGGGAAAATACCTGACTCCAAAAACAGGCCAACTAACAAAACAGATATGGTGTCTCCTCTCAGCTCTGTGGGTGGTGTGGCTGTGGAACAAGAGAGGCCCATCAAGATTGAGCCTAAGACCCAGGGAGggccaggacaacaggagagctGTGATCCTATGGCACAGAGAACCTACCCAGAGCAGCTACGCAGGGAGCCTATGACTGACAAGAGGGGGGGAGGCACAGATAAGATTCCCGGGGGCAGGGTAGCATCTCTGGACCCTGAGCTGCTGAAACCcatgaagaagaggaagaggaaggactaCCTGAGTCCGTCAGAGGAAGAATCTGAGCTGGATGGAATGGATTACTTGAAGACAGAAAACAGACACAACAAAGCAGGTGCTGTTGAAGTCCATATGGATCTGTGGACATGGGGACAGTATCTGGAGGAGACCAAAGCAGTGGCAGCTCCGGCCAAACTCTTTCAAGAGTCTCAGAGAGTACCTCAGTGCAAAAGCAGCTTCCGCCAGGGCATGAAGTTAGAGGGCATCGACCCCCAGCACCCCTCCATGTACTTTGTTCTGACTGTGGCTGAGGTTTGTGGCTACAGGCTGCGTCTCCATTTTGACGGCTACTCAGACTGTCATGACTTCTGGGTAAATGCCAACTGCCCCGACATCCACCCGGCGGGATGGTGTGAGAGCACTGGACACAAACTCTACACCCCCAAAGGCTGCAAAGAGGAGGAGTTCTCCTGGGCCAGCTACCTGAAAATGAGTAAAGCACAAGTTGCCCCTAAAGAGGTGTTTGCCAGCCCTGGAAGAACGGATACGGAGTGTGGTTTTGAGGTGGGCATGAAGCTGGAGGCGGTTGACCGCATGAACCCCTCTCTCATTTGCGTGGCGACCGTGACCGACGTGGTGGACGACCGCTTCCTGGTTCACTTTGATAACTGGGACGACACGTATGACTACTGGTGTGATGCCAGCAGTCCATACATCCATCCTATTGGCTGGTGCCAAGAGAGGAGCCTCCCCCTAACGCCGCCTCAAGATTACCCAGACCCAGGCAGGTTCTCCTGGCCAAGGTACCTCGACGAGACTGGCTCTACCGCCGTGTCTGCTGAGGCTTTTAAAGTGCGTCCTGCCCATTGCTTCCAGGCTCAGATGAAGCTGGAGGTGGTGGACAAAAGGAGCCCCGGCCTGATACGGGTGGCCACAGTGGAGGAGGTCGACACCCACCGCATTAAGATCCATTTTGATGGCTGGAGTCATATGTATGATGAGTGGATGGACTCGGACCACCCTGACACCCACCCGGTCGGCTGGTGTGAGAGTACGGGTCACCCGCTAAAAATCCCTCCCCCTGAGTCCAACAAAACCCAACAGCTTGACCCCAGGGAACCTGCAACCACAGGCCAGTCCAGTTTCTCCTCCATGCCTTGCAAAGTAATCAACCACTCCAGATCCACAAAGTACAGCTTCCATCACAGGAAGTGTCCAACGCCTGGATGTGATGGCTCGGGTCATGTGACTGGGCGGTTCACAGCGCATCACTGTCTGTCAGGCTGCCCATTGGCTGAGCGAAACCAGGGCAGACTCAAAACCGACCTATCAGATACAGAGGGGAGCGGAGCCAAGCGGAACATCTTAATCTTTGGCCAAAGGACCAAAAAGTCCCGGTACCATGGCAGGATTGGTCGTCCCCCCAAGTATAGAAAAAGCCAGCACAGAGGTTACCAGACGATAGCCACAGAGGGTATGTGCCCGTCTCTGTTCATGTCTGCCCTGTCGGCCCACCCGGACCGAACCCTGTCTCTGTGCTGGGAGCAACACTGCAAACTGCTGCCAGGCGTCCAGGGCATCCATGCTACACAGGTGGCAGCATGGACCGTGGAGGAGGTCTTTGGATTTGTCCAGAAACTGACTGGTTGTGAAGAACAGGCCTGTGTCTTCAAAGAGGAAATGATTGACGGGGAGGCCTTCCTATTACTGACACAAACTGACATCGTCAAAATCCTGAACATCAAACTTGGTCCCGCCCTCAAGATCTCCAACGCCATTTTAATGTTCAAGAGTATTGACGAAGGCCTCAAGTGATCCTGTCCCCACTCGGCCAGAGACTCCGTGACGAATCATCATGTGCCAAAATCATCCAGAACCCTACCCCTGTTATGTGTTTGGTGTTCAGTAcccatcagagagagaacaggagagggggCTGAGAGTGGAAAAGAGATGGGGACAGaactgagaaagagaaagaaaaaaactgGGAAAAAGTGTAAGCAAATGTTTTTATAAGGTTGCTTCACTGCTCGTGCAATAAAATGAGTAAAATCTTAACTGAAAGTGTAAGCTTTTGTAATTTATGCAAAATATATGGAATTATTTATGTGGGATGATGTTTTACTGCAATTTTTTTGTCACAGATTTGAAATCCGGCGTGATTTTATGCTGCTGTTTCTTTACTTGGTCACTAGATACAGCATATGGACAGTTTCTAAGACCAGAAAAGGTTTAAAGTTTCTCAAGTATTGATCTTACGTGAGATAAATTCAAAATCATGTTTCAAAATATGAACTTTGTTTCGAACATTTGAAAAGGTTTACATTTTCACTCAGAAATATCAAGATATCTGGGGGATTTATTGTTTTGAATCATTTTTATATTTTATGTAGGTTTATGCACTGTATTTAAATATAATCTTAAAAGGGCTCCAGGATTCCTATAGCTATATTTCTCTCTGGTGGGCAAAACTGTATCACCATATTCTTGGATCAAAATCGTTCATTCCATATGTACAAATAAATGTCCAATTCAA

