LOC110492367 (LOC106566716)


Basic Information

Item Value
gene id LOC110492367
gene name LOC106566716
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56231265 ~ 56236905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566622.2
AGCCCATGTTACCCGTTGTTGTTATCAGTGTAATGGCACGCACCTGCTGCGCTCAATGCCATGTGGCGTCAGTATAGATAACTACGTCGCAGTTTTGAATAATTTTACAAAGAAGAGATAAAAGACAAGAAAAAGTGGCTAGATTCTTGAAATTTGGGCTTGAAGTAGGCTACATCTGGGTGGTCTGGTTTTCAGCTAAAAAGCCCTGCGGTCTTTCTCTGGTACGCCGGCACAATGCGTGCGTTCTCCCGCCGTCACACCCTTCCCTTTAAGCTTGCCGTTCTAGCAGGCTGCCTCTTCCTGGTCCTACTGCTCGTCATGCAGTATGACGTGGGAGGTGGGACTTCCCCTGAACCCTGGCTCCGAGAGCTGTCGAACAAACAGTCACAGGTGATGGGTGTGGTCAGAGGTGCTGTGTCAAACATGGGCTTCCAGATTGGTGCCCCCCTGCCCCTTCCCTCAGAGCGTGGGACCAACTCCGTTGATCCCCGCTGTCCACCTGGGTTCTATAGCATAGATGAGCTTCAACCTCACCTGGAGAGGCCCCTACAGGACCCAGAGGACCCCGGAGCCTATGGCCGACCGTTTGTGATGGGCAGGATGACCCCTGCAGAGATTAAAGAGAAGCAGGATGGGCTGACCAAAAATTGTTTCAACCAATTTGCCAGCGACCGTATCTCCCTTCACCGCAGCCTGGGAAATGACACGCGCCACCCAGATTGTGCAGGTCAAAGGTTCCGGCGctgccctcctctccccaccaccaGTGTGATCATCGTGTTCCACAATGAGGCGTGGTCCACCCTCCTGCGGACCGTTTACAGCGTCCTGCACACTGCTCCTGCCTCCCTGCTTACAGAGATATTACTGGTGGATGACGCTAGCACAGACGATCACCTGAAGTCTCGTCTGGATGAGTATGTCCTGCAGCTGAAGATTGTGCGTGTGCTACGACAGCGGGAGAGGAAGGGATTAATCACTGCCAGGCTACTGGGGGCACAGACTGCTCAAGGAGAGATCCTCACCTTCCTGGATGCCCACTGTGAGTGCTTCAATGGCTGGCTGGAACCCCTCCTGGCTCGGATAGTGGAGAAGCCCACTGCTGTGGTCAGCCCTGAGATAGTCATCATTGACCAAAACAACATGAAGTTCGCCAAACCCATCGCCACAGCTCGTGCCCGTAACCGTGGAAACTTTGACTGGAGCCTTATCTTTGGGTGGGAGCAGATCCCTGAGGAAGACCAAAAGAAACGCAAGAATGAAACTTATCCTGTCAGGACTCCTACCTTTGCAGGTGGTCTGTTCTCTATTTCTAAGACTTACTTTGAGCACATTGGGACCTATGACGACAAGATGTTGATCTGGGGAGGTGAGAATGTGGAGATGTCCTTCAGGGTGTGGCAATGTGGAGGCCAGCTGGAGATCATACCCTGCTCAGTGGTGGGACATGTATTCCGCAGTAAGAGCCCTCACACCTTCCCCAAAGGCAGGTCGGTGATTGCCCGCAACCAGGTGCGTCTAGCCGAGGTCTGGATGGAGGACTACAAGCAGATCTTCTACCGCAGGAACAAGAAGGCTGCCACCATAGCCAAAGAGAACACATATGGTGACATCTCTGAACGCCTCGAACTCAAAGAGAAGCTAAGCTGCAAAAACTTTACATGGTACTTGCACAACGTTTACCCAGAGGCCTATGTTCCAGACCTCACCCCTGTCATGTTTGGAGCGCTCAAGAACTCTGGCTCAAAGACATGCCTGGATGTGGGAGAAAAGAATAAGGGTGGGAAACCGGTTATCTTATACACATGCCACAACATGGGAGGAAACCAGTATTTTGAGTACACATCCCACCAGGAGCTTCGTCACAACATAGGTAAGCAGCTGTGTCTACATGCGACCCCCGGGGCGGCGCCGGTGTCCATAAAGCTCTGCCGCCTGAAGGGCAAAGGAACCACAGTGGCCCCGGCGCAAGTGTGGCATTTTACACCGGGTTCTCTCCTTAAGAATCCCTCCTCGGGCAAATGCTTGACTGTAGACGGAGGGGAAGTGGTGATGAGTAGCTGTGACTTGGCCAATCTCAGCCAACACTGGGACCTCAGCTGACCAATGGGATCCAGGGAGGAAGGAGGATCACTGACATCATCCATTACATTTGGGAGCCCTGCCCTTTTTGATGACAACACATGTATTTCTGAAATATGGGACCCTGTGCAGTTTGACCCAGtactttatttctttatttactaAAGAAGTTGAAAAGTT

