LOC110492365 (spry4)


Basic Information

Item Value
gene id LOC110492365
gene name spry4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56076203 ~ 56078237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947344.1
CACTGAGCGACGCGCCCTTTGCTATGCATTAGTTTTAGCGCATAGCACATCTGAGGTCCGAGCAGGGGAGATTGAATAATAACAACACTGACCACGCTCTCACGACCACCTACTTGTATTGCCTTGACATCCACACGTGGCTGCCCGTATGAGATGTGTCATGCCGATCATAAATACCCGACGTCCTGCCAGCTACGAGCTGCAGTTTAAGCTGGATGACAGGACAGCCCACAGCAGTCTGGACCTCTTTAAGAAGGACACAGGCGTCATCTACCGCATCTTGGGCCTAGACCCCAGCCATGTCCAACAAAACCCTGAGCGCTTCCGGGATTGGGCTGTGGTGTTCGGAGACGGGCAAATCACAGGTGGCCGCCACTACTGGGAGGTGACGGTGGAGAAGTCCTCAGAGTTCCGTTTGGGTGTGGCCTTGGTGGCAATGTCAAGGGATGACTGTGTGGGCACCAACAGCTCCTCCTGGGTGTTCGGCTACGTCCAGCGTAAGTGGTTTGCAATGACAACCAACCAGAGGGTGCCGGTGACTCTGGTGGGGAAGCCTGACCGCGTGGGCATCCTGTTGGACTACGAGGCCGGCCTGATAAGCCTGGTGGACATCCCAAAGGCCAAGGTGATCCACAGCATGAGGGCCATGTTCAGGGGGCCTCTCTGCCCAGCGTTTGGCTTGTGGGATGGAGAGCTGCTTACACACTCAGGTCTGGGGGAGCCCGAAGGCTTGAAGTGAAGCATCTCTACTGATGACAATATGGTAGGGAGGTAGGAATAGCTATGTACATTCTGACAACTTGGTTTTTGTAAACTGAACACTTACAGCAGGCAGCACTTGAAAATGTCTTTCAAATCTCCTATGAAAAGCAATATTCTCCATCAGGATTTGGAGAGCAGGGAGTTTGTCCAGTGTATCATTTTATTTCTGTACAGACTCAGGCAAACTCATCACAATAAGCTATTTTTTTGTTACCTCTtgtgtaatatttttttttaagtctgAAATAAATGGCAACAATATGAAGCTG
>XM_021566620.2
CCTTCATTTTGTCCACCATATTTGGCTCTGCATTGTAAGTGAATATGGCAGTGCTCTTTGGCATGGGACATTATTGTCGCCTGGCAGGACGAGTTATGAGCGCACTGTCCCGCAGACAAACGCGTGGTACGCTTCTTCCAGCGACAAGATGGTATAGCACCCAAACGACTGGCGATAGTGGCTGCCCGTATGAGATGTGTCATGCCGATCATAAATACCCGACGTCCTGCCAGCTACGAGCTGCAGTTTAAGCTGGATGACAGGACAGCCCACAGCAGTCTGGACCTCTTTAAGAAGGACACAGGCGTCATCTACCGCATCTTGGGCCTAGACCCCAGCCATGTCCAACAAAACCCTGAGCGCTTCCGGGATTGGGCTGTGGTGTTCGGAGACGGGCAAATCACAGGTGGCCGCCACTACTGGGAGGTGACGGTGGAGAAGTCCTCAGAGTTCCGTTTGGGTGTGGCCTTGGTGGCAATGTCAAGGGATGACTGTGTGGGCACCAACAGCTCCTCCTGGGTGTTCGGCTACGTCCAGCGTAAGTGGTTTGCAATGACAACCAACCAGAGGGTGCCGGTGACTCTGGTGGGGAAGCCTGACCGCGTGGGCATCCTGTTGGACTACGAGGCCGGCCTGATAAGCCTGGTGGACATCCCAAAGGCCAAGGTGATCCACAGCATGAGGGCCATGTTCAGGGGGCCTCTCTGCCCAGCGTTTGGCTTGTGGGATGGAGAGCTGCTTACACACTCAGGTCTGGGGGAGCCCGAAGGCTTGAAGTGAAGCATCTCTACTGATGACAATATGGTAGGGAGGTAGGAATAGCTATGTACATTCTGACAACTTGGTTTTTGTAAACTGAACACTTACAGCAGGCAGCACTTGAAAATGTCTTTCAAATCTCCTATGAAAAGCAATATTCTCCATCAGGATTTGGAGAGCAGGGAGTTTGTCCAGTGTATCATTTTATTTCTGTACAGACTCAGGCAAACTCATCACAATAAGCTATTTTTTTGTTACCTCTtgtgtaatatttttttttaagtctgAAATAAATGGCAACAATATGAAGCTG
