LOC110492359 (LOC106566705)


Basic Information

Item Value
gene id LOC110492359
gene name LOC106566705
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55955040 ~ 55965473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566605.2
ATGTCGTCACCATTTTATCCCCATTTACAAACCACACATATTGATGGTGGTAAATACATCTATTTTTATTTGAGAAAAATATAAAAACGTTTATTTTGGCGGTGCTTACTCTAAGGCGGCCATATGAACAATAAGACAAACgcatgtagctagctaagcaaTCTGTTTTATTTTTCTTGAATAACGTGGTATTTGTTATTCCTTTTCTGTACATTGACAGTATAATGGTCTTGTATCTGTGTTAAACGATAGCAGGGAGTATAATAGAGGCAAAGCCACTGATGTGAGAGTAATTTGACCAGATGGCCATGCAGTGTTAGCTCATTCCTGGGAAAATAGCAGAGTATGTCTGGGCAAAAGCTATTATTCAGAATGGTGATGGAGAAATCCACATAGGCCTACAATAATTATAGGTTTCACTTGTATAATCGAATTTCCTCCCCAAAACTGAAAGGAGTCTATGATGTAACAAAGTATATGAcgtaatttattattattattatgttagtGTGTTTCAAAGTTCTCCGTTCTGAAAGAATGAGACTTTGCCTCGGCTTCATCAAAAAGGTGTATTTTTTGGTActtaatgtgtatttatttaaagagccCATGAGATAAATAGGAGATTATATCATATCTATTTTTCTTTCAAAAGTATAtctatttgtatttatattttcagAGAAATAGTTATTTATCATAGGGGAAAATGGAGGAGAAACCAACTATGAGTGATATCGATTTGGACAAGATCCTTTCTACACCTCAAGAAGTACCACATTCCGTTGAGGTGGTACTGAGGAAATTGGAAATTGCTGAAATGGGTCGAGCTAAACGAGACATGGCAGGGAGACTGCACGTGATCCTGAACAGTGTAAACAAGGCGCTGTGCCGCATGCGCTTGGCCTCggctgtagaggaggaggatgatgaccTGATAACACAATCACAGCATCTGGAGGAGAAGCGCAGGCGTGGCCAGCAGCTCGTCACTATCCAAGCATTCCTACAGTCCAGCCTGGACAAGGAAAATGAGCTCAGCGTGGTCCTCCAGTGGCTCAGAAACATGAACCAGGagctggtggaggtggaggaggacgaGGACTTCCGGGAGGTGGATGGTATCACTGAGGAATGGGTTGAGGAGATGCAAGACAAGATCCAGAGTTTCATGTCGGACATCCAAGCTTGCATTGTACGTCTTCACGAGCTTTGTGGATTCCTCTTTGAACTCGACACCAGGAAAACCAAAAAGAAAGAAGCAGAACATAAGAAGGGAGGTGTGTGGCACTGGTGGCTGGAGTCAAAAGTCGATGCCAGGACGATACTGAAGATCCAGGAGCTGCAGCCGCCCACAGTGGACCGCATGATGGCGGAGCCCAGCCTGGCCACCAAGTCTTCCACAGATCTGTCCTTCATGCTGGGCGACATCTCCAAGTCCATGTCCTGCAACAAGGCCATGAGCATGGCCTTTAAGTTCATTCAGACGGGGCTCCACAACCTAAACGAGGCTCTGCAGGAGCGCACAGGCGAGGCCCACAAAGCCCAAGCCCAACTGGATGAGATGAAGGCTGATGACTGCCGTGCTAACCTGGCCCGTGCCAAAGCAGAGCTGGAAGGGGGCAAGACAAGGATCACCAAACTGGAGGGAGATAACTATAACCTTCAGGAGGAGATTGCAGCGCACATGTTCCAGATCCACAAGCTGGAGGGGATGGTCAGGTCAGGTCAACAGGGTTCTGTGATTAAAGTGATTGAGCCGATGATGGAATTCCCCATGACTCAGAGCCAAACCCAGCCAGAGAGCACCTCAGTCCCATTCAATCCGAAATATCCCAGATGGCCCCCTCCGTCTAAGAAGGAGCAGAAGCCAAAGATAGCCCCATCAGTGGTGGAATCACAGCTACCCAAGAGCCCACCCAAGACTGCGGCTGGGACGGAGCCAGAGTCCATTGAGGAGGAGTATGTCGAAGAGGAGATACCTCCCACACCTTCCCCTGTGTCTGAAGAGGAGATCAAGCCCGAGCCATCACCTGATGAATTGGACCTCTTTGAGGCCATGGAGAAGAACAGCACCAGCCTCTTGGATGGCTTCCAGTCATCTGTGTTCAACATAATTGAAAAGTCCCTCAGTGTTAAGGGTATAGGCCTAGAGGCAGACAAGGCCAACGATGCCATCAAACTCTACATCATCCTTCAGAAAACCATCCGAGACTCCTTCAACAACATCACCTCCAAACTCCATGGGAAATTTACAGACAGCATCCTGAACATGCCGTTTGAGGAGGACGCCACCAAGTCACCAGGGGACATGCTCAAAGAGATCAACTCTATGTTCGTCAGCCATGACCAGAACATTGAAAGTTTGGGCGCCAATGTGCACATGCTCATGAAAGAAGAAGACAAGAACGCCAAGTCTGCTTCCAAGAAAGGACCCCACCAAGAATGCCGTCACTCTGTGTCTGAGGTCCTGATCCAGTTGAAGAACATCAACAACATGAGCAAGCAGCAGACCTGTAAGATGCGCCTGGCCCTGGAGAACCTCATAGACATGAACAACAGGTTGGATAATGAGCCCAAGACTGAGGAGGAACAGCCATCCACCAGCCATTTCTCCATCTCGTCCTCTGACAGCTTTGTAGAGGAAGAAGAGATCAGAGTGGAGAAGAAACGCCACCACCACATCGAGAAAACTGTCAAAGTACCGGTAGAGAAGCGAATCAAGAGGAGACATACTCCACATCAGACAACGAGGCAAGTACTGAAACCCAGACTTATAGAGACAGCCAACCAGGGGGACATGGAGCGGTATAAGATGGAgattgaggaggaggggaggaagatagAGAAAACGGTGATGGTGGGGGCGACCTACCAGGTGAATGTGGTGTCTCAGAGGACCAACCTGAATCTCCTGAGGCAGGCGGCGATCAGCGGGGAGATCTCCACTGAGCTGTACAGCATGGCCAAGGACCTCATCACACACATTCTGGGCATGGATGAGATTAGACTGGCCTGCCTGCTCCGCAAGTTCATGGCCTACAGATCAGTGCAGCAAGTCCGTTACAATCTGAATATGCAGTTGGTTGCTGCTCGGGAGCTAAAGGATGGACAGTCGGTAAAAGAAATATACTCCTTCCTGACGAAACTGGATGTGTACCAGAAACGGACGTTGCGTCGGTGGAGTGCTAAACAAGCTGCTATTGAACACAGCCGCAAGACCTGCCTTGCTCGCATGCTATATCTTTTCAGTGAGATAAGACAAGACTACAACGTGCACCTGCTCACCCCGTTCCCGTGCTCCAGCCACTCCCGTCAACATCTGGCCATCAAGTCCCACAAGCTGACGTGGTCCCTGAACCCTGGTTGCCAGCGCCGCCACCTGCCCACTCCAGCCCAGACCCCCCACCTGGTGATGCCCGCCTCAGAGGCCGGACCCCTGAGCGGAGTCAGGGAGCTGTTGAGGGGTCAGCTACCCACACTGTGGCATTGTAATCTGACCATGAACAACATGCAGCTGGCCAGGAAGATGGCCTCTCCCCCCTGcaacctctcctccatccccctgctGATGGAGATGGACGTCAACCATAGCCGAGCCACTGCACTGCGCTCTGCACAGGGCAGgatgAGTGGGGGATAGCTGCATGCTTTCTAGAGGAGATGTGTTGATGCATAGGGAGATGATCTACTGAAGGGATCCAGTCTGTCACTAATCTCAAACGCCATCCATTAAAGAATATGTTCACTCCAGCCCCATGCTCCATGCCTCATTTACTCCCACACTGTAGTTTTCAGTGGCGTCACAGGACAGCTGAACAAGCACGTGTGCAAAAGGTACAGTTGTTGAGCTGTCGGGAAGAGGCATCCAGTGAATCCATTCacatagccacatcattttaaAAACCTTGTTGAGAGGGGTTTCCTCTCCCCTTCCATAAGATTTTCCCTCATTGTTTGCCTTGGTATCAGGACTGGACATGGGTTGATTCCTACAGTATGTTAATGCATGCAGAAGTACTGTATATTAGGGGTCTTTAACTGCTTCCTGAAAACCCTATTTGTTAGGTGCCTCCTAAGAAGAGGTAGGTGCacgagtcaggagcaggagagcaaggAATTCCAGTTTGCACAGTCGTTTATTATAAGTCCCAACCCACCAACAACAGGCGGGGAAAATCACGAAACACACGGAGGAGAAACCTCTACTCCTAACACAGTACCAACGGTACAACGACTGTGAGGGGAAAAAAACCCTGTGGCGcaaacacgcacccctaacagagctaacacagcaaaataatcccgcacaaagactAGCAGGCAGTGGAGGTTAATAAACCCACCGAAATTAACTAATCAGACACAGGTgataacaacaacagacagacacaaacgaaaaggaaaaatggatcggtggcagctagtaggccggcgacgacgaccgccgagcaccgcccgaacagggagaggagccaccttcggtggaagtcgtgacactattAGAAGTGTATCTGGCTTTCCAGAGCAGTTCTGAGAATTCACTTTTTTTCTGTTTGCGCACCAGCAGGTGAAGACCGCTTATAGAGCAATTGTTGCAGCAGTAGCACAGTGACTACAAATAATAattcactcacagtcacacacaatataccaatcgaaaatcaaatcaagaatcggctttctattccgcaacaaagcctccttcactcacgccaccaa

