LOC118939557


Basic Information

Item Value
gene id LOC118939557
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56237795 ~ 56239773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947349.1
GATGTCTGGAACGCCATCTGATTGGTGGCGCTTGTTACCATGGTCCTGCGTAAAACAGAAGTTGTGATTTATTTACAGAGGCAATTGCTTGCCTTTCCCACATTTTCCTGCTATCCTAAACAGCTTCAGCCTGTTGCTGGCGACGGTAACGTTACTTTATGGCTTTCTTCGGGATAACGAATTTGGGCTATCAAAACCCCATCGGAGACAATATGTTATTGGGTCCGAGATCGTCTGCTTCTCCCGGTGATGAGGTGGATTCACGGAGCTGGGCTAAACAGTCAGGACTGCCCTCCATCCAAGTCCAGAGGGGAACCCCAAAATGCACTGATACCGGCAGTATCTACAACCAGCCTTCTCCCTTCAGCCCAGACATACACCAAGGGAGCCAGGGGCGATACAGAGAGATGCTCAAACGGGTTCAGATACCAAGATCCCCGAATCAGCTGTACTCCGTGCCcctgacagacagccagcagTGTGGATGGTGGATGTCTAATGGAGGCCAAGGAAAGATGCATGAACCCTGGACCCAAGTCAGACGATTCCCCCGCAAGAACAGTGAGATGACCAAGTTTGTGAAAGAGATGTCAATGACGGACCGAGAGTTCAGCTTATTCTGATTTCCACTCCTGcagtaacatacacacacacaatcccatcCAAAGACCTCTGGGACCTTTACACTGTAAGGACTATTGTGGTTTAATAAACTGAGACATTTTCATCATa
>XR_005036557.1
TGGCGCTTGTTACCATGGTCCTGCGTAAAACAGAAGTTGTGATTTATTTACAGAGGCAATTGCTTGCCTTTCCCACATTTTCCTGCTATCCTAAACAGCTTCAGCCTGTTGCTGGCGACGGTAACGTTACTTTATGGCTTTCTTCGGGATAACGAATTTGGGCTATCAAAACCCCATCGGAGACAATATGTTATTGGGTCCGAGATCGTCTGCTTCTCCCGGTGATGAGGTGGATTCACGGAGCTGGGCTAAACAGTCAGGACTGCCCTCCATCCAAGTCCAGAGGGGAACCCCAAAATGCACTGATACCGGCAGTATCTACAACCAGCCTTCTCCCTTCAGCCCAGACATACACCAAGGGAGCCAGGGGCGATACAGAGAGATGCTCAAACGGGTTCAGATACCAAGATGTAAGTTAGATCCCCGAATCAGCTGTACTCCGTGCCcctgacagacagccagcagTGTGGATGGTGGATGTCTAATGGAGGCCAAGGAAAGATGCATGAACCCTGGACCCAAGTCAGACGATTCCCCCGCAAGAACAGTGAGATGACCAAGTTTGTGAAAGAGATGTCAATGACGGACCGAGAGTTCAGCTTATTCTGATTTCCACTCCTGcagtaacatacacacacacaatcccatcCAAAGACCTCTGGGACCTTTACACTGTAAGGACTATTGTGGTTTAATAAACTGAGACATTTTCATCATa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947349.1 False 732 mRNA 0.49 4 56237795 56239773
XR_005036557.1 True 718 mRNA 0.48 4 56237820 56239773

Neighbor

gene id symbol gene type direction distance location
LOC110492370 LOC106566713 coding upstream 31494 56189995 ~ 56206301 (+)
LOC110492366 LOC106566712 coding upstream 48672 56091258 ~ 56189123 (+)
LOC110492364 LOC106566711 coding upstream 162394 56055330 ~ 56075401 (+)
LOC110492363 aaas coding upstream 229020 55998512 ~ 56008775 (+)
LOC110492361 LOC106566707 coding upstream 250961 55965514 ~ 55986834 (+)
LOC110491117 NA coding downstream 70836 56310609 ~ 56322498 (+)
prim1 prim1 coding downstream 160277 56400050 ~ 56412393 (+)
LOC110492373 LOC100286403 coding downstream 184414 56424187 ~ 56437287 (+)
LOC118939611 NA coding downstream 195810 56435583 ~ 56435653 (+)
LOC118939608 NA coding downstream 196823 56436596 ~ 56436669 (+)
G1391249 NA non-coding upstream 13228 56224275 ~ 56224567 (+)
G1391165 NA non-coding upstream 149423 56088072 ~ 56088372 (+)
G1391161 NA non-coding upstream 168871 56068689 ~ 56068924 (+)
G1391160 NA non-coding upstream 169944 56067571 ~ 56067851 (+)
G1390938 LOC106566709 non-coding upstream 185908 56009187 ~ 56051887 (+)
G1391251 adcy6 non-coding downstream 5661 56245434 ~ 56245671 (+)
G1391252 NA non-coding downstream 5968 56245741 ~ 56246017 (+)
G1391253 NA non-coding downstream 6310 56246083 ~ 56246354 (+)
G1391254 NA non-coding downstream 7207 56246515 ~ 56247620 (+)
G1391255 NA non-coding downstream 8192 56247965 ~ 56248195 (+)
G1390616 LOC106566696 other upstream 414603 55793024 ~ 55823192 (+)
G1390527 NA other upstream 597496 55640022 ~ 55640299 (+)
G1390508 NA other upstream 604957 55628694 ~ 55632838 (+)
G1390473 NA other upstream 708147 55528593 ~ 55529648 (+)
G1390386 LOC106566684 other upstream 856435 55364468 ~ 55381360 (+)
LOC118939462 LOC106566730 other downstream 540288 56779988 ~ 56790929 (+)
G1392601 NA other downstream 1126178 57365951 ~ 57366517 (+)
G1392616 NA other downstream 1157167 57396940 ~ 57397177 (+)
G1392617 NA other downstream 1161712 57401485 ~ 57402530 (+)

Expression


Co-expression Network