LOC110491116 (LOC106566709)


Basic Information

Item Value
gene id LOC110491116
gene name LOC106566709
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56009188 ~ 56036787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947343.1
TAGAAGGCACAGTGGACATAACCACGGTTCTTGCTCTGACGCGGTGGGTGTAAAGTGCCGGCTGGGGCCCCGCGTTGGATTCCACTTCGATTTTGGAAGGTTGACTGCATGGTTCCCTTGTAGTCTCTGGGAACACACATTACACACCACTGAAAGAGAGCTGCGTCTGCTCTGTCCCATCTTTTTCCTCACCCAAGGTCCTGCATGTCTAATATTTAGACATGTTCAGCTTTGTGGATTCACGGACTGTTCTGCTACTTGTAGCATCCCAAGTTGTTTTACTATCCATTGTCAGATGTCAGGAAGAGGATGACCACGTGGTGATTGGTGCTAAGGGCCAGAAGGGGGAACCCGGCGAGATTGCAGATGTTGTAGGAGCAAATGGACCAGCAGGCCCTATGGGCCCCTCAGGCGAGCAGGGACCTCGTGGATCAGCCGGAGCTAAGGGTGATAAGGGAAATGTTGGCCCCAGAGGCAGAGATGGCGAGCCTGGCACCCCAGGGAACCCCGGACCCCCTGGCCCACCCGGACCTAACGGACCTGCAGGCCTTGGCGGGAACTTTGCTGCTCAGATGGCTGGTGGATTCGATGAGAAAGCTGGAGGTGCACAGATGGGAGTGATGCAAGGACCTATGGGCCCTATGGGTCCCCGTGGTCCCCCTGGCCCTTCTGGAGCCCCTGGCCCACAAGGTTTCCAAGGTAAccctggagagactggagagccaggcccagcTGGCCCACTGGGACCACACGGACCACCCGGACCTTCTGGCAAACCAGGAAGTGATGGTGAGGCTGGCAAACCTGGAAAGGCTGGTGAGCGTGGACCTGCAGGACCTCAGGGAGCTCGTGGATTCCCCGGAACTCCTGGTCTTCCTGGAATCAAAGGACACAGGggTCACCCTGGTCTGGATGGAGCTAAGGGAGAAGGCGGTGCTGCTGGAGCCAAGGGTGAGGGTGGTGCTCCCGGAGAGAACGGCGCGTCTGGACCAATGGGACCACGTGGTCTGCCTGGCGAGAGAGGCCGTCCCGGACCTTCTGGCTCTGCTGGTGCCCGAGGTAATGATGGCTTGCCTGGCCCTGCTGGTCCTCCCGGGCCTGTTGGGCCTGCTGGAGCACCCGGTTTCCCTGGATCCCCAGGAGCCAAGGGAGAAGCTGGCCCCACTGGTGCACGTGGAACTGAGGGCGCACAGGGACCCCGTGGAGAGGCTGGTACACCCGGATCTCCTGGACCCGCTGGTGCCTCTGGCAACCCTGGTACTGATGGTATCCCTGGAGCTAAAGGATCTTCTGGCGCTTCTGGAATTGCTGGTGCACCTGGTTTCCCCGGACCCCGTGGCCCCCCCGGACCTCAGGGAGCAACAGGACCTCTTGGACCCAAGGGACAGTCTGGAGACCCCGGTATTCCTGGCTTCAAAGGAGAGGCTGGTCCCAAGGGAGAGCTTGGCCCTATAGGTCCCCATGGCGCCCCTGGCCCCGCTGGCGAGGAGGGCAAGAGAGGAGCAAGAGGAGAGCCCGGTGCTGCTGGACCACTTGGACCTCCTGGCGAGAGAGGAGCTCCCGGTAACCGTGGTTTCCCAGGTCAGGATGGTCTTGCTGGTTCTAAGGGAGCCCCTGGTGACCGTGGTGTTCCCGGTGTGGGTGGGCCTAAGGGAGGCACTGGTGACCCCGGCCGCACAGGAGAGCCTGGTCTTCCTGGAGCCAGAGGTCTCACTGGTCGCCCTGGAGATGCTGGTCCTCAAGGCAAAGTTGGTCCTGGTGGTGCTGCTGGTGAGGATGGTCGCCCCGGCCCACCTGGTCCTCAGGGAGCCCGTGGCCAGCCTGGTGTGATGGGATTCCCCGGACCAAAGGGAGCCAATGGTGAGCCTGGCAAGGCAGGAGAGAAGGGTCTTGTGGGTCGTCAAGGTCTGATCGGTCTGGCTGGTAAAGATGGTGAGACTGGTGCTGCTGGACCTCTTGGCCCTCCTGGAcctgctggagagagaggagagcaaggaGCTGCTGGACCTTCAGGCTTCCAGGGTCTGCCCGGACCTGCTGGCCCCCCAGGAGAGGGAGGCAAGCCTGGTGATGCGggtgTTCCTGGAGaggctggtgctgctggtgctacAGGACCTAGAGGCGAGCGTGGTTTCCCTGGTGAGAGAGGCGGTGCTGGACCTCAGGGTCTGCAGGGACCTCGTGGACTCCCTGGAACTCCTGGAAGTGATGGACCGAAGGGAGCCATTGGGCCAGCTGGTGGTGCTGGAGCTCAGGGACCCCCAGGTCTGCAGGGTATGccaggagagaggggagctggTGGAATCTCCGGCGCCAAGGGTGACAGAGGTGACAATGGAGAGAAAGGACCTGAGGGCGCTTCTGGAAAAGACGGTTCTAGAggTTTGAGTGGTCCCATTGGTCCTCCTGGCCCAGCTGGTCCCAATGGCATAAAGgGTGAGGGTGGACCTTCTGGCCCAACTGGAGCTGCTGGTGCCCGTGGTGCTCCTGGTGACCGTGGTGAGGGTGGTCCCCCCGGGCCTGCTGGCTTCGCTGGGCCACCTGGTGCTGATGGTCAGCCTGGAGCCAAGGGAGAGTTAGGCGAGGCTGGACAGAAGGGAGATGGTGGTGCCCATGGACCTCAAGGACCCTCTGGGGCCCCTGGACCTGTGGGTCCCACTGGTGTTTCTGGACCTAAAGGAGCTCGTGGTGCCCAGGGGGCTTCTGGTGCTACTGGTTTCCCTGGTGCTGCTGGAAGAGTTGGTTCTCCCGGGCCTAACGGTAACCCTGGTGCTGCTGGCCCCGCTGGTCCTGCTGGTAAAGACGGTCCTAAGGGAGTTCGTGGTGACTCTGGAACCCCAGGAAGACAGGGAGACGCTGGGCTGCGTGGAGCTGCTGGAGCCCCTGGCGAGAAGGGAGATGCTGGAGGGGATGGTCTCCCTGGTCCCGATGGTCCTTCAGGTCCCCAGGGTCTGGCTGGGACACGTGGTATTGTTGGTCTGCCTGGGCAGCGTGGAGAGAGGGGCTTCCCTGGCCTTCCTGGTCCTTCTGGAGAGCCCGGTAAGCAGGGAGCTCCTGGTGCTGGTGGTGACCGTGGACCCCCTGGGCCTGTGGGGCCTCCTGGACTGTCTGGACCTTCTGGCGAGCCCGGAAGAGAGGGCAACGCTGGATCTGATGGGCCCCCTGGTAGAGATGGATCCACCGGAGTCAAGGGTGAGCGTGGTAACACTGGTCCTGCAGGTGCACCTGGCGCCCCTGGCGCTCCCGGTGCCCCCGGCCCTGTCGGCCCCCTGGGCaagcagggagacagaggagagggaGGTGCTCAAGGGCCTGCCGGACCCGCTGGGCCAGCTGGCGCTAGAGGAATGGCTGGACCCCAAGGACCCCGTGGAGACAAGGGAGAGGCTggcgagacaggagagaggggacagaaggGACACCGTGGCTTCACCGGTCTGCAGGGTCTTCCCGGACCTCCAGGCTCCGCTGGAGACCAAGGAGCTGCTGGACCTGCCGGACCTAGTGGTGCTAAGggaccccctgGCCCAGTCGGCCCCGCTGGTAAGGATGGATCTAACGGTCAGCCTGGACCCCTCGGACCCCCTGGACCTCGTGGTCGTTCTGGAGAAACTGGCCCTGCTggtCCACCTGGTAACCCCGGACCCCCTGGTCCTCCTGGTCCTCCCGGCCCTGGCATCGACATGTCTGCCTTTGCTGGCCTGTCTCAGCCTGAGAAGTCTCCGGATCCCCTGAGGTACATGAGAGCTGATGAGGCGTCCAGCTCCCTGAGGCAGCACGACGTGGAGGTGGACTCCACACTCAAGTCCCTCAACAACCAGATCGAGAACCTGCGCAGCCCTGATGGTAGCCAGAAGAACCCTGCCCGCACCTGCAGAGACCTCAAACTGTGCCACCCAGAGTGGAAGAGCGGTGACTACTGGGTGGATCCTAACATTGGTAGCACAGCTGATGCCATCAAGGTCTTCTGCAACATGGAGACTGGCGAGACCTGTGTGTACCCCAGCATAGCCAACGTGCCTCAAAAGAACTGGTGGACAAGCAAGAGCAACGACCGCAAACATGTCTGGTTCGGAGAGACCATGAATGGAGGATTCCACTTCAGCTACGCTGAGGACGGTACCAACGCTGCCAGTATCCAGCTGACCTTCCTGAGGCTGCTGTCCACGGAAGCGTCTCAGAGCCTCACCTACCACTGCAAGAACAGCGTGGCCTATATGGACACATCCACGGGCAACCTGAAGAAGGCTCTGCTGCTCCAGGGCTCCAACGACGTGGAGATCAGAGCTGAGGGAAACAGCCGCTTCACCTACAGCGTTGTGGAGGATGGCTGCAAGaaacacacaggccAGTGGGGAAAGACTGTCTTCGAGTACAAAACACAGAAGACCTCCCGTCTGCCCATCGTGGACATTGCTCCCATGGACATTGGAGGAGCGGACCAGGAGTTCGGTGTGGATGTGGGAACAGTCTGCTTCTTGTAAAGTCAAATAAACACAACGGCAAAAAAACTCAAATATGAAAGAAATAACTCAACTAtgaaacaaaacacacactctaCAAAAAAGAAGActgactttaaaaaataaaaaaaagaaggaaaCTGTTTCTCTGGCCAAGTGCTCTCCAAGTTGTACTCCATGGATGTTAGCACTGAAGGGCACCGGCGTTCCAGCATTCCCTGTCAACCCACTTCTGGAGATCCAGTCATGTTTCCCATGGCTCACAGTTGACGGGAATGAGCCAGGAGGAAGAGGGACCAAGCCAAGAGACGAGTGATGAAGAAACAGAAACATGACTCGATGTCACTTATTTATTGTCTAAACCTTACATGGGCAGAGGTTAGGTACAATAGGACTGGGGAGCTTCACCATAAGAGCAACACAAGCCCATCCTACCACAGAAGACCTAGAACCTCCCACTTCtactccacctccctcccccgtCTCCTCCCCAACCTAGCTACAAATATGCCATTTTGAATCAATGTGGACCAAAACATATTTTCAGTTATTATAAGCAAGTCCAAGTGCTCCAAATGTTTTTTACCATCAAGACAAGGAGAGAAACTTTTACTGTGCATTATAAATCTGTGGTTCTGTGTTGTAAAAGTGTGTTTATAAACAGCCAGatggttttatatatatttccacattgtgtgtgtacatgtgtctaGATATATGCACACCAACACTTTTTGCAAAATGAGGATTCATTTGGGATGTATTTTTCCATTGTCTTTTACCCTTTTCACTGTCCATTAGAGGAAAATATCTTACTCAGTTCACAAACAACCTACATTTTCTAATAAAATTGTAGTCATCCTGATTGTTTAAAGCTACCTCACGCTGAAAAACACAGTGAAAACATTCACCTTAAATCTTGAGCTGACCAACATGTGCTTTTGGGTGGAACTGGGGCTGAACGGCCATCTTTGCTTTGGGTTGCTCCATCTTCAGAAGGTGCTATGAGTTCTAGAATTCAGTCTCTGcccattgtcccccccccccccacccccacccaatTCCCACTAGCCTCACACCACACACCCCACCCTGGAGGACAGGTGCAGCCAGGCAAAGCAGAGAACCAAGGGACTTTGGGTAGTACCCTATTGAGTCCATGCCCCACAAATAGAATCACGGGACTCCAAGGAGAGCCGCCCAAACAACCAGGGTgggttgtctctgtgtgtgtgagggtgtgtatatttttttgttatgatcatgatcttttttttttgttttgtttattttgttacACTTTTAATTGATGTAAATTGGAAATAAAAAGAAAATACCAAGTAACAATTAAGTTGACTTTTAACTGAGTTTCTTTTAAATAAGTACAGAAAAGGCATGAGGGTTGGATAGCTTTTTCTGTTAACTGAACCCAAGGCCTGTGTactttgtttgttgttgttgagaggtCAGTTACCCGTTTTGAATGTATGTGAGTGCATGGCATGTGTGTAAgtatgcatgtgtgagtgtgcgactgtgtgtgagtgttttcCTATGAGAGAATGTCATAACACAGAAATGAAAGTACTGTATTCATTCACTGGTTTCAGGGTGGCGTCAGGCATGGTTGGCTTCTTTTTGTTAGAAGGCATAAATACAGTAGAGAAAATGATGTGCTGAATGGAATTGAAGTATTTTGTACATTAACAGTAATGTTTTAATGATGCTTCAAGACATGGCCACGTAGGTGTTTGTCAGCGTTTGGTGATCCGCTTGTCTGTTTCCCTTATCCTCTACACTGCCGTtctcctctctgtacctctccatATCTTTCTTCTGAGCAATAAAAATTAGACTGAAAAGAC