>XM_021566618.2
AGACAACCTGAGTGAACTACCTTCATTTTGTCCACCATATTTGGCTCTGCATTGTAAGTGAATATGGCAGTGCTCTTTGGCATGGGACATTATTGTCGCCTGGCAGGACGAGTTATGAGCGCACTGTCCCGCAGACAAACGCGTGGTACGCTTCTTCCAGCGACAAGATGGTATAGCACCCAAACGACTGGCGATAGTGGCTGCCCGTATGAGATGTGTCATGCCGATCATAAATACCCGACGTCCTGCCAGCTACGGTGACCCTGTGTTGATTAACAATGTTATTTCAAAGGTTTACAACATAGATTTCAATTATCGACAGGATGTCACTCTGTTTTGGCTTGTTATATTGTATAACGCTTTGGAGCTGCAGTTTAAGCTGGATGACAGGACAGCCCACAGCAGTCTGGACCTCTTTAAGAAGGACACAGGCGTCATCTACCGCATCTTGGGCCTAGACCCCAGCCATGTCCAACAAAACCCTGAGCGCTTCCGGGATTGGGCTGTGGTGTTCGGAGACGGGCAAATCACAGGTGGCCGCCACTACTGGGAGGTGACGGTGGAGAAGTCCTCAGAGTTCCGTTTGGGTGTGGCCTTGGTGGCAATGTCAAGGGATGACTGTGTGGGCACCAACAGCTCCTCCTGGGTGTTCGGCTACGTCCAGCGTAAGTGGTTTGCAATGACAACCAACCAGAGGGTGCCGGTGACTCTGGTGGGGAAGCCTGACCGCGTGGGCATCCTGTTGGACTACGAGGCCGGCCTGATAAGCCTGGTGGACATCCCAAAGGCCAAGGTGATCCACAGCATGAGGGCCATGTTCAGGGGGCCTCTCTGCCCAGCGTTTGGCTTGTGGGATGGAGAGCTGCTTACACACTCAGGTCTGGGGGAGCCCGAAGGCTTGAAGTGAAGCATCTCTACTGATGACAATATGGTAGGGAGGTAGGAATAGCTATGTACATTCTGACAACTTGGTTTTTGTAAACTGAACACTTACAGCAGGCAGCACTTGAAAATGTCTTTCAAATCTCCTATGAAAAGCAATATTCTCCATCAGGATTTGGAGAGCAGGGAGTTTGTCCAGTGTATCATTTTATTTCTGTACAGACTCAGGCAAACTCATCACAATAAGCTATTTTTTTGTTACCTCTtgtgtaatatttttttttaagtctgAAATAAATGGCAACAATATGAAGCTG
>XM_021566619.2
cccaaagaagaagaagaattgtTGAAAGACAACCTGAGTGAACTACCTTCATTTTGTCCACCATATTTGGCTCTGCATTGTAAGTGAATATGGCAGTGCTCTTTGGCATGGGACATTATTGTCGCCTGGCAGGACGAGTTATGAGCGCACTGTCCCGCAGACAAACGCGTGGTACGCTTCTTCCAGCGACAAGATGGTATAGCACCCAAACGACTGGCGATAAGCTGCAGTTTAAGCTGGATGACAGGACAGCCCACAGCAGTCTGGACCTCTTTAAGAAGGACACAGGCGTCATCTACCGCATCTTGGGCCTAGACCCCAGCCATGTCCAACAAAACCCTGAGCGCTTCCGGGATTGGGCTGTGGTGTTCGGAGACGGGCAAATCACAGGTGGCCGCCACTACTGGGAGGTGACGGTGGAGAAGTCCTCAGAGTTCCGTTTGGGTGTGGCCTTGGTGGCAATGTCAAGGGATGACTGTGTGGGCACCAACAGCTCCTCCTGGGTGTTCGGCTACGTCCAGCGTAAGTGGTTTGCAATGACAACCAACCAGAGGGTGCCGGTGACTCTGGTGGGGAAGCCTGACCGCGTGGGCATCCTGTTGGACTACGAGGCCGGCCTGATAAGCCTGGTGGACATCCCAAAGGCCAAGGTGATCCACAGCATGAGGGCCATGTTCAGGGGGCCTCTCTGCCCAGCGTTTGGCTTGTGGGATGGAGAGCTGCTTACACACTCAGGTCTGGGGGAGCCCGAAGGCTTGAAGTGAAGCATCTCTACTGATGACAATATGGTAGGGAGGTAGGAATAGCTATGTACATTCTGACAACTTGGTTTTTGTAAACTGAACACTTACAGCAGGCAGCACTTGAAAATGTCTTTCAAATCTCCTATGAAAAGCAATATTCTCCATCAGGATTTGGAGAGCAGGGAGTTTGTCCAGTGTATCATTTTATTTCTGTACAGACTCAGGCAAACTCATCACAATAAGCTATTTTTTTGTTACCTCTtgtgtaatatttttttttaagt

