prim1 (prim1)


Basic Information

Item Value
gene id prim1
gene name prim1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56400050 ~ 56412393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566629.2
AGTAGGTGACGGCAATGAACCATAATTGTGGATGCCAACCGCCGATGAACCCcaccgaagaagaagaagaagaaggaaattCCGGTCAACTTTCAGAGTTTCGCGCGCGTTCGAATGTCAAACAAAGAACTGCGGGTACATTCAGCTATCAACATTTTCGATTAAATCAATACATTTGCATAACTTCAGAAATGACAACTGCTGATTACGACCAGGCTTCACTACCGGACTTATTGCCTCTGTACTACCGCCGACTTTTCCCTTTCTCTCAATACCACCGGTGGCTGAACTATGGAGGAGTGACAAAGAACTACTTCCAGAATCGAGAGTTCTCCTTCACGTTGAAGGATGACATCTACGTACGATATCAGTCGTTCAGCACACAGAACGAGCTGGAGAAGGAGATGCAGAAGATGAACCCGTACAAGATTGACATTGGAGCAGTCTACAGTCACAGGCCCAATCAGCACAACACAGTCAAGTCTGGATCCTTCCAGGCTCTGGAGAAGGAGCTGGTGTTTGATATTGATATGACAGACTATGATGACGTCAGAAGCTGTTGCAGTGGTGCAGACATCTGCCCAAAGTGCTGGACTCTGATGACCATTGCCATCCGTATATTGGACCGAGCCCTTCGAGATGACTTCGGTTTCCGGCACTGCCTGTGGGTGTACTCTGGCAGGAGAGGGGTGCATTGCTGGGTGTGTGACGAGGCCGCCCGGAAGCTCTCTGTGGTGGCACGCTCTGCTGTGGCTGAGTACTTGAGTCTGGTCAAGGGTGGAGATGAGACGGTGAGGAAAGTTGTGCTGTCAGACCCAATTCATCCATTCATCACGGAATCCCTGACTGTGGTGGAGCGCTACTTCTCCCAGTACGCTCTGCTGGGACAGGACATACTGGGTAGCAAAGAGGCTGTAGACAAAGTGCTGGCTCTTTTACCTGAAGATGTCAGAAAGAAGCTGCTGCAGTACTTCCAGACTGAAAAGAACCCTGAGATGCGCTGGGATACACTCAGAAGTATGGCCCAAGACAAACGCACGACTGCCAAGAAGGGCCACTACTTTGAGATGGAGATCATGCTTCAGTACTGTTACCCTCGGCTGGATGTTAACGTCAGTAAAGGAGTCAACCACTTGCTGAAGAGCCCCTTCAGCGTCCATCCCAAAACAGGGCGCATCTCTGTTCCCATTGACCTGAGAGAACTGGATCGCTTTGACCCCTTTGAAGTGCCCACTATCAGTCTGATCTGTGAGGAGCTGGATCAGCCCAAGActgaagaggagcaggaggacacCATGGAGAATGAGAATAAAAAAGAAGCAGGAGAGCGGCGGAAGAtgagagATTACAAACGAACAAGCTTGGCGAAGTATGTGAAACTGTTTGATAATTTCTTGGAGGGGATGGCTCACTCAAGGAAAGGGGAGGTTCTTAAAAACAGTGATCTTCAAAAGGACTTCTAACCCTGTGCGGTGTCCAACAATAGTTGTCTAATCTTAAACAAGCATGTCGTATTAGTTGTTAATCTGACATTTAAAAGATGAACACACATTACATATAAGCAAATGGTTTCAGTCTGAGAATTGTCATGCAAATATATTACTCTATGAATGATTGAAAATATCAGTTGTGCAAACTTTTATATGGCTTATTGTTTTCTCATTAAACTGACTTTGTCCTCCAGTTTGTCAACCTA

Function

symbol description
prim1 Predicted to enable DNA primase activity. Predicted to be involved in DNA replication, synthesis of RNA primer. Predicted to act upstream of or within DNA replication. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in several structures, including blastodisc; head; hematopoietic system; nervous system; and pectoral fin musculature. Orthologous to human PRIM1 (DNA primase subunit 1).

NR:

description
DNA primase small subunit

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0003896 DNA primase activity molecular_function

KEGG:

id description
K02684 PRI1; DNA primase small subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566629.2 True 1696 mRNA 0.47 13 56400050 56412393

Neighbor

gene id symbol gene type direction distance location
LOC110491117 NA coding upstream 77552 56310609 ~ 56322498 (+)
LOC118939557 NA coding upstream 160277 56237795 ~ 56239773 (+)
LOC110492370 LOC106566713 coding upstream 193749 56189995 ~ 56206301 (+)
LOC110492366 LOC106566712 coding upstream 210927 56091258 ~ 56189123 (+)
LOC110492364 LOC106566711 coding upstream 324649 56055330 ~ 56075401 (+)
LOC110492373 LOC100286403 coding downstream 11794 56424187 ~ 56437287 (+)
LOC118939611 NA coding downstream 23190 56435583 ~ 56435653 (+)
LOC118939608 NA coding downstream 24203 56436596 ~ 56436669 (+)
LOC118939609 NA coding downstream 24634 56437027 ~ 56437100 (+)
LOC110492374 ptges3 coding downstream 38522 56450915 ~ 56457720 (+)
G1391327 NA non-coding upstream 37989 56360627 ~ 56362061 (+)
G1391318 NA non-coding upstream 47618 56350996 ~ 56352432 (+)
G1391307 NA non-coding upstream 69974 56329859 ~ 56330076 (+)
G1391303 NA non-coding upstream 76390 56323445 ~ 56323660 (+)
G1391256 NA non-coding upstream 151392 56248365 ~ 56248658 (+)
G1391370 NA non-coding downstream 11028 56423421 ~ 56423733 (+)
G1391363 NA non-coding downstream 45510 56457903 ~ 56459321 (+)
G1391364 NA non-coding downstream 52704 56465097 ~ 56465424 (+)
G1391358 NA non-coding downstream 59902 56472295 ~ 56473635 (+)
G1391382 NA non-coding downstream 79114 56491507 ~ 56491947 (+)
G1391254 NA other upstream 153177 56246515 ~ 56247620 (+)
G1390616 LOC106566696 other upstream 576858 55793024 ~ 55823192 (+)
G1390527 NA other upstream 759751 55640022 ~ 55640299 (+)
G1390508 NA other upstream 767212 55628694 ~ 55632838 (+)
G1390473 NA other upstream 870402 55528593 ~ 55529648 (+)
LOC118939462 LOC106566730 other downstream 367668 56779988 ~ 56790929 (+)
G1392601 NA other downstream 953558 57365951 ~ 57366517 (+)
G1392616 NA other downstream 984547 57396940 ~ 57397177 (+)
G1392617 NA other downstream 989092 57401485 ~ 57402530 (+)
G1393570 LOC106566761 other downstream 2006993 58419386 ~ 58423502 (+)

Expression


Co-expression Network