LOC110492346 (bpi)


Basic Information

Item Value
gene id LOC110492346
gene name bpi
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55755130 ~ 55769029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566584.2
GTTTCACTTTACAATGAAACAGGAAGTTAATAGACTATATATAAATATCACATGATTTGAGCACAGTCCCAAATCAGACCTACAGCCATCTATCTACACTAGAGCTAATAATCAACCTAGggtgttaagcatgttatCCCTCCTAATACTTCTGCTGAATCTTACCAATCATGCTTTTGGACAAAATCCTGCAATAAAGGCCATATTGTCAAATAAAGGACTTCAATATGGGTCACACATTGGGGCTGATTGGATGCAGGAGAAGATAGGTAGTGTGATCATACCAGATGTCAGAGGTGGTGTTGACATTGGTATAGGAACGGTGCACTACGTCCTTGACGGAATCTCAGTGTCTGGGTGTGATGTTCCAGAGCCTTCAGTGGAGTTCTATGAGGGCGTGGGACTCAAGGCTGTGATCAGTGGCCTCAGCATTTCAATGAGTGGAAATTGGCACACACGTTTTGGCATCATAACCGATGGTGGCTCATTTGACCTGGCAGTGTTCAATGTGGACGTGACCTCTGTGGTGCAGATAGGAAGTGATCAGAGTGGACACATTTCTATCTCCAGCGAAAACTGTGATGCCAGTGTCGGTGAGGCATCAATCAATTTCCATGGAGGAGCCAGTTTGATCTTCCAGCCATTTGTGAGCCTTTTCCACCATCGCATTAAAGCTATAATTGAGGAAAGAATCTGCccattggttgaagagcatgttaCCGATTTGGAGCGACATCTATCAGAAATGCAAGTGTCCTTCAAGGTCAATTCTGCTCTAGTTTTGGACGTCCCCCTCACTAACTCACCCCTCGTCGATTCTATTAGCCTTGGTCTGGATTTGAAGGGTGAGTTCTACAGTGTTCAGAGTCACACAGATCCTCCTTTTAAGGCCGAGCCTTTTAATCTGCCAGAGGACAAAGGCCACATGCTCTCCCTGGGCCTGTCTGAATTCACTGTCAACTCTGCCTCCTATGCTTACTTCTCCGCTGGACTCCTGCAGGCCCAAATAAACGACagcatgATCCCCAAGACCTCTCCTTTCCGTCTCAACACAACCTCCTTCGGGCCTCTCATCCCTCAGCTTCCCAAGCTCTTCCCCAACATGCTGATGGAACTGCAGGTGTATGCCAGGAACGTTCCAATATTTTCCTTCCAGGCTGATAAGGTTACAATGGAATTTCCAGGTGCTGTTAAGGCCTTTGCCATCCAGCCAAATGCTTCACGGACTCCACTGTTCAAGCTCAATGTTGACTCCATTTTTAGTGGGATGATACGCATTTCAGAAGAGAAACTCAAAGGCTTGGTGGAACTAAGCAATTTTACCCTGACACTTGCATCAAGTGAAGTGGGAACATTCCAGACTGCAGCCCTGGAAAAGTTTATGAAGCTGGGGATGAAGATTACAGTGTTAGCTAAACTGAACGCCAAACTGGAGGAGGGCATTGTTTTACCCACCATGCACCACATCCATCTGGTTAACCCTGCGCTGAAGATCCAGCAGGGATTTGTGTCCATTGCATCAGACCTTGATGTTAAATCTGGCGAGGGAGAGAGCCTTTCTGAAGGGATTTACCATTACCGACTATATGCAGGTGACATTTCCACCTGGATGACAGCACATAATTAGCAAGACGGAGATGCTCTTCATCCGAGGGAATGCCTGCCCATTCTCAGAAATGAGATCATCTGAGATGATCACGTCGTTTACATTCCAGTCCTTGTCAGCTCCATATTTGACGACTTCAACTCACACCCTGTTGGAATCTCTGCATTATCAGATTCGCCTCTGTTATTAATCTCTATATTGTAATCAAAAAAAGTGTTTCAAAATGCTGTACTTTTATTAATATATATGTTCAGATCATTCTTGAGAAATAAGGGGTGTAATATCTCCAGATGGGTGTGTGGttgtcatgccctggccatagagagacttttattctctattttggttaggccagggcgtgactagg

Function

symbol description
bpi Enables lipopolysaccharide binding activity. Involved in several processes, including negative regulation of cytokine production; negative regulation of macrophage activation; and response to bacterium. Located in cytoplasmic stress granule. Implicated in Crohn's disease. Biomarker of severe acute respiratory syndrome.

NR:

description
lipopolysaccharide-binding protein-like

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566584.2 True 1973 mRNA 0.45 17 55755130 55769029

Neighbor

gene id symbol gene type direction distance location
LOC110492344 NA coding downstream 9647 55742140 ~ 55745483 (-)
LOC100170209 LOC100170209 coding downstream 62318 55671464 ~ 55692812 (-)
LOC110492342 LOC106566692 coding downstream 105715 55646145 ~ 55649415 (-)
LOC110492339 rae1 coding downstream 116659 55633814 ~ 55638471 (-)
LOC110492341 LOC106571981 coding downstream 122225 55626915 ~ 55632905 (-)
LOC110492348 viaat coding upstream 14779 55783808 ~ 55787739 (-)
LOC110492352 nua4l coding upstream 55126 55824155 ~ 55826646 (-)
LOC110492353 nua4l coding upstream 75656 55844681 ~ 55847496 (-)
LOC110492354 LOC106566769 coding upstream 116354 55885383 ~ 55888359 (-)
LOC110492355 LOC106566701 coding upstream 127157 55896186 ~ 55908040 (-)
G1390863 NA non-coding downstream 7641 55747048 ~ 55747489 (-)
G1390862 NA non-coding downstream 8615 55746277 ~ 55746515 (-)
G1390856 NA non-coding downstream 21757 55733173 ~ 55733373 (-)
G1390855 LOC106566694 non-coding downstream 23640 55731238 ~ 55731490 (-)
G1390873 NA non-coding upstream 7124 55776153 ~ 55777082 (-)
G1390877 NA non-coding upstream 12217 55781246 ~ 55781400 (-)
G1390876 NA non-coding upstream 12500 55781529 ~ 55781881 (-)
G1390888 NA non-coding upstream 29188 55798217 ~ 55804675 (-)
G1390893 NA non-coding upstream 42616 55811645 ~ 55813087 (-)
G1390030 ifrd2 other downstream 768867 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1209887 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 2022215 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2722209 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 3182823 52566433 ~ 52577143 (-)
G1391586 NA other upstream 295474 56064503 ~ 56064862 (-)
G1391624 NA other upstream 456385 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 512023 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 655243 56424272 ~ 56437279 (-)

Expression


Co-expression Network