col9a3 (LOC106566732)


Basic Information

Item Value
gene id col9a3
gene name LOC106566732
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56830760 ~ 56854519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566654.2
TGCGCTTTTTCTGGCTCAGAAATCGTGCCCCTCTACCCCGCTCTTCCCTCCATCAATCGTCCCcacccctccctcatccctctctacaGTACGACTGAGCTCAGCCCCTTCGGCTGGAGGCTCGGGTTTATCTGGAATCAACGTCAAAGCCATTCAGGAGCCGCGCGCTGTAAAGTGAAGGAGCGGTCTGTCACGAAACCTGGGGGAGAGCGAGCGATAAGGACTGGGAACGGAGCTTGACTTTTTCCGCGTAAACTCGGATTTGAGGGGCAAGCGGGGAGCCATGGCTATGTTTTCAGCTCTCGGGCTGCTCTTGCTGTGCCAGCTTTTGACATCATCCACAGCCCAGAGACCCGGCCCACGAGGAGCAGTCGGGCCGCCAGGACCCCCGGGACCCGATGGAAAGGATGGCACTGATGGCAAAGATGGCCCGGCTGGACTTTCAGGAAAAGCTGGACCCAAGGGGAAAGCAGGGGGAGCAGGAGGACCAGGGAACCCAGGCCTGCCTGGCCTCCCTGGGGTGGACGGATTGACAGGTGCTGATGGGCCTGCTGGGAAAGACGGTCCTCCGGGGGAGGTGGGCGACGCTGGACCTTCTGGGCCAGGTGGACCTCCTGGCAGAGGGAGACCAGGAGCTCCAGGGCCACCTGGAGCCAATGGGCTTGAGGGCGGAATCGGGCCACAGGGACCAGCGggcCCTGAGGGTCTTCCAGGATTATCCGGGCCTCCCGGCCCTGATGGACCACCAGGTCTTCCTGGGGCTCTCCCTGATGGCAGTGGAGATCTGTTGTGTCCTGCCATCTGTCCTCCTGGCCCCTCTGGCCCTCCAGGAATGCCTGGATTCAAGGGTCACACAGGGCACAAAGGAGATAAGGGAGAGCtcgggaaagatggagagaagGGTAATGCTGGCCCACCTGGTCCTCCAGGGATTCCTGGCACTGTCGGCCTGCAGGGTCCTCGTGGTTTGAGGGGACTTCAGGGCCCAATGGGGGCAGTAGGAGACAGGGGTTTACCAGGTTTCCGAGGCAAACCTGGTACTGCTGGCATCATCGGCAAGACAGGTGATGCTGGAGAGAAAGGACCAGAGGGATTTAGAGGGCCAAAGGGAGAGATTGGCAAAATTGGTCCAAAGGGAGTTTCTGGCGGAGCAGGACCCAAAGGGGAGCCCGGCATCCCAGGCAGAGACGGGAAAGATGGCACCCAAGGACTGGACGGTGAGAAGGGAGACGCTGGACGGAATGGGGTACCCGGTGAGAAAGGACCCAACGGCCTTCCTGGTTTACAAGGAAAGGCTGGCGCAAAGGGTGCCAAAGGAGGAGTTGGTGACccaggagagatgggagaggcagggcCATCTGGAGAGCCAGGTATTCCTGGCGACATTGGTATCCCAGGAGAGAGGGGCGAGGCGGGACCCAGAGGAGTGGCTGGGGGCGTCGGACCAGTGGGCAACATCGGGGTTCAGGGCAGCAAAGGCTTCCAGGGAATAAAGGGGGCTCTTGGTGACCCTGGCCTTCCCGGACCAACCGGGATTCGCGGCGGATTTGGTGAGAGGGGTCCAGTTGGAGCATCAGGCCCTAAAGGAGACATGGGCATGGCAGGAGCTGATGGTTTGCCCGGGGAGAATGGAGAACCTGGTCCATTTGGTCCAGTTGGCCAAAAAGGAGAGTCTGGGAAGCGTGGCGAGCTGGGACCTAAAGGTGTTGTGGGACCACAGGGAGAGCTCGGAGCCAGAGGGGTTCCTGGGAAACCAGGCCTAATGGGCTTCCAGGGTGAACAGGGTCTGCCTGGAATCGCTGGCAAGATTGGTGTTCCCGGTAAACTGGCAAGTGAACAGCACATTAGAGAATTGTGTGGATCTATGATTGATGATCAGATTGCACAGCTGGCTGCCAACCTCAGAAGGCCCCTGTCCCCTGGCCAAGTGGGTCGCCCCGGTGCTGCCGGACTTCCAGGAAAAGTAGGAGAGACTGGGTCTATCGGTCACCCCGGCTCCCGCGGACCTCCTGGCTACAGAGGACTGCCTGGAGACCTGGGAGACCCCGGTCCCAGAGGTGATCTTGGTGAACAGGGTGACAAGGGTCCCATTGGAAAGGCCATTGAAGGGCCCATTGGAGACCAAGGATACCAAGGTATCCCAGGAGTGCTTGGAATCGTCAAAGACGGGCGTGACGGATCCCCAGGAGATCCAGGTGAGCCTGGAGAGGCAGGTAGGACAGGAAGGACTGGGCACTCGGGCTCCCCAGGAATCTGTGACACTACCGCCTGCCAGGGGGCAAATGTCCATGGGAAAACCTCCAATCCCAAGAACCATTAAACATTACTTCCCCGGAACTAGCCCCCCCGGGAGGTgaaaaagaggaagagaaggagagaagacaaGTCACAGTTTCCTCTTGAATGTATTTAAAACAAGACGGGAACAGTAACAACAGATGTGAGATTTATTTTGAGAGGAAGAGGACATCCCAAAAGGAAAAGAGCAGTTTGGGAAAACAGAGaagaaacaaagacaaaaatCTAGAATCCATCCATCTATGAAGTGGACAAAGCTGATTAAACGTTTCACAAGAGCACTAGAGAACACATGCAATCATGTCAAATACCATTGAAAGTAAATTACaatttaacaaaaaaactgaaaaataacttTACTGGAAAAGTGCTTATAGGCCATTATTTTCAAAAACATTTGTGTAAAAATATGTACTTTAGTTGTTTCACCCCCTGTCTGGAAGATAACTCTCCAACACCAAAACTGTGATTGTCCTTGCAGTGAATGTGTCAAGGTCCTTTCTGCTTAGACCCGAGTGTTCCCTCACAGGACAAGCTTACAAAATGTAAAATAAGAAGATATGTGCCAGTGAGAAAAATGAAGTCTCTGCCATGGAGCTTTGGGTGTACTGTAACAGGCAATGAAGAAACCTATGTGCCCCGATTTTGTATATTGATGCAACCACGTTATTTTTCAACTCTTGCTAGACTAGTTTTTTTTATGTTGTCAAGTTTATTTGTTGCCCTTTTCCTTTTTTCACATTTCATGATTACATGTTTGATTTAAAAATCTCTTCCATTAagttttgaaaataaaaaaatgtggatGCATCAGAAATTGTAATTGTAGAATAACTCATTAACGATTTGTGCTTTTTTATTTTGCAATGACCACATCCACTTTGTACCGGTGCTGTAACTATTAAATATACATGACTTTAAATACTA