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566622.2 True 2262 mRNA 0.52 11 56231265 56236905

Neighbor

gene id symbol gene type direction distance location
LOC110492369 g6pd coding downstream 9687 56206812 ~ 56221578 (-)
LOC110492365 spry4 coding downstream 153028 56076203 ~ 56078237 (-)
LOC110491116 LOC106566709 coding downstream 194478 56009188 ~ 56036787 (-)
LOC110492360 LOC106566706 coding downstream 233191 55986204 ~ 55998076 (-)
LOC110492359 LOC106566705 coding downstream 265792 55955040 ~ 55965473 (-)
LOC110492371 adcy6 coding upstream 3858 56240763 ~ 56293503 (-)
LOC110491118 LOC106571944 coding upstream 85786 56322691 ~ 56338540 (-)
LOC110491119 LOC106566720 coding upstream 115562 56352467 ~ 56359968 (-)
LOC110492378 LOC106566727 coding upstream 306737 56543642 ~ 56563898 (-)
LOC110492379 LOC106566728 coding upstream 333220 56570125 ~ 56679900 (-)
G1391623 NA non-coding downstream 943 56229995 ~ 56230322 (-)
G1391621 NA non-coding downstream 7412 56223535 ~ 56223853 (-)
G1391597 NA non-coding downstream 144944 56086105 ~ 56086321 (-)
G1391127 NA non-coding downstream 222512 56006674 ~ 56008753 (-)
G1391102 NA non-coding downstream 229634 55943176 ~ 56001631 (-)
G1391693 NA non-coding upstream 3411 56240316 ~ 56240670 (-)
G1391746 NA non-coding upstream 96250 56333155 ~ 56333474 (-)
G1391755 NA non-coding upstream 112635 56349540 ~ 56349764 (-)
G1391721 NA non-coding upstream 114082 56350987 ~ 56351987 (-)
G1391624 NA other downstream 5204 56225414 ~ 56226061 (-)
G1391586 NA other downstream 166403 56064503 ~ 56064862 (-)
LOC110492352 nua4l other downstream 404634 55824155 ~ 55826646 (-)
G1390030 ifrd2 other downstream 1245002 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1686022 54544728 ~ 54545243 (-)
G1391796 LOC100286403 other upstream 187367 56424272 ~ 56437279 (-)
G1391869 NA other upstream 301687 56538592 ~ 56540929 (-)
LOC110492394 psma7 other upstream 1612769 57849674 ~ 57853907 (-)
LOC110492397 NA other upstream 1650586 57887491 ~ 57893319 (-)

Expression


Co-expression Network