LOC110492370 (LOC106566713)


Basic Information

Item Value
gene id LOC110492370
gene name LOC106566713
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56189995 ~ 56206301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566626.2
AACCCCGCTGTGCACTGCCTTTACATACAAAGTAGCCCTGTGAATATCCAGTACACACTGCAGCCCGGTTTGTAACAGTGTGCCATTTTTGTCAGTCGACAAGGGTCTTTTCAATGTCAACTCCCAAGAAAGTCTGCATTATTGGCTCTGGCAATTGGGGTTCTGCTATTGCCAAAATAGTGGGTTCCAATGCTGCGCAGAACTCCAAGTTTGACAACACCGTGACCATGTGGGTGTTTGAAGAGATGGTGGATGGTCGCAAGCTGACAGACATCATTAACACCGACCATGAGAATGTCAAGTACCTGCCTGGACACAAGCTACCCCCCAATGTGttgGCTGTTGCTGAGTTGGTGGACGCTGCCAAGGAAGCAGACATCCTAGTGTTTGTGATCCCCCACCAGTTCATCGGCAGAGTGTGTGACACCATGAAGGGGAAGATAAAGAGCGATGCACTAGGAATGTCACTCATCAAGGGTGTGGATGAAGGTCCTGATGGGCTGAAGCTCATCTCTGATGTGATCCAGGAGAAGCTGAGCATCACCATGAGTGTGCTGATGGGGGCCAACATCGCCAACGAGGTCGCCGATGAGAAGTTCTGTGAGACCACTATCGgatGTAAGAATACAGAACATGGGGCTTTGCTGAAGGAACTCATGCAGACCAGTAACTTCCGGGTCACGGTAGTGGAGGAGTCCGATGTGGTTGAAATCTGTGGAGCACTGAAGAACATTGTGGCGGTGGGGGCGGGCTTCTGTGACGGCCTGGGCTTCGGTGACAACACCAAGGCGGCGGTGATCCGGCTGGGCCTGATGGAGATGATTGCCTTCGCACGAATCTTCTGCACTGCCGGGCCCGTCTCCTCTGCCACCTTCCTGGAGAGCTGCGGCGTTGCCGACCTCATCACAACCTGCTACGGAGGCCGCAACCGCAAAGTGGCAGAAGCCTTCGCTAAAGGGGGGAAGTCAATTGAAGAGCTGGAGAAAGAGATGCTGAATGGACAGAAGCTCCAGGGACCAGCAACAGCATCTGAAGTCCATGTCATCCTAAAGAACAAAAATCTGCTTGACAAGTTCCCACTATTCAACGCTGTGTACCAGATCTGCTACCAGGGCCATCCAGTCACAGAGTTCATCAAGTGTTTGCAGAACCACCCAGAGCACATGTAGGCTAACAGACGGACCAAGTGCCAGGAGAAGGATTAACACCACTTCCGCTTTGTACCGGTTAGGAAAATATGTACACTTGCACACTCCACAGCTCCGATGCAGCAAGCAGACTCCATCAGACGACGTGAAGTAGTCTACTCTGTACTGCCTAAGGGGTTTTTGTATGTACCTCTATAAAACAAGTGCTTTCCTCTTCCTGGTTTTCTACAAGAGTGTGACCCAGCCTTTTGTCACCCAATCAGACGCCACTGTCCATCCTCAGATGTTATCTTGGTCTGTCCATTGTGACCTCACTTCGTTATTGTTTGGCTTATTCATGTTAATAGGGGTAGGGAGTTGTAGCAGATGCTAGGCCATTTGTGTCCTCGCTTTTCTAATTCTGAATCTCTCTGCGATGACTTATACTTACTTTATGGATCATTAGGCTAGATTTGCTTAGCACctgttaaaaacaaatgaaagtgcCTTTCAATGCCACATTGCAAAAAATATTGGCGTTTTCTATGTGCTTTGTGAAACCAAATTGTTTTTCCCTTTTCCCTTAGTAACCATGACACTGCCGTTGAATTTCACTGACATGTGGCTTTACAGTATGTTTGAAAAGAGTGTAGGTTACCAAAAAAAAGATTTGCCTTTGAAATAAATCATTGATTTGTATCGTGGCTA

Function

NR:

description
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566626.2 True 1835 mRNA 0.48 8 56189995 56206301

Neighbor

gene id symbol gene type direction distance location
LOC110492366 LOC106566712 coding upstream 872 56091258 ~ 56189123 (+)
LOC110492364 LOC106566711 coding upstream 114594 56055330 ~ 56075401 (+)
LOC110492363 aaas coding upstream 181220 55998512 ~ 56008775 (+)
LOC110492361 LOC106566707 coding upstream 203161 55965514 ~ 55986834 (+)
LOC110492358 LOC106566704 coding upstream 243823 55920820 ~ 55946172 (+)
LOC118939557 NA coding downstream 31494 56237795 ~ 56239773 (+)
LOC110491117 NA coding downstream 104308 56310609 ~ 56322498 (+)
prim1 prim1 coding downstream 193749 56400050 ~ 56412393 (+)
LOC110492373 LOC100286403 coding downstream 217886 56424187 ~ 56437287 (+)
LOC118939611 NA coding downstream 229282 56435583 ~ 56435653 (+)
G1391165 NA non-coding upstream 101623 56088072 ~ 56088372 (+)
G1391161 NA non-coding upstream 121071 56068689 ~ 56068924 (+)
G1391160 NA non-coding upstream 122144 56067571 ~ 56067851 (+)
G1390938 LOC106566709 non-coding upstream 138108 56009187 ~ 56051887 (+)
G1390934 NA non-coding upstream 328375 55861366 ~ 55861620 (+)
G1391249 NA non-coding downstream 17974 56224275 ~ 56224567 (+)
G1391251 adcy6 non-coding downstream 39133 56245434 ~ 56245671 (+)
G1391252 NA non-coding downstream 39440 56245741 ~ 56246017 (+)
G1391253 NA non-coding downstream 39782 56246083 ~ 56246354 (+)
G1391254 NA non-coding downstream 40679 56246515 ~ 56247620 (+)
G1390616 LOC106566696 other upstream 366803 55793024 ~ 55823192 (+)
G1390527 NA other upstream 549696 55640022 ~ 55640299 (+)
G1390508 NA other upstream 557157 55628694 ~ 55632838 (+)
G1390473 NA other upstream 660347 55528593 ~ 55529648 (+)
G1390386 LOC106566684 other upstream 808635 55364468 ~ 55381360 (+)
LOC118939462 LOC106566730 other downstream 573760 56779988 ~ 56790929 (+)
G1392601 NA other downstream 1159650 57365951 ~ 57366517 (+)
G1392616 NA other downstream 1190639 57396940 ~ 57397177 (+)
G1392617 NA other downstream 1195184 57401485 ~ 57402530 (+)

Expression


Co-expression Network