LOC110492366 (LOC106566712)


Basic Information

Item Value
gene id LOC110492366
gene name LOC106566712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56091258 ~ 56189123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947345.1
TCTGTGTGCAGGACAGGTCCACTCCCTTGCACTGTGCTCTCACTGCCAGCTGCCAGTGCTAGACACTACTCATTATGAAAAAACCGCTCACAAGTCACAACTGACCAATCCAACCACGAAGCTCCCAGTCCCTAGGAACTTCTCCTGTCTCGGACCTCTCCCCTGCGGATATAGGACCACGGTACTGCCAACAGACAGTCGCAACAGAACGACGGAGATGAACTAGCTAGCCTACTCTTAAACAATGAGCTGAAGCTGGACAGTCAACACGGAAGAGACCTAGTTCACTCACTCATCTGCAACCGACGCTGGAATGACGGAACGTTGTCTATATTTTTCACCGCTGTAGGCTAATGCCTTGCACTTTGAGATCGGCTACCTGGACTTGATAAAACAGCGTCTCCCAACGCCGTACACTGAGGATGGGGACTTTTATACGGAAAATAGGAGCATTTTGGTGAACTCTTCAATCATTTGGTTTATGTTTGTTACTCTTACTGTGAATTCTTGAGCGTTTGACTTCGAGGAGGGAATCCTTGGTCTGTTTTTGCAACCCGCCTTTTGAATGATGCAAATCGACAGCAAATCTCGCGCTGGTTTTCCGCACGTTCGGGCGACTAGTCGTTAAATAGCTATTACTTTTAGTGACAGGTGCATTGCATTGGAGATGCCACATGTGCATGGTATGAATTTTATATGAAACACATTCCCATAGATCGCATATATTAAGTGCACCAATATTGACGATTGCATGTGTTTTTATTAGCTTGGAGAGATAGTTGAATATGTAGGCTATTGTGAGGTGTAGTAATTTACCTGCCTTCTGAACTGCAAACGATTTCAATGTCACTCAGCATTCTTTATAGCCATTAAGCGAGACTGTGAGCACAATGGAACTCAAAGTAGAATCCGAAGAAATGGACTGCAACCAGCCACCCCCAGTTGAGGCTTTTGCGCAAAACTCAACGCTGCACGGAATTTCGCACATTTTCACCTATGAGAGGGTCTGCATCAAGCGCTGTCTATGGGTCGTGTTCTTCCTTGGCTCCTTGACTTTCTTACTGTTTGTGTGCGTGGACCGAATACACTTCTACCTGGAGTACCCACACGTCACCAAACTGGACGAGATCTCGACCCCGGTGATGGTGTTCCCCGCTGTCACGTTCTGCAACCTCAACTCGTTCCGCTTCAGTCGCGTGACGCGCAATGACCTGTACCACGCAGGGGAGCTGCTAGCGCTGCTCAACCAGAGgtaTGAGATCAGGGACACCCATTTGGTGGAGGAAAGTGTTCTGGAGACCCTGAAGGTCAAAGCTGACTTCCACAACTTCAAGCCCCGTCCCTTCAACATGCGTGAGTTCTATGACCGCACAGGACATGACATCAAGGAAATACTGCTGGCGTGTCACTTCCGGGGGGCCGAGTGCAGAGCCGAGGACTTCCAAGTGGTGTTCACTCGCTATGGGAAGTGTTACACGTTCAACGCAGGAGGCGAGGGCCGCACCCCTCTCATAACTACCAAGGGAGGGATGGGGAACGGTCTGGAGCTCATGCTGGACATTCAGCAAGATGAGTACCTCCCTGTGTGGGGAGAGACAGATGAGACCTCATTTGAAGCTGGGATCAAAGTTCAGATCCACAATCAGGAGGAGCCACCCTTCATCGACCAGCTGGGCTTCGGAGTGGCACCTGGGTTCCAGACCTTTGTCTCCTGCCAGGAACAACGGCTGATATATTTGCCCCCACCCTGGGGGGACTGTAAGGTGACATGGATGGACTCAGAATTCTTTGAAACGTACAGCATCACCGCCTGCCGTATCGACTGTGAGACGCGCTACCTGGTGGAGAACTGTAACTGCCGCATGGTGCACATGCCTGGAGATGCCCCATACTGCACCCCTGAGCTGTACAAAGAGTGTGCTGATCCAGCTCTTGACTTCCTGGTGGAGAAAGACAatgatttttgtgtgtgtgagacgccGTGCAACATGACCAGATACAGCAAGGAGCTGTCCTTCGTCAAGATCCCCAGCAAGGCCTCTGCCAAGTATCTGGCCAAGAAATACAACAAGTCAGAGCAGTACATAGCTGATAATATCCTGGTTCTGGACATCTTCTTTGAGGCTCTAAACTATGAGACGATCGAACAGAAGAAAGCCTATGAAGTAGCAGGACTTTTGGGTGATATTGGTGGTCAGATGGGTCTTTTCATTGGAGCCAGTCTCCTAACTATTCTGGAGCTGTTTGACTACATCTATGAGGTGATAAAGTACAAGCTCTGTCGATGCTCAGAGAAGAAACACAAGCACAGCAACAACGACCAGGGAGCTGTTCTGAGCCTGGACGATGTGAAATGTCACGGAGGAGCAACCCAGAGGACGTCACCTGCTGAGCCAATCAGAACACAAGGAAGTAAGAAAATGGAGCATTTCAATTTAATTCAAAAGTGGACAGATGTCAGAGTATAAAGCTTGATAATGGGTAATATGTAACAATTCAATAGCACTGAAGTCACATGGGTGCAAGAGTAGTGCTAGCCACGTATAGCCTGCTGGATCATAATGACTGCAATGTCATGAAAGTGGCAATGTTAATCCATGTACACATTAAAATAGTTATTCTATTGTCTTCTAAGAATGTAATTTTACTTGGGCTACATTTAGATATAGCAAGCAGGACTAAGAGATTTTGGCTTTGGGTGTGTGATGGTGGGAAATGTCCTCGCAGTATATTGGCATGTTTGTCTGTGCTACAATTTTGGTCTGTTTGTTTgtatggttgtgtttatgtgcatgccctttttgagtgtgtgtgtgttttgagtgtATGTAATACTTCAAGAGTACACTTTCTCAAGTTAATGAATTGCAGTCCCGAAATTGGCTCCTTTTGTAATTTACTGCTTCTGTCCAATTGGCCAATTTGACATAATTCAATGAAGTTGATTTTTCATCTTGTATTAAAAAAAGTAATTATTCAATTGAAAAGATTGTTCACCATTTTCTAAGAGAAGTCAACATTTGTATTTTCTTACGTAAGAAGTGTGAAAGTTTTACAGCCAAATGAGTAGATGTGATAGAACTAGATGACGAGAGATGTCGATCCACTTTTTTGACAATGGAAATATGGCCTGACTCCCAAAAGTTAAACAATTGGACCACTGTTACTACAATATATTTGGGTAGGAACCATTGGAGGTAGCTAGGAGCACTTACTGAAACGATCTCTTATCACTCATGCCTCATTTAGCCATGCTAGATGTATTTATCATAGGAAAGGGGGAGTTGTGTGACAGTGTGTAACTGTGTAGTGTTATTCTCAAGCACAACAGTACCATGAACATGTAAATAAAATACTGCAAGGAAGGACTATGGATAATGTTCTGATGGTGGTTGCATAGTCTTGCCTAATGTTCTTGATGTAATTAATgtagccatgtgtatgtgatcttACTTTTGTTTTTCTATAAATACTATGCCTACCAGTTTACATGTTTTCAGATGTTTTATTTATCTAAAAAGCAACAATAAAGTATAATGACATTTCAA

