LOC110492378 (LOC106566727)


Basic Information

Item Value
gene id LOC110492378
gene name LOC106566727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56543642 ~ 56563898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566639.2
TATTCCGAAGGAGTAGGCAAGGCACCTGTCAAGAAGAGACTTAAATCCAGCCTGTTACAACAATAGCGCTGCTGGGATATAACTCAACGCATGGAATAAGGACGTCATTTTGCTTCGATACAGACTGGACGAATCAAGCCTGATTTTGGGCGCTTGAGAAAAACCAATGCGCATTTAAAGCTTCCATCTCTCGAACGGCCATTTAGTTGTTTAGAACTTTGATATACCACCTATTGTGTTTCCCCCATTGACCGTTTAGGTTTTCCACTCGAACTCACTAGTGGACCAACGCTTTATCATCCATTTGTTAACAGAGGTCTGGAGACAATGCATCCCACTATTCAGAAAGACACTACTTTCACTAAGATATTTGTCGGCGGTTTACCTTATCATACAAACGACGCATCCCTTCGAAAATACTTCGAGATGTTCGGGGATATTGACGAGGCCGTTGTGATAACGGACAGACAAACCGGGAAATCCCGAGGATACGGATTTGTGACTATGATGGACAGGGGGTCGACAGAACGGGCATGTAAAGACCCCAACCCCATTGTCGACGGGAGGAAGGCTAACGTCAACCTGGCCTACCTGGGAGCCAAGCCCCGCAGCCCACAGACAGGTTTCTCCATCAGAGTGCAGCAGGTCCACCCCGCCCTGATCCAGAGGCAGTATGGATTGGCCCAGCAGTGTATGTACCCCCAGGCCTTCCTCCAGCCCAGTCTGGTGCTCCAGTCCCACCTCAGCCCCTCTCAGGCCTCACTCACTTCTCCATAtatggactacagctcagcctatGTCCCctacacctccaccacctccactggCCTGGAGCACTACCCCTACACTCCATCCCCCACGCTCTCCGCCAGCTACCTCAGCTACCCCTACACCCCCTCCCCCTCGCCCTCCGCAAGCTACCTCAGCTACCGCTACTCCCCCGCAACACAAGGTCCCACCATTTCCGCCCCCATTACCCCGCCCGTCCACCCCTCCCTCAACCCCTTTGCTGGCCTCTCTATCCCCCCCGCTGCCTACCTCCAATACCCCCTCCACCAGCCTGACCACATGCTGTGATGGCGGAGAGGGAGGTGTGGTGATGTGGGGTGAGGATGATCAAAGGGGGGCACTGATGACAATGTGAATGGAGACTTGGAACAGGAGGATTATTGCGCTATGACCTGCGACATCATCAGTATGAGACTCCCGACAGCCGATGAGAGAGTGGGTTCTGAATCCAAAGGGCTTTGTCAAAACAAAACACACTGGGACGTCTTCCTGTTTTTCTATTAGGGTTATTATCCATTGTTGTCGTAGTTGTTACTATGCTACTATTGCTGTTGTCACCAATGTTTATACGAATGTTTTTAGCTAATGATGGAAGTAAGAGCTATCCCTGTGTCCAATGCCAAACATGATGGAGTCAATGGAACATGAGAACTGAAAGAGGGGAATGAATGATTCTGGATCAACCTAGATCCTTGCACTCCTCCTTACCCATACAGAACACCCACCTCGTACACCAAGCCAAGGCTAGCCCTTCAATGTAGTGGATGGGGCTTGAAGGTTGGGCGAGGATGGGTTGGGTAGCCATTATATTTAACTAGATGCTCCGCCTCTCTCTTCTGGAAGTTGTACTGAACGTTTCACTAGcgaggtgagagagaggcagcatCCTCTTCTGGACATTTCTCCAGGAATACCTTTCTCTACGTGGCCTTATagcctctctctgtttccatgtCCTCCATGAGTGCAAGTAAGTTATTGCAGATTGAGAATCACACTTTCACTGAATATGCAATTATTATTCTGATGGAGTATGGGATGAATATTTATAAGGTAGGCAACATTGTAACATGCTTTTTATATCAATGTTACTCTAACATAATCATGTCAAGGCAGATTTTTGTAAAGAATGTATTTCCATATACATGTTTATCCTCAGAGACCTGCAGCAGCTGGGGTAACTGACTATCTCAGTATTGTTTAAAGTGAGCAGAGGCAAAAACTACAGGCTAATGGAGGATGTATGATCTGGTTGTGGAATAATAATGTAATGTTTTAATGATACAAGTGTTGTCCATCAGGTGAGTTGATGTCTGCTAAAACCTGACTGATGCTATGGGCTAGACTCATGtatgtgtacagtcgtggccaaaagtttgtagaatgacacaaatataaattttcacaaagtc

Function

NR:

description
RNA-binding protein 38-like

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566639.2 True 2201 mRNA 0.48 4 56543642 56563898

Neighbor

gene id symbol gene type direction distance location
LOC110491119 LOC106566720 coding downstream 183674 56352467 ~ 56359968 (-)
LOC110491118 LOC106571944 coding downstream 205102 56322691 ~ 56338540 (-)
LOC110492371 adcy6 coding downstream 250139 56240763 ~ 56293503 (-)
LOC110492367 LOC106566716 coding downstream 306737 56231265 ~ 56236905 (-)
LOC110492369 g6pd coding downstream 322064 56206812 ~ 56221578 (-)
LOC110492379 LOC106566728 coding upstream 6227 56570125 ~ 56679900 (-)
LOC110492380 LOC106566729 coding upstream 149884 56713782 ~ 56729174 (-)
col9a3 LOC106566732 coding upstream 266862 56830760 ~ 56854519 (-)
LOC110491121 ogfr coding upstream 293173 56857071 ~ 56875920 (-)
LOC118939559 NA coding upstream 312400 56876298 ~ 56877789 (-)
G1391839 baz2a non-coding downstream 54405 56488672 ~ 56489237 (-)
G1391802 NA non-coding downstream 70026 56471731 ~ 56473616 (-)
G1391826 NA non-coding downstream 84290 56459141 ~ 56459352 (-)
G1391799 NA non-coding downstream 87083 56456144 ~ 56456559 (-)
G1391796 LOC100286403 non-coding downstream 106363 56424272 ~ 56437279 (-)
G1391942 NA non-coding upstream 137367 56701265 ~ 56701492 (-)
G1391930 NA non-coding upstream 145534 56709432 ~ 56712162 (-)
G1391980 NA non-coding upstream 205009 56768907 ~ 56769150 (-)
G1391983 NA non-coding upstream 209771 56773669 ~ 56773876 (-)
G1391985 NA non-coding upstream 210586 56774484 ~ 56774800 (-)
G1391869 NA other downstream 2713 56538592 ~ 56540929 (-)
G1391624 NA other downstream 317581 56225414 ~ 56226061 (-)
G1391586 NA other downstream 478780 56064503 ~ 56064862 (-)
LOC110492394 psma7 other upstream 1285776 57849674 ~ 57853907 (-)
LOC110492397 NA other upstream 1323593 57887491 ~ 57893319 (-)
G1393949 LOC105029132 other upstream 1640861 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 1710130 58274028 ~ 58278427 (-)
LOC110492410 LOC106566756 other upstream 1738613 58302511 ~ 58315644 (-)

Expression


Co-expression Network