LOC110492342 (LOC106566692)


Basic Information

Item Value
gene id LOC110492342
gene name LOC106566692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55646145 ~ 55649415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566577.2
AATAATATTACGTCATACGGCCTAAACCAGGAAGTAAGAAATATCAACAATCAGGCCAGAGCGAGAAGAGTGACGCGATCGCCTGTTGGCGTTTAACGTTTTAAAAGGACCTTTATTGCTATATAGTTTAGAATCGCAGAATGTCCGTGTTTGGAAAGCTGTTCGGCGGTGGGGGCAAAGGAGGTAAAGGGCCAAGTGCACAAGAGGCGATTCAGAAGCTCAGAGAGACCGAGGAAATGTTAACGAAGAAACAGGAATTTCTAGAGAAAAAGATTGACCAGGAACTCATTACTGCGAAGAAAAACGGAACTAAAAACAAACGGGCGGCCCTGCAGGCCTTGAAAAGGAAGAAGCGGTATGAGAAGCAGCTTACCCAGATTGATGGCACATTGTCCACCATCGAGTTCCAGAGAGAGGCGCTGGAAAATGCCAACACCAACACTGAAGTGCTCAAGAACATGGGCTTTGCTGCCAAGGCAATGAAGGCTGCCCATGAAAACATGGACATAGACAAAGTAGATGACTTGATGCAAGACATCACTGAGCAGCAGGAGCTAGCGCAAGAGATCTCAGATGCCATCTCGAAACCTGTAGGCTTTGGAGATGAGTTTGATGAGGATGAACTCCTAGCAGAGTTGGATGAGCTGGAACAAGAGGAATTGGACAAAAACTTGCTGGAGATTGGCGGGACAGAAAATGTCCCTCTACCCAATGTGCCTTCTACTTCATTACCCTCAAGACCTGtatttTCAGCCAAgaaggaggatgaagatgagcATGCCATGGAGGACTTACAGCGCTGGGCGATGGAGGCTAACTAGTTGCATTACTGACACCACCTGTTGTAGAGGGGAAGAAAGGACTAATTGAATATGGTTGTTTTGTGTCCGAGAGCCAACCATCTTCTAAAACTAACACTAGAAAGGCCAATGCTGTAGGTTCTGTTTCCAGCCCAAAACCAGAGAAAGGTTACCATGGCCTTTCATTAAAAGAGGAAGTTCAGAAGCTGTATAAAAGCTATAAACAGGATGTTTGAATCAGAAAATGTCTTTGGAAATTTCTACCAAAAACTTTGAGCATAATTGTTTGGCAGTGATTGTACTATCACTGAACTGTTCTATTGTCTTTGATGCTATGAACTTCACTGAAAGgcaaacatttgtttttaatacatGGGCGTTGCAATGTCTCTCTTTCCGACTTAAACATATTTACCATTTGGTGTGGTGGGTGTGGGCTGGATATATTTATTCACCTTTACTTTTTGTTTGTAGTTTCTCCCAAAATAAGATGGAAATATGAGCATGCTCTCATGGTAATGTTTAGAAGGGTctattttctggattgtttttctgaattttgttttacatattttttCCCCTATCAACATTTTGGTGATTCCCATCTACTAAGCATCTTCACCATGTGGCCCTTGCTATTTGATGTAAATATCTAAATAATTTATATTTTTGCTGTCACAGAAGGTTTTCTTTGTGTTGTGCTAAGCATGCAATGAGGGAAAACTTAATACACTGCACAGCTTCAGAGAAATTATGAACCCCAACCAGTTATGTTCTCTGTGTCATTTCTGAAAGGGTTCATTTTGAATTATATAAGGTTGGGGAAAAATCACCATCTTAACtgcagggggaaaaaaatagaCTTCATCGTTTAATGATTAGACTAGTAGATACAGTATCAACATTTGGGGTTTGAggattacttttattttttacacaatgtactttttttttttttacataggaaAATAATTATCACAAGGATAAGCATGTTTGCATTTCAATGGTTTAATTGTCCAGATGAGAATATTATTTGGAAAATAATTAAAGTTGTTTATTTTGTGGTGCAGGTTGTTTTTCTTGGTTAGGCatcagtgtacaaaacaataagATCACCTGTGAATTCAAAACTCAATAAAGTAGGAAAtctt
>XM_021566578.2
ACAATAATATTACGTCATACGGCCTAAACCAGGAAGTAAGAAATATCAACAATCAGGCCAGAGCGAGAAGAGTGACGCGATCGCCTGTTGGCGTTTAACGTTTTAAAAGGACCTTTATTGCTATATAGTTTAGAATCGCAGAATGTCCGTGTTTGGAAAGCTGTTCGGCGGTGGGGGCAAAGGAGGTAAAGGGCCAAGTGCACAAGAGGCGATTCAGAAGCTCAGAGAGACCGAGGAAATGTTAACGAAGAAACAGGAATTTCTAGAGAAAAAGATTGACCAGGAACTCATTACTGCGAAGAAAAACGGAACTAAAAACAAACGGGCGGCCCTGCAGGCCTTGAAAAGGAAGAAGCGGTATGAGAAGCAGCTTACCCAGATTGATGGCACATTGTCCACCATCGAGTTCCAGAGAGAGGCGCTGGAAAATGCCAACACCAACACTGAAGTGCTCAAGAACATGGGCTTTGCTGCCAAGGCAATGAAGGCTGCCCATGAAAACATGGACATAGACAAAGTAGATGACTTGATGCAAGACATCACTGAGCAGCAGGAGCTAGCGCAAGAGATCTCAGATGCCATCTCGAAACCTGTAGGCTTTGGAGATGAGTTTGATGAGGATGAACTCCTAGCAGAGTTGGATGAGCTGGAACAAGAGGAATTGGACAAAAACTTGCTGGAGATTGGCGGGACAGAAAATGTCCCTCTACCCAATGTGCCTTCTACTTCATTACCCTCAAGACCTGCCAAgaaggaggatgaagatgagcATGCCATGGAGGACTTACAGCGCTGGGCGATGGAGGCTAACTAGTTGCATTACTGACACCACCTGTTGTAGAGGGGAAGAAAGGACTAATTGAATATGGTTGTTTTGTGTCCGAGAGCCAACCATCTTCTAAAACTAACACTAGAAAGGCCAATGCTGTAGGTTCTGTTTCCAGCCCAAAACCAGAGAAAGGTTACCATGGCCTTTCATTAAAAGAGGAAGTTCAGAAGCTGTATAAAAGCTATAAACAGGATGTTTGAATCAGAAAATGTCTTTGGAAATTTCTACCAAAAACTTTGAGCATAATTGTTTGGCAGTGATTGTACTATCACTGAACTGTTCTATTGTCTTTGATGCTATGAACTTCACTGAAAGgcaaacatttgtttttaatacatGGGCGTTGCAATGTCTCTCTTTCCGACTTAAACATATTTACCATTTGGTGTGGTGGGTGTGGGCTGGATATATTTATTCACCTTTACTTTTTGTTTGTAGTTTCTCCCAAAATAAGATGGAAATATGAGCATGCTCTCATGGTAATGTTTAGAAGGGTctattttctggattgtttttctgaattttgttttacatattttttCCCCTATCAACATTTTGGTGATTCCCATCTACTAAGCATCTTCACCATGTGGCCCTTGCTATTTGATGTAAATATCTAAATAATTTATATTTTTGCTGTCACAGAAGGTTTTCTTTGTGTTGTGCTAAGCATGCAATGAGGGAAAACTTAATACACTGCACAGCTTCAGAGAAATTATGAACCCCAACCAGTTATGTTCTCTGTGTCATTTCTGAAAGGGTTCATTTTGAATTATATAAGGTTGGGGAAAAATCACCATCTTAACtgcagggggaaaaaaatagaCTTCATCGTTTAATGATTAGACTAGTAGATACAGTATCAACATTTGGGGTTTGAggattacttttattttttacacaatgtactttttttttttttacataggaaAATAATTATCACAAGGATAAGCATGTTTGCATTTCAATGGTTTAATTGTCCAGATGAGAATATTATTTGGAAAATAATTAAAGTTGTTTATTTTGTGGTGCAGGTTGTTTTTCTTGGTTAGGCatcagtgtacaaaacaataagATCACCTGTGAATTCAAAACTCAATAAAGTAGGAAAtctt