Function

NR:

description
collagen alpha-3(IX) chain-like

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566654.2 True 3225 mRNA 0.53 32 56830760 56854519

Neighbor

gene id symbol gene type direction distance location
LOC110492380 LOC106566729 coding downstream 101586 56713782 ~ 56729174 (-)
LOC110492379 LOC106566728 coding downstream 150860 56570125 ~ 56679900 (-)
LOC110492378 LOC106566727 coding downstream 266862 56543642 ~ 56563898 (-)
LOC110491119 LOC106566720 coding downstream 470792 56352467 ~ 56359968 (-)
LOC110491118 LOC106571944 coding downstream 492220 56322691 ~ 56338540 (-)
LOC110491121 ogfr coding upstream 2552 56857071 ~ 56875920 (-)
LOC118939559 NA coding upstream 21779 56876298 ~ 56877789 (-)
LOC110492388 LOC106566734 coding upstream 61140 56915659 ~ 56937661 (-)
LOC110492390 taf4 coding upstream 978930 57833449 ~ 57845200 (-)
LOC110492394 psma7 coding upstream 995885 57849674 ~ 57853907 (-)
G1392017 NA non-coding downstream 5182 56825302 ~ 56825578 (-)
G1391985 NA non-coding downstream 55960 56774484 ~ 56774800 (-)
G1391983 NA non-coding downstream 56884 56773669 ~ 56773876 (-)
G1391980 NA non-coding downstream 61610 56768907 ~ 56769150 (-)
G1391930 NA non-coding downstream 118598 56709432 ~ 56712162 (-)
G1392043 NA non-coding upstream 14479 56868998 ~ 56869342 (-)
G1392049 NA non-coding upstream 16579 56871098 ~ 56871301 (-)
G1392050 NA non-coding upstream 16938 56871457 ~ 56871660 (-)
G1392052 NA non-coding upstream 19485 56874004 ~ 56874233 (-)
G1392059 NA non-coding upstream 24550 56879069 ~ 56879276 (-)
G1391869 NA other downstream 289831 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 393481 56424272 ~ 56437279 (-)
LOC110492371 adcy6 other downstream 537288 56240763 ~ 56293503 (-)
G1391624 NA other downstream 604699 56225414 ~ 56226061 (-)
G1391586 NA other downstream 765898 56064503 ~ 56064862 (-)
LOC110492397 NA other upstream 1032972 57887491 ~ 57893319 (-)
G1393949 LOC105029132 other upstream 1350240 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 1419509 58274028 ~ 58278427 (-)
LOC110492410 LOC106566756 other upstream 1447992 58302511 ~ 58315644 (-)

Expression


Co-expression Network