LOC110492387 (LOC106566767)


Basic Information

Item Value
gene id LOC110492387
gene name LOC106566767
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56904943 ~ 56907957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566656.2
TGTTTTTATTCGGAGAGTCAGCACTCTGTCAATATTGagtgataagagagagagagcggccaTGTGGTCGCGCATTGACTTCGCTTTTTTACATTCCGTGGGCGCTTGGGGATTTACGTAATGTTTTATTATGTGGGCTTATAGGGTTGTGTTGGGACACTTGTTGAATGTGAGTAGGTTTGGATACTCCAATAGAAAACCAGGCGCAACAGTAACCTATGCATTTTGTAGAATAATAAAGTCAGACATTTTTTAATCTAGCCTATAGGCTCTCATATCACGCATGCACAAACTAGATGCAAACGCTGGAGGAACGTATCTTTTGGACAGAATGCGTTGGATCTCAATCATCTCGAGGACAATGATTCTCTCTCTACATTCTACAATATACATGGAAGATATGGTGATTGAACATTTTTAGAAACTGTACAGACTCAGTGCTGGAAATGTTTATTGAGGGAATAATCGAAATGTAAACGCACGTTTTTTTGGAAGGGGAAAAGAACCCAACGTTGCCTACATTTGAAACCTTCCATACACTTCCTATTTTATCTGTGTGCACCTCCTCCCCACGCTACACCTGCTGTTGGATTGATTCTACGCCACAGCCAGAGAGGCGAGAGCTAAACCACAGTGAGCACCACTCCCACCTGTAAGAGTTTCTCCGCCCTGGGGGCTTGAAGATGAAGAAGCAAAATGTGCGGACCCTGTCTCTTATCCTCTGCATGTTCTCCTACCTGCTGGTGGGCGCTGCGGTGTTCGACGCACTGGAATCCGAGACGGAGAGCTCCCGCCGACGCATCCTTGAGCTGAAGCGCACTGAGATGAAGAAGAAGTACCGCTTCTCCGAGGACGACTACCGGGAGATCGAGCGGGTGATGCTGCAAGCGGATCCCCACCGCGCCGGGAGACAGTGGAAATTCGCCGGGTCTTTTTACTTTGCCATCACGGTCATCACCACCATTGGCTATGGCCATGCAGCTCCAGGCACAGATTCAGGGAAGGTCTTTTGCATGTTCTATGCCGTGTTGGGCATCCCACTCACCCTGGTCATGTTCCAGAGCCTGGGCGAGAGGATGAACACGTTTGTCTGCTATCTCCTGCGCAGGGTCAAGCAGTGCCTAGGGTTACGAAGGACTGAGGTGTCCATGGAGAACATGGTCTTGGTGGGCTTCCTGTCCTGCATCGGCACCCTGTGTGTTGGGGCAGCAGCCTTCTCCCACTATGAGGCCTGGACCTTCTTCCAtgcctactactactgctttATCACGCTCACCACCATTGGGTTTGGGGACTTTGTGGCCCTGCAGAAGAAGGAGGACCTCCAGGAGAAGACACCCTATGTGGCCTTCAGCTTCATGTACATCCTGGTTGGACTGACAGTGATAGGAGCCTTCCTCAACCTGGTAGTGCTGCGCTTCCTCACCATGAACACAGAGGACGAGAAGAGGGACGCCCAGGAGAGGGCCTCCATCAAGAGGGAGAGGGGCCTGCTGACCATGGGGctccatggaggaggaggaggaccagggaaAGGCAGAGGAGTGCTTAGGgtcagggagagggacaggatggGGCAGAGCCGCAGTCACATCAATCTTTCCCTGCCCATGGAGGAGGGCACTAGCCGCACGAACCTCATCTCCTCCCCAGCAGAGGAGCAGGAGGATAGGGACAGGGCCAGGGGTGCCCCCTGCAGGCAGAGGCTGCATTTACAGCTGCATGGCACTGGCAGACGAAGGCCAGAGTCTCCCCTGGGCTCCTTGTGTTCCTGTATGTGCTACCGTCTGGAGGTGTGTGAGAGCCCCCTGCCTTCCCACAGGGAGCACCCTGGGTGCAACATTAACTCGGTCTACAGCAACTCCATCTCTTACAGGATCCAGAGCTGGAGCCCCAGAGACAACACAGGACTCTCGTCCCCAGGGAGCACACTCTCGCTTGGGCACTTCAGGGAGTACCCCTGCTGCCGGAGGAAGTCAGTGTAGCACCACATGGGACAGAATCTTTGTTTGTAACGGTTGGATTAATAAAGTATTTTATACATATTTTTAAAACACTACATAGGCAAGGTTTTGTAGTACACTGCAGATGCACACACTCCATTATAAATAAATTGGTGTAAAGTATTGGCAGAGGCAAGATAATCTGTTTTATAACAGGAATTTTAGAACCTATTTTCCCTAATGAAATGATTACAATGCTGTATTTATACAGGATGAATTTAAGTTGTTTTTGCGTTATAGCCGCTGGAGATGTATCTTGTGAATCAATTCACTTATTATTGTAATACTCTATGAGTTGTTTGTTTTTTCCCCAATATTTTTTTCCTCCTAGatagtttattattattatctgcattatagattttttttttgcatgcaAATAAGAGTGGAGATGCATGATTGAGATGATACACATGGCATGAAAATTATATTAACAAAAATGTAATGATGCAAATGACTATCACTATAGATA
>TU1589802