Function

symbol description
spry4 Acts upstream of or within animal organ development and negative regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in cytosol. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural keel; and neural plate. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 17 with or without anosmia. Orthologous to human SPRY4 (sprouty RTK signaling antagonist 4).

NR:

description
SPRY domain-containing protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947344.1 False 1031 mRNA 0.51 3 56076203 56077981
XM_021566620.2 False 1072 mRNA 0.51 3 56076203 56078192
XM_021566618.2 False 1199 mRNA 0.49 3 56076203 56078211
XM_021566619.2 True 1027 mRNA 0.50 2 56076232 56078237

Neighbor

gene id symbol gene type direction distance location
LOC110491116 LOC106566709 coding downstream 39416 56009188 ~ 56036787 (-)
LOC110492360 LOC106566706 coding downstream 78129 55986204 ~ 55998076 (-)
LOC110492359 LOC106566705 coding downstream 110730 55955040 ~ 55965473 (-)
LOC110492355 LOC106566701 coding downstream 168163 55896186 ~ 55908040 (-)
LOC110492354 LOC106566769 coding downstream 187844 55885383 ~ 55888359 (-)
LOC110492369 g6pd coding upstream 128575 56206812 ~ 56221578 (-)
LOC110492367 LOC106566716 coding upstream 153028 56231265 ~ 56236905 (-)
LOC110492371 adcy6 coding upstream 162526 56240763 ~ 56293503 (-)
LOC110491118 LOC106571944 coding upstream 244454 56322691 ~ 56338540 (-)
LOC110491119 LOC106566720 coding upstream 274230 56352467 ~ 56359968 (-)
G1391127 NA non-coding downstream 67450 56006674 ~ 56008753 (-)
G1391102 NA non-coding downstream 74572 55943176 ~ 56001631 (-)
G1391097 LOC106566704 non-coding downstream 142512 55930006 ~ 55933691 (-)
G1391086 LOC106566702 non-coding downstream 160436 55913637 ~ 55915767 (-)
G1391597 NA non-coding upstream 7868 56086105 ~ 56086321 (-)
G1391621 NA non-coding upstream 145298 56223535 ~ 56223853 (-)
G1391623 NA non-coding upstream 151758 56229995 ~ 56230322 (-)
G1391693 NA non-coding upstream 162079 56240316 ~ 56240670 (-)
G1391586 NA other downstream 11341 56064503 ~ 56064862 (-)
LOC110492352 nua4l other downstream 249572 55824155 ~ 55826646 (-)
G1390030 ifrd2 other downstream 1089940 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1530960 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 2343288 53730164 ~ 53757019 (-)
G1391624 NA other upstream 147177 56225414 ~ 56226061 (-)
G1391796 LOC100286403 other upstream 346035 56424272 ~ 56437279 (-)
G1391869 NA other upstream 460355 56538592 ~ 56540929 (-)
LOC110492394 psma7 other upstream 1771437 57849674 ~ 57853907 (-)

Expression


Co-expression Network