Function

NR:

description
charged multivesicular body protein 4b-like isoform X2

GO: NA

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566577.2 False 1951 mRNA 0.40 5 55646145 55649413
XM_021566578.2 True 1944 mRNA 0.40 5 55646145 55649415

Neighbor

gene id symbol gene type direction distance location
LOC110492339 rae1 coding downstream 7674 55633814 ~ 55638471 (-)
LOC110492341 LOC106571981 coding downstream 13240 55626915 ~ 55632905 (-)
LOC110492338 LOC106566690 coding downstream 19410 55609187 ~ 55626735 (-)
LOC110492337 sgk2 coding downstream 38821 55595569 ~ 55607324 (-)
LOC110492334 dkga coding downstream 63923 55568377 ~ 55582222 (-)
LOC100170209 LOC100170209 coding upstream 22049 55671464 ~ 55692812 (-)
LOC110492344 NA coding upstream 92853 55742140 ~ 55745483 (-)
LOC110492346 bpi coding upstream 105715 55755130 ~ 55769029 (-)
LOC110492348 viaat coding upstream 134393 55783808 ~ 55787739 (-)
LOC110492352 nua4l coding upstream 174740 55824155 ~ 55826646 (-)
G1390797 NA non-coding downstream 32178 55602174 ~ 55613967 (-)
G1390777 NA non-coding downstream 65244 55580207 ~ 55580901 (-)
G1390772 NA non-coding downstream 70842 55574956 ~ 55575303 (-)
G1390771 NA non-coding downstream 71337 55574529 ~ 55574808 (-)
G1390745 NA non-coding downstream 78348 55566446 ~ 55567797 (-)
G1390817 NA non-coding upstream 17092 55666507 ~ 55666872 (-)
G1390818 NA non-coding upstream 17713 55667128 ~ 55667643 (-)
G1390841 LOC106613263 non-coding upstream 65827 55715242 ~ 55715658 (-)
G1390845 NA non-coding upstream 70117 55719532 ~ 55719754 (-)
G1390850 NA non-coding upstream 78100 55727515 ~ 55727835 (-)
G1390030 ifrd2 other downstream 659882 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1100902 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1913230 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2613224 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 3073838 52566433 ~ 52577143 (-)
G1391586 NA other upstream 415088 56064503 ~ 56064862 (-)
G1391624 NA other upstream 575999 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 631637 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 774857 56424272 ~ 56437279 (-)

Expression


Co-expression Network