Function

NR:

description
acid-sensing ion channel 1-like

GO: NA

KEGG:

id description
K04829 ASIC1, ACCN2, BNAC2; acid-sensing ion channel 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947345.1 True 3548 mRNA 0.45 11 56091258 56189123

Neighbor

gene id symbol gene type direction distance location
LOC110492364 LOC106566711 coding upstream 15857 56055330 ~ 56075401 (+)
LOC110492363 aaas coding upstream 82483 55998512 ~ 56008775 (+)
LOC110492361 LOC106566707 coding upstream 104424 55965514 ~ 55986834 (+)
LOC110492358 LOC106566704 coding upstream 145086 55920820 ~ 55946172 (+)
LOC110492357 LOC106566702 coding upstream 170870 55908677 ~ 55920388 (+)
LOC110492370 LOC106566713 coding downstream 872 56189995 ~ 56206301 (+)
LOC118939557 NA coding downstream 48672 56237795 ~ 56239773 (+)
LOC110491117 NA coding downstream 121486 56310609 ~ 56322498 (+)
prim1 prim1 coding downstream 210927 56400050 ~ 56412393 (+)
LOC110492373 LOC100286403 coding downstream 235064 56424187 ~ 56437287 (+)
G1391165 NA non-coding upstream 2886 56088072 ~ 56088372 (+)
G1391161 NA non-coding upstream 22334 56068689 ~ 56068924 (+)
G1391160 NA non-coding upstream 23407 56067571 ~ 56067851 (+)
G1390938 LOC106566709 non-coding upstream 39371 56009187 ~ 56051887 (+)
G1390934 NA non-coding upstream 229638 55861366 ~ 55861620 (+)
G1391249 NA non-coding downstream 35152 56224275 ~ 56224567 (+)
G1391251 adcy6 non-coding downstream 56311 56245434 ~ 56245671 (+)
G1391252 NA non-coding downstream 56618 56245741 ~ 56246017 (+)
G1391253 NA non-coding downstream 56960 56246083 ~ 56246354 (+)
G1391254 NA non-coding downstream 57857 56246515 ~ 56247620 (+)
G1390616 LOC106566696 other upstream 268066 55793024 ~ 55823192 (+)
G1390527 NA other upstream 450959 55640022 ~ 55640299 (+)
G1390508 NA other upstream 458420 55628694 ~ 55632838 (+)
G1390473 NA other upstream 561610 55528593 ~ 55529648 (+)
G1390386 LOC106566684 other upstream 709898 55364468 ~ 55381360 (+)
LOC118939462 LOC106566730 other downstream 590938 56779988 ~ 56790929 (+)
G1392601 NA other downstream 1176828 57365951 ~ 57366517 (+)
G1392616 NA other downstream 1207817 57396940 ~ 57397177 (+)
G1392617 NA other downstream 1212362 57401485 ~ 57402530 (+)

Expression


Co-expression Network