AAATAAATTGGTGTAAAGTATTGGCAGAGGCAAGATAATCTGTTTTATAACAGGAATTTTAGAACCTATTTTCCCTAATGAAATGATTACAATGCTGTATTTATACAGGATGAATTTAAGTTGTTTTTGCGTTATAGCCGCTGGAGATGTATCTTGTGAATCAATTCACTTATTATTGTAATACTCTATGAGTTGTTTGTTTTTTCCCCAATATTTTTTTCCTCCTAGatagtttattattattatctgcattatagattttttttttgcatgcaAATAAGAGTGGAGATGCATGATTGAGATGATACACATGGCATGAAAATTATATTAACAAAAATGTAATGATGCAAATGACTATCACTATAGATATTTGGgtattatgattgttttttaagtacacacacacacacacacacacgagtaaaGCAGGTCCTCAGCGTGATGGCTGCTGCGGATTCTGTGGAAAGTACTTCATATTGCATGCCTTTAATGGAATTCTGTTTTAATGAGGAGATTAATAGATAGGAATGTGAATATGGTAGCAATGGCCTTTAATTAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566656.2 False 2475 mRNA 0.49 2 56904943 56907734
TU1589802 True 562 lncRNA 0.32 2 56907366 56907957
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110492385 LOC106566733 coding upstream 74350 56825787 ~ 56830593 (+)
si:ch73-181d5.4 LOC106566730 coding upstream 84498 56790783 ~ 56820445 (+)
LOC118939462 LOC106566730 coding upstream 114014 56779988 ~ 56790929 (+)
LOC118939558 NA coding upstream 129865 56767646 ~ 56775078 (+)
LOC110492382 LOC100195767 coding upstream 142461 56729499 ~ 56762482 (+)
LOC110492389 cdh4 coding downstream 338032 57245766 ~ 57788596 (+)
LOC110492393 lsm14b coding downstream 938276 57846010 ~ 57850014 (+)
LOC110492391 ss18l1 coding downstream 946167 57853901 ~ 57873777 (+)
LOC110492396 y4629 coding downstream 968715 57876449 ~ 57887706 (+)
LOC118936470 NA coding downstream 1047182 57954916 ~ 57964183 (+)
G1392088 NA non-coding upstream 8400 56896295 ~ 56896543 (+)
G1392066 NA non-coding upstream 18537 56885743 ~ 56886406 (+)
G1392067 NA non-coding upstream 21375 56883347 ~ 56883568 (+)
G1392060 NA non-coding upstream 24885 56879814 ~ 56880058 (+)
G1392048 NA non-coding upstream 33617 56871102 ~ 56871326 (+)
G1392105 NA non-coding downstream 1537 56909271 ~ 56909470 (+)
G1392107 NA non-coding downstream 2085 56909819 ~ 56910309 (+)
G1392109 NA non-coding downstream 5608 56913342 ~ 56913542 (+)
G1392115 NA non-coding downstream 6750 56914484 ~ 56914763 (+)
G1392190 NA non-coding downstream 64749 56972483 ~ 56972838 (+)
G1391254 NA other upstream 658070 56246515 ~ 56247620 (+)
G1390616 LOC106566696 other upstream 1081751 55793024 ~ 55823192 (+)
G1390527 NA other upstream 1264644 55640022 ~ 55640299 (+)
G1390508 NA other upstream 1272105 55628694 ~ 55632838 (+)
G1392601 NA other downstream 458217 57365951 ~ 57366517 (+)
G1392616 NA other downstream 489206 57396940 ~ 57397177 (+)
G1392617 NA other downstream 493751 57401485 ~ 57402530 (+)
G1393570 LOC106566761 other downstream 1511652 58419386 ~ 58423502 (+)
G1393647 LOC106613431 other downstream 1658402 58566136 ~ 58566794 (+)

Expression

LOC110492387(LOC106566767) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110492387(LOC106566767) Expression in each Bioproject

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LOC110492387(LOC106566767) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network