Function

NR:

description
lethal(3)malignant brain tumor-like protein 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24387 L3MBTL; lethal(3)malignant brain tumor-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566570.2 False 2868 mRNA 0.49 19 55609187 55624311
XM_021566567.2 False 3340 mRNA 0.50 22 55609187 55626667
XM_021566568.2 True 3302 mRNA 0.50 22 55609187 55626735

Neighbor

gene id symbol gene type direction distance location
LOC110492337 sgk2 coding downstream 1863 55595569 ~ 55607324 (-)
LOC110492334 dkga coding downstream 26965 55568377 ~ 55582222 (-)
LOC110491111 LOC106566685 coding downstream 92078 55397637 ~ 55517109 (-)
LOC110492331 LOC106566684 coding downstream 226166 55375735 ~ 55383021 (-)
actr8 actr8 coding downstream 236892 55350144 ~ 55372295 (-)
LOC110492341 LOC106571981 coding upstream 180 55626915 ~ 55632905 (-)
LOC110492339 rae1 coding upstream 7079 55633814 ~ 55638471 (-)
LOC110492342 LOC106566692 coding upstream 19410 55646145 ~ 55649415 (-)
LOC100170209 LOC100170209 coding upstream 44729 55671464 ~ 55692812 (-)
LOC110492344 NA coding upstream 115533 55742140 ~ 55745483 (-)
G1390777 NA non-coding downstream 28286 55580207 ~ 55580901 (-)
G1390772 NA non-coding downstream 33884 55574956 ~ 55575303 (-)
G1390771 NA non-coding downstream 34379 55574529 ~ 55574808 (-)
G1390745 NA non-coding downstream 41390 55566446 ~ 55567797 (-)
G1390744 NA non-coding downstream 42939 55564530 ~ 55566248 (-)
G1390817 NA non-coding upstream 39772 55666507 ~ 55666872 (-)
G1390818 NA non-coding upstream 40393 55667128 ~ 55667643 (-)
G1390841 LOC106613263 non-coding upstream 88507 55715242 ~ 55715658 (-)
G1390845 NA non-coding upstream 92797 55719532 ~ 55719754 (-)
G1390850 NA non-coding upstream 100780 55727515 ~ 55727835 (-)
G1390030 ifrd2 other downstream 622924 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1063944 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1876272 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2576266 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 3036880 52566433 ~ 52577143 (-)
LOC110492352 nua4l other upstream 197424 55824155 ~ 55826646 (-)
G1391586 NA other upstream 437768 56064503 ~ 56064862 (-)
G1391624 NA other upstream 598679 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 654317 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 797537 56424272 ~ 56437279 (-)

Expression


Co-expression Network