LOC110492339 (rae1)


Basic Information

Item Value
gene id LOC110492339
gene name rae1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55633814 ~ 55638471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566572.2
ATCTGTGCAGCGCGTCTGCAATGAATACTACCTGGAACCCGCCCTACATTGCCGACGCATGTGCAATGAAAGCACTTCCTTTTCCGCTCATTGCGCTGCGTTTTCTTCTTCAACCAAGCTTCTCCTCAACGTAAAAAAAAGATCACTAACCGCGTGTTGGCTCAAGTGAATCCGACGTCATGAGTTTGTTCGGGGCCAGCACTGGCTTTGGCGCTGGGGGATTTGGAGCGGCAACCACGGACACCCACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTCAGTCCTCCTGCCATGCCAGGGAACTTCTTGATAGGGGGATCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAACGGGCAGACAGTCCCCAAAGCCCAGCAGATGCACACGGGTCCCGTCCTTGATGTCTGCTGGAGCGAAGACGGTAGCAAGGTTTTCACTGCGTCTTGTGACAAGACTGCCAAAATGTGGGACCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAgttctgggacACCCGCTCGCCCAACCCAATGATGTCTCTGCAGTTGCCAGAGAGGTGCTACTGTGCAGATGTGGTGTACCCCATGGCAGTGGTAGCGTCTGCAGACCGAGGTTTGATTGTATATCAGCTTGAAAACCAGCCGTCTGAGTTTAGGAGGATAGACTCACCACTCAAACACCAGGTGACTGGTCTCACATACCAGCACCGCTGCATAGCCATTTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTCGGAAGCATTGAAGGGCGGGTTGCAATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTTAAGTGCCACAGGTCGAATGGAACCAACACAGCCACACCACAAGACATCTATGCTGTAAATGCCATCTCCTTCCACCCTGTCCACGGGACACTGGCGACTGTTGGGTCAGATGGTCGCTTCAGCTTCTGGGATAAAGACGCCCGCACCAAGCTGAAGACCTCAGAGCAGCTGGATCAGCCAATCACAGCATGCTCCTTCAACAACAATGGCAACATCTTTGCTTACGCCTCCAGCTATGATTGGTCAAAGGGACATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCACGGAACAAGAAATGATTTGTCCAGTATCTCGCCTGTTGTTTGCAAAATGGAGGGTTGTCAAATGCACACGTCATGCCTGCACGACCCTGTTCCTTTCCTGTGCCAACACCAAAGGTGGAGCTGGTGCTTGCAAAATAGGGGTTGCAGAGTGATAAGATATTGTTTTGAAATATCTATTTTATTTTGTCACGATACCATGGTTGCATTTaaagtaatgtttttttttctgttaCGTTGTTGTACAATTTAACGATATTGGAGAATGACATAAATGAGTAGATAAAGACAAGTTACACTATC
>XM_036947332.1
ATCTGTGCAGCGCGTCTGCAATGAATACTACCTGGAACCCGCCCTACATTGCCGACGCATGTGCAATGAAAGCACTTCCTTTTCCGCTCATTGCGCTGCGTTTTCTTCTTCAACCAAGCTTCTCCTCAACGTAAAAAAAAGATCACTAACCGCGTGTTGGCTCAAGTGAATCCGACGTCATGAGTTTGTTCGGGGCCAGCACTGGCTTTGGCGCTGGGGGATTTGGAGCGGCAACCACGGACACCCACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTCAGTCCTCCTGCCATGCCAGGGAACTTCTTGATAGGGGGATCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAACGGGCAGACAGTCCCCAAAGCCCAGCAGATGCACACGGGTCCCGTCCTTGATGTCTGCTGGAGCGAAGACGGTAGCAAGGTTTTCACTGCGTCTTGTGACAAGACTGCCAAAATGTGGGACCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAgttctgggacACCCGCTCGCCCAACCCAATGATGTCTCTGCAGTTGCCAGAGAGGTGCTACTGTGCAGATGTGGTGTACCCCATGGCAGTGGTAGCGTCTGCAGACCGAGGTTTGATTGTATATCAGCTTGAAAACCAGCCGTCTGAGTTTAGGAGGATAGACTCACCACTCAAACACCAGCACCGCTGCATAGCCATTTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTCGGAAGCATTGAAGGGCGGGTTGCAATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTTAAGTGCCACAGGTCGAATGGAACCAACACAGCCACACCACAAGACATCTATGCTGTAAATGCCATCTCCTTCCACCCTGTCCACGGGACACTGGCGACTGTTGGGTCAGATGGTCGCTTCAGCTTCTGGGATAAAGACGCCCGCACCAAGCTGAAGACCTCAGAGCAGCTGGATCAGCCAATCACAGCATGCTCCTTCAACAACAATGGCAACATCTTTGCTTACGCCTCCAGCTATGATTGGTCAAAGGGACATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCACGGAACAAGAAATGATTTGTCCAGTATCTCGCCTGTTGTTTGCAAAATGGAGGGTTGTCAAATGCACACGTCATGCCTGCACGACCCTGTTCCTTTCCTGTGCCAACACCAAAGGTGGAGCTGGTGCTTGCAAAATAGGGGTTGCAGAGTGATAAGATATTGTTTTGAAATATCTATTTTATTTTGTCACGATACCATGGTTGCATTTaaagtaatgtttttttttctgttaCGTTGTTGTACAATTTAACGATATTGGAGAATGACATAAATGAGTAGATAAAGACAAGTTACACTATC
>XM_036947331.1
ATCTGTGCAGCGCGTCTGCAATGAATACTACCTGGAACCCGCCCTACATTGCCGACGCATGTGCAATGAAAGCACTTCCTTTTCCGCTCATTGCGCTGCGTTTTCTTCTTCAACCAAGCTTCTCCTCAACGTAAAAAAAAGATCACTAACCGCGTGTTGGCTCAAGTGAATCCGACGTCATGAGTTTGTTCGGGGCCAGCACTGGCTTTGGCGCTGGGGGATTTGGAGCGGCAACCACGGACACCCACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTCAGTCCTCCTGCCATGCCAGGGAACTTCTTGATAGGGGGATCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAACGGGCAGACAGTCCCCAAAGCCCAGCAGATGCACACGGGTCCCGTCCTTGATGTCTGCTGGAGCGAAGACGGTAGCAAGGTTTTCACTGCGTCTTGTGACAAGACTGCCAAAATGTGGGACCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAgttctgggacACCCGCTCGCCCAACCCAATGATGTCTCTGCAGTTGCCAGAGAGGTGCTACTGTGCAGATGTGGTGTACCCCATGGCAGTGGTAGCGTCTGCAGACCGAGGTTTGATTGTATATCAGCTTGAAAACCAGCCGTCTGAGTTTAGGAGGATAGACTCACCACTCAAACACCAGCACCGCTGCATAGCCATTTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTCGGAAGCATTGAAGGGCGGGTTGCAATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTTAAGTGCCACAGGTCGAATGGAACCAACACAGCCACACCACAAGACATCTATGCTGTAAATGCCATCTCCTTCCACCCTGTCCACGGGACACTGGCGACTGTTGGGTCAGATGGTCGCTTCAGCTTCTGGGATAAAGACGCCCGCACCAAGCTGAAGACCTCAGAGCAGCTGGATCAGCCAATCACAGCATGCTCCTTCAACAACAATGGCAACATCTTTGCTTACGCCTCCAGCTATGATTGGTCAAAGGGACATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCACGGAACAAGAAATGGTGA

Function

symbol description
rae1 Predicted to enable RNA binding activity and ubiquitin binding activity. Predicted to be involved in RNA export from nucleus; regulation of mitotic spindle organization; and transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to act upstream of or within cell division and mRNA export from nucleus. Predicted to be located in mitotic spindle pole. Predicted to be part of nuclear pore. Orthologous to human RAE1 (ribonucleic acid export 1).

NR:

description
mRNA export factor isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14298 RAE1, GLE2; mRNA export factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566572.2 False 1583 mRNA 0.49 13 55633814 55638471
XM_036947332.1 False 1562 mRNA 0.49 13 55633814 55638471
XM_036947331.1 True 1280 mRNA 0.52 12 55634274 55638471

Neighbor

gene id symbol gene type direction distance location
LOC110492341 LOC106571981 coding downstream 909 55626915 ~ 55632905 (-)
LOC110492338 LOC106566690 coding downstream 7079 55609187 ~ 55626735 (-)
LOC110492337 sgk2 coding downstream 26490 55595569 ~ 55607324 (-)
LOC110492334 dkga coding downstream 51592 55568377 ~ 55582222 (-)
LOC110491111 LOC106566685 coding downstream 116705 55397637 ~ 55517109 (-)
LOC110492342 LOC106566692 coding upstream 7674 55646145 ~ 55649415 (-)
LOC100170209 LOC100170209 coding upstream 32993 55671464 ~ 55692812 (-)
LOC110492344 NA coding upstream 103797 55742140 ~ 55745483 (-)
LOC110492346 bpi coding upstream 116659 55755130 ~ 55769029 (-)
LOC110492348 viaat coding upstream 145337 55783808 ~ 55787739 (-)
G1390797 NA non-coding downstream 19847 55602174 ~ 55613967 (-)
G1390777 NA non-coding downstream 52913 55580207 ~ 55580901 (-)
G1390772 NA non-coding downstream 58511 55574956 ~ 55575303 (-)
G1390771 NA non-coding downstream 59006 55574529 ~ 55574808 (-)
G1390745 NA non-coding downstream 66017 55566446 ~ 55567797 (-)
G1390817 NA non-coding upstream 28036 55666507 ~ 55666872 (-)
G1390818 NA non-coding upstream 28657 55667128 ~ 55667643 (-)
G1390841 LOC106613263 non-coding upstream 76771 55715242 ~ 55715658 (-)
G1390845 NA non-coding upstream 81061 55719532 ~ 55719754 (-)
G1390850 NA non-coding upstream 89044 55727515 ~ 55727835 (-)
G1390030 ifrd2 other downstream 647551 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1088571 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1900899 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2600893 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 3061507 52566433 ~ 52577143 (-)
LOC110492352 nua4l other upstream 185688 55824155 ~ 55826646 (-)
G1391586 NA other upstream 426032 56064503 ~ 56064862 (-)
G1391624 NA other upstream 586943 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 642581 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 785801 56424272 ~ 56437279 (-)

Expression


Co-expression Network