LOC110492341 (LOC106571981)


Basic Information

Item Value
gene id LOC110492341
gene name LOC106571981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55626915 ~ 55632905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566575.2
CGTGTATTCTCGCGATGGTCTTTTACGTCACAGTCTACATAAAACATTCGAACTCCTCGGCTACTTCTCTTTTGATTACGATATTTTGTGCGAGGATCATTAATCATGCCTCGCATCTATGTTGGAAAACTTAATTATAATGCTCGAGAAAAAGACCTTCAAAGATTTTTCAATGGCTACGGAAAGCTTATGGAAATTGATCTGAAAAATGGATATGGCTTTGTAGAATTTGAGGATAATCGCGATGCGGACGACGCAGTGTATGAACTGAATGGCAAGGAGTTGTGCGGGGAGCGTGTGACCGTGGAACATGCCAGAGGACCGCGCCGTGACCGAGATGGATATGGTGGTGGCGGGGGTGGTGGTCGCAGTAGTAGTGGTTACAGCAGCAGCAGAAGCCGCACTGGCAGGGATAAGTACGGGCCACCCGTCCGTACTGAGTACCGACTGATCGTTGAGAATCTGTCCAGCCGCTGCAGCTGGCAGGATCTGAAGGATTTCATGCGTCAGGCTGGAGAGGTCACGTATGCCGACGCCCACAAGGAGCGTACCAACGAGGGTGTCATCGAGTTTGGCTCACGCTCGGACATGAGGAGGGCCCTAGACAAGCTGGACGGCACGGACATCAACGGGAGGAAGATCCGCCTGGTGGAGGAAAAGTCTCGCCGCCGACGCTCCTACTCTGGCAGTCGCTCTAGGTCTCGCAGCAGACGTCGCTCTCGTAGCAGGAGCCGCAGGAGCAGTCGCTCCAGGAGTAACTCCAGATCCCACTCCCGATCCCATTCTCGAAGCAAGAGACGCCACTCCAAGTCTGGAAGGAAGTCTCGTTCCCGCTCTCGCACCCGCAAATCCAGATCCCGTTCCAACAAAAGCAAGTCTCGTTCCAAGAGCTGCTCCAAGGTGAAATCCGAGCGGGATTCCCGCAGCCGCTCCAAGGAGAAGTCGGCCAACAAGAAGTCCCGTAGCCGATCAGCATCTCCCGTGAAAAATGGGAAGGAGGAGCGTTCCTCTCGCTCCCCTTCCCCAGCAGCTGACCGTCGCTCCAAGTCTCCAGACAAGCGCTCAGTCTCCCACTCCAAATCCAGGTCTAGATCAGCTTCCCGAGATTAAAGGCTTCATCCAGGTGTTCCCCATTTGAGCAACTGGTGATATAGGACCAGCTCCTATTTGATTTGACAGATCAATCGCAGCACCAGGTGCATCAAGGCATGCTCAGTCTTAATCAGTGCTATCCTTGACACTTAAAAATCCGAACTACTATCTTGACGTATTATACATGGCATGAGAATGATTTAGTCATGTTTATTGTGGGGGAGTGCGCATCGTAGATTACAGCTATTGATCAGTTTTGTATTAATTGTACATAGAGGAGCTTGTCTGAAGGGCTTTGTATTTAAACCAAGCCAGGCCTTTTCTTTAATATCCTTTTTAGTTCCTGTTCGTATTCCTCTGTCTGCTTTTGCTTACCTCAGGGTGGTGTTTTGAGTTGATTTTTCATTTTCATGATAGGAGTCATTTCACCTATTGAGCCCCCCCCTCAAGATGTACTCTGTATGTGTGCATACAATTTGTAGATGAGCAGATTTTTGGCCTTGTATGAACAGGTTTACCAGGGATGGTGGTACAGATTACACCCTCTCCACATAAGAAGCCGTTCTGATTACATGTGACAtgcccattttttttttattgtacatTTAATAAAAAGTTCATATGAAAA

Function

NR:

description
serine/arginine-rich splicing factor 6-like

GO: NA

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566575.2 True 1720 mRNA 0.49 6 55626915 55632905

Neighbor

gene id symbol gene type direction distance location
LOC110492338 LOC106566690 coding downstream 180 55609187 ~ 55626735 (-)
LOC110492337 sgk2 coding downstream 19591 55595569 ~ 55607324 (-)
LOC110492334 dkga coding downstream 44693 55568377 ~ 55582222 (-)
LOC110491111 LOC106566685 coding downstream 109806 55397637 ~ 55517109 (-)
LOC110492331 LOC106566684 coding downstream 243894 55375735 ~ 55383021 (-)
LOC110492339 rae1 coding upstream 909 55633814 ~ 55638471 (-)
LOC110492342 LOC106566692 coding upstream 13240 55646145 ~ 55649415 (-)
LOC100170209 LOC100170209 coding upstream 38559 55671464 ~ 55692812 (-)
LOC110492344 NA coding upstream 109363 55742140 ~ 55745483 (-)
LOC110492346 bpi coding upstream 122225 55755130 ~ 55769029 (-)
G1390797 NA non-coding downstream 12948 55602174 ~ 55613967 (-)
G1390777 NA non-coding downstream 46014 55580207 ~ 55580901 (-)
G1390772 NA non-coding downstream 51612 55574956 ~ 55575303 (-)
G1390771 NA non-coding downstream 52107 55574529 ~ 55574808 (-)
G1390745 NA non-coding downstream 59118 55566446 ~ 55567797 (-)
G1390817 NA non-coding upstream 33602 55666507 ~ 55666872 (-)
G1390818 NA non-coding upstream 34223 55667128 ~ 55667643 (-)
G1390841 LOC106613263 non-coding upstream 82337 55715242 ~ 55715658 (-)
G1390845 NA non-coding upstream 86627 55719532 ~ 55719754 (-)
G1390850 NA non-coding upstream 94610 55727515 ~ 55727835 (-)
G1390030 ifrd2 other downstream 640652 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1081672 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1894000 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2593994 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 3054608 52566433 ~ 52577143 (-)
LOC110492352 nua4l other upstream 191254 55824155 ~ 55826646 (-)
G1391586 NA other upstream 431598 56064503 ~ 56064862 (-)
G1391624 NA other upstream 592509 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 648147 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 791367 56424272 ~ 56437279 (-)

Expression


Co-expression Network