Function

NR:

description
uncharacterized protein LOC110492359

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566605.2 True 4722 mRNA 0.49 7 55955040 55965473

Neighbor

gene id symbol gene type direction distance location
LOC110492355 LOC106566701 coding downstream 47000 55896186 ~ 55908040 (-)
LOC110492354 LOC106566769 coding downstream 66681 55885383 ~ 55888359 (-)
LOC110492353 nua4l coding downstream 107544 55844681 ~ 55847496 (-)
LOC110492352 nua4l coding downstream 128394 55824155 ~ 55826646 (-)
LOC110492348 viaat coding downstream 167301 55783808 ~ 55787739 (-)
LOC110492360 LOC106566706 coding upstream 20731 55986204 ~ 55998076 (-)
LOC110491116 LOC106566709 coding upstream 43715 56009188 ~ 56036787 (-)
LOC110492365 spry4 coding upstream 110730 56076203 ~ 56078237 (-)
LOC110492369 g6pd coding upstream 241339 56206812 ~ 56221578 (-)
LOC110492367 LOC106566716 coding upstream 265792 56231265 ~ 56236905 (-)
G1391097 LOC106566704 non-coding downstream 21349 55930006 ~ 55933691 (-)
G1391086 LOC106566702 non-coding downstream 39273 55913637 ~ 55915767 (-)
G1390914 NA non-coding downstream 106653 55848160 ~ 55848387 (-)
G1390893 NA non-coding downstream 141953 55811645 ~ 55813087 (-)
G1391127 NA non-coding upstream 41201 56006674 ~ 56008753 (-)
G1391597 NA non-coding upstream 120632 56086105 ~ 56086321 (-)
G1391621 NA non-coding upstream 258062 56223535 ~ 56223853 (-)
G1391623 NA non-coding upstream 264522 56229995 ~ 56230322 (-)
G1390030 ifrd2 other downstream 968777 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1409797 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 2222125 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2922119 53031932 ~ 53032921 (-)
G1391586 NA other upstream 99030 56064503 ~ 56064862 (-)
G1391624 NA other upstream 259941 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 315579 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 458799 56424272 ~ 56437279 (-)
G1391869 NA other upstream 573119 56538592 ~ 56540929 (-)

Expression


Co-expression Network