Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110492382 |
| gene name | LOC100195767 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 56729499 ~ 56762482 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protein kinase C-binding protein 1-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021566645.2 | False | 5291 | mRNA | 0.51 | 21 | 56729499 | 56762482 |
| XM_021566650.2 | False | 5213 | mRNA | 0.51 | 21 | 56729499 | 56762482 |
| XM_021566647.2 | False | 5390 | mRNA | 0.51 | 22 | 56729509 | 56762482 |
| XM_036947360.1 | False | 5581 | mRNA | 0.50 | 21 | 56729509 | 56762482 |
| XM_036947361.1 | False | 5569 | mRNA | 0.50 | 21 | 56729509 | 56762482 |
| XM_036947362.1 | False | 5503 | mRNA | 0.50 | 21 | 56729509 | 56762482 |
| XM_036947365.1 | False | 5534 | mRNA | 0.50 | 21 | 56729509 | 56762482 |
| XM_036947363.1 | False | 5490 | mRNA | 0.50 | 21 | 56729510 | 56762482 |
| XM_021566649.2 | False | 5120 | mRNA | 0.50 | 20 | 56735800 | 56762482 |
| XM_021566652.2 | False | 5042 | mRNA | 0.51 | 20 | 56735800 | 56762482 |
| XM_036947366.1 | False | 5073 | mRNA | 0.51 | 20 | 56735800 | 56762482 |
| XR_005036558.1 | False | 1244 | mRNA | 0.52 | 7 | 56736364 | 56748695 |
| XM_036947359.1 | False | 4876 | mRNA | 0.51 | 20 | 56736848 | 56762482 |
| XM_036947367.1 | False | 4907 | mRNA | 0.51 | 20 | 56736848 | 56762482 |
| XM_036947364.1 | True | 4713 | mRNA | 0.50 | 18 | 56739928 | 56762482 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492377 | LOC106566726 | coding | upstream | 189367 | 56536667 ~ 56540132 (+) |
| LOC118939476 | NA | coding | upstream | 203438 | 56524919 ~ 56526061 (+) |
| LOC110492375 | baz2a | coding | upstream | 221504 | 56474410 ~ 56507995 (+) |
| LOC110492376 | baz2a | coding | upstream | 257549 | 56462505 ~ 56471950 (+) |
| LOC110492374 | ptges3 | coding | upstream | 271779 | 56450915 ~ 56457720 (+) |
| LOC118939558 | NA | coding | downstream | 5164 | 56767646 ~ 56775078 (+) |
| LOC118939462 | LOC106566730 | coding | downstream | 17506 | 56779988 ~ 56790929 (+) |
| si:ch73-181d5.4 | LOC106566730 | coding | downstream | 28301 | 56790783 ~ 56820445 (+) |
| LOC110492385 | LOC106566733 | coding | downstream | 63305 | 56825787 ~ 56830593 (+) |
| LOC110492387 | LOC106566767 | coding | downstream | 142461 | 56904943 ~ 56907957 (+) |
| G1391540 | NA | non-coding | upstream | 20830 | 56708377 ~ 56708669 (+) |
| G1391536 | NA | non-coding | upstream | 27597 | 56701567 ~ 56701902 (+) |
| G1391532 | NA | non-coding | upstream | 31768 | 56697504 ~ 56697731 (+) |
| G1391530 | NA | non-coding | upstream | 35305 | 56693974 ~ 56694194 (+) |
| G1391515 | NA | non-coding | upstream | 53666 | 56675527 ~ 56675833 (+) |
| G1391562 | NA | non-coding | downstream | 11473 | 56773955 ~ 56774163 (+) |
| G1391564 | NA | non-coding | downstream | 13045 | 56775527 ~ 56776051 (+) |
| G1391569 | NA | non-coding | downstream | 58755 | 56821237 ~ 56821546 (+) |
| G1391577 | NA | non-coding | downstream | 90276 | 56852758 ~ 56854464 (+) |
| G1391254 | NA | other | upstream | 482626 | 56246515 ~ 56247620 (+) |
| G1390616 | LOC106566696 | other | upstream | 906307 | 55793024 ~ 55823192 (+) |
| G1390527 | NA | other | upstream | 1089200 | 55640022 ~ 55640299 (+) |
| G1390508 | NA | other | upstream | 1096661 | 55628694 ~ 55632838 (+) |
| G1390473 | NA | other | upstream | 1199851 | 55528593 ~ 55529648 (+) |
| G1392601 | NA | other | downstream | 603469 | 57365951 ~ 57366517 (+) |
| G1392616 | NA | other | downstream | 634458 | 57396940 ~ 57397177 (+) |
| G1392617 | NA | other | downstream | 639003 | 57401485 ~ 57402530 (+) |
| G1393570 | LOC106566761 | other | downstream | 1656904 | 58419386 ~ 58423502 (+) |
