LOC110491118 (LOC106571944)


Basic Information

Item Value
gene id LOC110491118
gene name LOC106571944
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56322691 ~ 56338540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110491118
ATGGACTTGAGGACCTACAACTCAGAACTCCTTCTTTCCTCTCAGATGGCTGGTGAATCGACCGACAAGAAGAACCATGCAGCAGAGACCTCAGGAGTCAAGGATAAGGAGCGGAAATGCAAAGGCTCCCCATCCATGGACCGGAAACCACGCCAACGCTCTCGTGAACGCAACCGATCCAAATCAGCAGAAAGAGATCGCCGTCTGAAGGACAAGGAGAGCGAGAAGGAGCATGACCGggacaaggacagagagaggggtcgCAAGGACATTCACCGCAGAGACAAAAACCACAGTAAGAAATCCAGAAGCGTCTCCCCCAAGTCCAAGGACAGGATAAAGAGGGAGAAGGATTTGAAAAAAGAGGAAGATGATGAGAAAAAGAAGAAAGGAAAGGTACAGCCACTCTCTCTAGAAGAGCTTCTAGCTTCTAagcCCAAGTTCCTGTCCAAGGCAGAGCGTGAGGCGGAGGCTCTGAAAAGGAGGCAGCAGCAGACTGAGGAGAGGAAGAACACTATCGATGAGGACAGGAAAAAGAGGAGGATTTTCCAGGACATCGGGAGGAAGATGATGGGTTTGTCTGTCCGTTTCCCGGAGGACCCCCAGAAAAGGGACAGATGAgaacggagagagaggatggagcgTGAGAACAACGGGGATCAAGCGGACGACGGAAGACAGAAGatcagagagaggaaagataagGGCAAGGAGCTCCAGGCCATCAAGTGGGGATTCTCTGATTTAGTTAAATCACAAGCTTTGATATGGAGCGGGACTAAGAAGCGCTGGCGGACACGCCACCTGAACGACAGAAAGTTTGTCTTTGAGGGGGACGCCTCTGAAGACACTTCTACCGACTACAACCCCATtTATAAGGAGAAGCACCAGGTCCAGCTGTATGGGCGCGGCTTCATAGCTGGTATTGACCTGAAGCAGCAGAAGAGAGATCCGTCACATTTCTACGTGAACATGATGGAGACGAGACGCACActggaggaacaggaggaGGTGCGGCTGAAGAAGGTGTGGAAGAAGGAGGCCAAGCAGTGGTGGGATGACAGACACTGGTCCCAGAAGAAGCTTGAGGAGATGGCGGACAGGGACGGGCGTATCTTCAGGGAGGATTACAGTATCCCCACAAAGGGTGGCAAGATCCCCCACCCCATCAGGAACTGGAAGGAGTACAACCTGCCCCCACACATCGTGGAGGTCATTGACAACTGTGGCTACAAGGATCCAACGCCTATCCAGAGACAAGCTATATCCATTGGCCTACAGAACCGTGACATCATCGGCGTGGCTGAGACTGGTAGCGGTAAAACAGCTGCTTTCCTCATCCCTCTATTGGTCTGGATCACTACCCTGCCCAAGGATGAAAGGATGGAGGACTCGGACCAGGGTCCGTATGCAGTGATCCTGGCCCCCACCCGTGAGCTGGCCCAGCAGATCGAGGAGGAGACCCTTAAGTTTGGTAAACCTCTGGGGATCTGCACCGTGGCCGTCATCGGAGGTATCTCCAGGGAGGACCAGGGCTTCCGCCTCCGGATGGGCTGCGAGATAGTGATAGCCACCCCGGGTCATCTGATAGACGTAGTGGAGAACAGATACCTGGTCCTGGGCCACTGTACCTACGTGGTACTGGACAAGGCTGACCCCATGATAGACATAGGCTTCAAGCCTGACGTCCAGAATATCCTGGAGTACATCCCTGTGACCAATCAGAAACTAGACACGGACGAGGCAGAGGACCCAGAGAAAATGAAGATGAACTTCGAGATGGGAAAACACAAGTACAGACAGctcttcctcctcctcgtcctccttgCCCTCCCAGAGACGTGGGCCCCCCTTAGGCCGTGGGACAGGGAGTCACTCCCGTCTTCAGACAGCATCAGGCTGTCCTGCTCCAGGGGGGTGTGGGCCTcctcccttatctcctcctcctcacttagAGGTGGCAGGTGGataagagatgagatgagagtcaacatactgtag

Function

NR:

description
probable ATP-dependent RNA helicase DDX23

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110491118 True 2001 mRNA 0.54 14 56322691 56338540

Neighbor

gene id symbol gene type direction distance location
LOC110492371 adcy6 coding downstream 29188 56240763 ~ 56293503 (-)
LOC110492367 LOC106566716 coding downstream 85786 56231265 ~ 56236905 (-)
LOC110492369 g6pd coding downstream 101113 56206812 ~ 56221578 (-)
LOC110492365 spry4 coding downstream 244454 56076203 ~ 56078237 (-)
LOC110491116 LOC106566709 coding downstream 285904 56009188 ~ 56036787 (-)
LOC110491119 LOC106566720 coding upstream 13927 56352467 ~ 56359968 (-)
LOC110492378 LOC106566727 coding upstream 205102 56543642 ~ 56563898 (-)
LOC110492379 LOC106566728 coding upstream 231585 56570125 ~ 56679900 (-)
LOC110492380 LOC106566729 coding upstream 375242 56713782 ~ 56729174 (-)
col9a3 LOC106566732 coding upstream 492220 56830760 ~ 56854519 (-)
G1391693 NA non-coding downstream 82021 56240316 ~ 56240670 (-)
G1391623 NA non-coding downstream 92369 56229995 ~ 56230322 (-)
G1391621 NA non-coding downstream 98838 56223535 ~ 56223853 (-)
G1391597 NA non-coding downstream 236370 56086105 ~ 56086321 (-)
G1391755 NA non-coding upstream 11000 56349540 ~ 56349764 (-)
G1391721 NA non-coding upstream 12447 56350987 ~ 56351987 (-)
G1391796 LOC100286403 non-coding upstream 94591 56424272 ~ 56437279 (-)
G1391799 NA non-coding upstream 117604 56456144 ~ 56456559 (-)
G1391826 NA non-coding upstream 120601 56459141 ~ 56459352 (-)
G1391624 NA other downstream 96630 56225414 ~ 56226061 (-)
G1391586 NA other downstream 257829 56064503 ~ 56064862 (-)
LOC110492352 nua4l other downstream 496060 55824155 ~ 55826646 (-)
G1390030 ifrd2 other downstream 1336428 54984818 ~ 54986263 (-)
G1391869 NA other upstream 200052 56538592 ~ 56540929 (-)
LOC110492394 psma7 other upstream 1511134 57849674 ~ 57853907 (-)
LOC110492397 NA other upstream 1548951 57887491 ~ 57893319 (-)
G1393949 LOC105029132 other upstream 1866219 58204759 ~ 58207165 (-)

Expression


Co-expression Network