Function

NR:

description
collagen alpha-1(II) chain-like

GO: NA

KEGG:

id description
K19719 COL2A; collagen type II alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947343.1 True 6328 mRNA 0.56 53 56009188 56036787

Neighbor

gene id symbol gene type direction distance location
LOC110492360 LOC106566706 coding downstream 11114 55986204 ~ 55998076 (-)
LOC110492359 LOC106566705 coding downstream 43715 55955040 ~ 55965473 (-)
LOC110492355 LOC106566701 coding downstream 101148 55896186 ~ 55908040 (-)
LOC110492354 LOC106566769 coding downstream 120829 55885383 ~ 55888359 (-)
LOC110492353 nua4l coding downstream 161692 55844681 ~ 55847496 (-)
LOC110492365 spry4 coding upstream 39416 56076203 ~ 56078237 (-)
LOC110492369 g6pd coding upstream 170025 56206812 ~ 56221578 (-)
LOC110492367 LOC106566716 coding upstream 194478 56231265 ~ 56236905 (-)
LOC110492371 adcy6 coding upstream 203976 56240763 ~ 56293503 (-)
LOC110491118 LOC106571944 coding upstream 285904 56322691 ~ 56338540 (-)
G1391127 NA non-coding downstream 435 56006674 ~ 56008753 (-)
G1391102 NA non-coding downstream 7557 55943176 ~ 56001631 (-)
G1391097 LOC106566704 non-coding downstream 75497 55930006 ~ 55933691 (-)
G1391086 LOC106566702 non-coding downstream 93421 55913637 ~ 55915767 (-)
G1391597 NA non-coding upstream 49318 56086105 ~ 56086321 (-)
G1391621 NA non-coding upstream 186748 56223535 ~ 56223853 (-)
G1391623 NA non-coding upstream 193208 56229995 ~ 56230322 (-)
G1391693 NA non-coding upstream 203529 56240316 ~ 56240670 (-)
LOC110492352 nua4l other downstream 182557 55824155 ~ 55826646 (-)
G1390030 ifrd2 other downstream 1022925 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1463945 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 2276273 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2976267 53031932 ~ 53032921 (-)
G1391586 NA other upstream 27716 56064503 ~ 56064862 (-)
G1391624 NA other upstream 188627 56225414 ~ 56226061 (-)
G1391796 LOC100286403 other upstream 387485 56424272 ~ 56437279 (-)
G1391869 NA other upstream 501805 56538592 ~ 56540929 (-)

Expression


Co-expression Network