LOC110492390 (taf4)


Basic Information

Item Value
gene id LOC110492390
gene name taf4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 57833449 ~ 57845200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566661.2
TCCTTAAATGTAATTTATAACAATTTATCCCAAACTGTAAATCTAACAATAACCAATCAGAGCACCCTGGAATCCGATGTGAGTGACGGAGTATCCAATCGGTGCAGGCGTCTCACGAGCGAGTAAAGATGGCGGCGGGCTCCGATTTACTGGATGATGTTTTCTTCAACACAGAGGTGGACGAGAAAGTAGTTAGTGATCTAGTTGGGTCTTTGGAGTCTGAGCTCACGGGATCGGGTCGTGGAAAGTCTTCAGTTAGGGTCCAGGCTGCAGCAAATCACATTGACAACTCAGCTGTAGGTCGCAATTCCAATGTCCAGGACAGCGAAATGGGACTTTCACAAGAGCTTGCTAAACCAGGGACTGGCGTGCCAGGGGGGGTCATTAATAGTAGGAGGTCCCAGGGTTCAACCATGTATGCTGCGGTCGGGACAACGGCGGTGGGATCGAGCATGACAGCCGGGCACAGTCCGAGCAAGACTGGGGCAGTCAGTGGTGTGATAACGGAGGTTCCCGATCACGGAGCTGGGATCAGAAAAACTGGGGCGGCTGGTGTGCAAACTTTAAATGGAAGGAGCGTTGTGATAAACTCTCATAATTCAGGAAGTGTTGCCGCTTTGGTGAGCTCGGCAAGCAGCACAGTGCCCGCCGTCGCGGTTGTCAACAACGGACCGAGCTCCGTAGTCAAAGGAAACGTAGTCTTACCCTCAACTTCCAGCACAGTCATTCAAACACCTCTTATGCACAATGCTGTCACTTCAACTGTGATATCGTCTCAGCTGTCTGTTCTAAACAGTGTGCCCACTGTCACGCTCGTGAGGCCGCCTATGCAACCCCTCGGAACAATCACCGCGCAGAGCGGGAGTAATAATACGGTTCTGATACGATCTGCCAACGTTGCCCACCCTGCAAGTTCAGAAGCGCAAATCAACACATTGGAGTCTCCAAAAACGACCACACAAACGACTTCAGAAGTGACCAGCCCCAGTGTTGTAGGTAAAAGCCTGGTTTTACAAAATGTGAGGACCTCCATCCCATCGACAATTGCAGCCTGTCCTGGTGGGATAAAGGCGATCGCGCCACAGGTGTTCTCCCCGAGACTTCCGCAACCCCAACAAAATGCTTCAAACATCCAAAACATTCAGCTCCCTCCAGGCATGGTGCTGGTACGCAGTGAGAGTGGGCAGCTTCTGATGATCCACCAGCAGACCCTGGCCCAGATGCAATCCCAGTCCCAGAGCGCCATGACCCCACGGGCAGCTACCCCCACCAGCACTCCCCCTGTCCAGATCACTTCTgtacagGCTCCAGGGACGCCCATGATGTCCCGTCAGGTGACCCCCACCATCACTAAGCAGGGCTCCACGGCCCAGACCACCGTCCAGGCCACCACCACCCTCCAGAGGCCTCCTGTACTACAACAGAACACCATTATGCTGGGTGGAGCGGCCGCCACCTCAGGTCAGGCTCCAGTGCAGCCTTGCTCAGCAGCAGTCACCCAGAGAGCAGGGACACCAGTCGTTTCTACCATGgAGATCCTGGAGAATGTGAAGAAGTGTAAGAACTTCCTGTCCACGCTGATCAAACTGGCATCCAGCGGGAAGCAGTCGTCTGAGACCACAGCCAACGTCAAGGAGTTAGTCAAGAGCCTGCTGGAGAGTAAGATCGAAGCGGAGGACTTCACCAGTCGGTTATACCGGGAgctcaactcctctcctcagccatATCTCGTGCCTTTCCTCAAGAGGAGTCTTCCTGCACTGCGTCAAATGACCCCTGACTCGGCAGCCTTCATCCAGCAGAGCCAGCTGCCTCACACTGGCGCCCAGCCTGCCGCCCCCTCCAAGGCCTTGACTGCTGCGGTGCTGGGGGGCATGTCCACGGCACAGAACTCCCGTCTCAACAGTAGTAGCCCTGGGGCCAAGGGGACCATGCACCAGTCTCCTGTCATCAGCCTGGCCCAGACACCTCATAACAAGCCTGGCCTGatggtgcCTCAGCAGCAGGGGGCAATGGGGAGGCCTCAGGTGACTCTGGCCCAGTCACCCATGGTTACGCTCCGAGGCCAGCCCCACAGTCACATCATCATGGGGCAGCCGCAGGTGGTCAGACAGCttcagacagttccTGTAGTGAAGCAGGCTCTAGCACCAGGAGCCAAGGTACCACTGGGGCCCCAGTCTATGCTCTCTGTAGTACTGAAGAACAGGCAGAAGGAGGCAGGCGGAGGAACCTTCAagGATGATGATGATATAAATGACGTGGCCTCTATGGCTGGAGTCAACCTATCAGAGGAGAGTGCCCGCATTCTGGCAACCAACTCTGAGCTGGTCGGCATGGTGACTCGCTCTTGTAAAGACGAGGCCTTCCTCTACACCTCTTCACTAACCCAGAGAGTACATGAGatagGCGGGAGGTTAGGGGTGACTGACCTGGGGCCGGAGGTGATCAGCTACGTGTCCCATGCAACACAGCATCGACTGCAGAACCTGCTGGAGAAATTGACGGTGGTGGCGCAGCAGAAAAGCATCACCTTCAAGgAGGATGATAAGTGtgaacaggtgagtgatgtgCGATCACAGCTGAAGTTCTTTGAGCAGCTGGAtcagatggagaaacagaggaaggaggagcaggagagagagatccTGATGAAGGCAGCTAAGTCTCGATCACGACAAGAGGACCCAGAGCAGCTTCGGCTTAAACAGAAGGCTAAAGAGaTGCAGCAGCAGGAACTGAATCAGATCAGGCAGAAGGAGGCCAACATGACGGCCCTGGCAGCCATCGGCCCCAGGAAGAAAAGGAAAATGAACTTCCCTGTCAGCGGAACCGGGGCTGAGgACTTGTGCTCTGGTCCCTCTCCGTCAGGTGGGTACAGTAGCGGAGGCTCCAGGCCTCAGCGCCAGCGCATCACCCGGGTTAACCTCAGGGACCTGCTCTTCTGTCTGGAAAATGAGAGGGAGACCAGCCGCTCACACCTGCTCTATAAAGGCCTCCTCAAATAACACAGGGAGACCGGACATGCCCAATAACGCTTTTCTAAGGGACAAGAAATGAATGAGACTAACCAAGTCACTCACCTCCctaacagacagagaccagccaCTCCCTATAGCACCTCCctaacagacagagaccagccaCTCCCTCTATAGCACCTCCctaacagacagagaccagccaCTCCCTCTATAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACTTCCctaacagacagagaccagccaCTCCCTATAGCACTTCCctaacagacagagaccagccaCTCCCTCTATAGCACCTCCctaacagacagagaccagccactccctatagctcctccctaacagacagagaccagccaCTCCCTATAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACTTCCctaacagacagagaccagccaCTCCCTATAGCACTTCCctaacagacagagaccagccaCTCCCTATAGCACTTCCctaacagacagagaccagccaCTCCCTCTAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACTTCCctaacagacagagaccagccaCTCCCTCTATAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACCTCCctaacagacagagaccagccaCTCCCTCTATAGCACCTCCctaacagacagagaccagccaCTCCCTATAGCACTTCCctaacagacagagaccagccaCTCCCTCTATAGCACCTCCCTAACACAGAGACCAGCCACTCCCTATAGCACCTCCCCTAGAGACAAGAACAACCAATAGCACCTCCCTCAAAGGGCAAGATAGACCAGCTACCCTTGATGGTACCGTCTCTTCCTCTGTGCTCTCCTAGAATCATGACCTCCTAGACTAGAGGAGAGACCAATGACACCTGGAAAATGAATAATCAGCTGAACCCTACACTCCCTCCTCAAGAGAGACCAGGCTGTTGCAGCTGTGAAACAATGAGTTGTTGGGACTGACCTATCAGACTAGCTCTTCTGGCCTTCTTCGCAATTgcctgatccctcctgatgacccagtTGGACATGACTTCAACAAGGTCACCAGGAGAGATCTGCCAATAAAGTTGGAAGTCCCACCTAGTTGACCACATTAAAATGGTGGATGCCCCCAATGGCGCTGCCTATGCTAATACGGCCTTTTGTCCACTAGAGGCCTCAATCATTCTCCATGTTAGAGACCTGCTACTGGCAACCAGGTCCCCTCCCATACACTCCCCTAGAGGGGAAATGCTCTTATTTGTGAGGTCTCCTTTGGGTCTGGAAATATCCTCATGTTTTGCAGTAGGGACATGCATTAGCTTTTCCATCCTTTAACCTCATGCAATATATGATTAGACGTTCTTTAGAAAGATCCCCAGCTAGAGGACTTTTAAACACGTTTAACCAACAAATGTATAAACCTGCAGGAGTAACGTCAAATACCTGACGATACAGAGACTCTTTGCATTTTGTTGAGGAGACgttttatttttcctattttctagtCATTCATTCTAGTGCTCTTTTACTGACTGAGGATTATTTTCATTTGACTGGTATTACTCTTCCATCGAGCTGCCTTGCAGCCATAATAAGCCATATTAATCATACATCTCTAACTCTCCACCTCTGATGACAGAACTCCTTCTCAATCAGTCAATATTCCACAGAGATTTTAGACTTGTTTGATTTCTGCTTTAGCATCTCTTCCCAGGTGATTGTGTGTTGGACTTTGTTTTTAATCACTTATAATGATTATTTATTTTGTCAGCATGTCTGTTGCTAACATTTGTACATGTATATGCatacatgaaaacacacacacatcctatggAAGCAGTCGGTAAATTGTAGGTTTTTATCAGTAGACCGTGTGAAGAAAttgatatacaatatatatatatattttttttttcagaagAGTAATGTAAAACAATTTACATTAATTAATTGATGCAACAATGAAAAGTGAGACTGATGCAAAGTTGGCAATAGGTAGCGTTTATGATTGAAGGGAGGCCATTGCTAGCTGCCATGGTGATGTGGGATGGTATGCAGAATGCACCCCCGAACGATCCGTTTTTTAATCAAGCAGTCGGTCAGAAGCATACACCCACTTTATGTATATTCTTTATATTTCTTAGCGCACATACTAATTGGTTGGTTGTTAAGCTTTTGGATGGTATTGATGAAACCTTTCAGACTGTACATATTTTTCAATACTGTAGCCCCTAGCAGCTGTTACGCATCTTTCCCTTTATCCATGTTCTATCAGAGAACTGTTTTTAGTGAAAAACCTGAAGCAGATGACTTCTTATTAATATCTTGTACATTTTGCACAGCCACTTGTTAATATGTAAATATTCTAACTGAAAGAATGTTTTTTAATTGCAATTGTTTTATAGTTGATTGAGAGAGAATGCTCTCCttcattaaaaaaatgaaaaa

Function

symbol description
taf4 Enables aryl hydrocarbon receptor binding activity. Contributes to RNA polymerase II general transcription initiation factor activity and core promoter sequence-specific DNA binding activity. Involved in transcription initiation from RNA polymerase II promoter. Located in chromatin; cytosol; and nucleoplasm. Part of MLL1 complex; transcription factor TFIID complex; and transcription factor TFTC complex.

NR:

description
transcription initiation factor TFIID subunit 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566661.2 True 5627 mRNA 0.50 16 57833449 57845200

Neighbor

gene id symbol gene type direction distance location
LOC110492388 LOC106566734 coding downstream 895788 56915659 ~ 56937661 (-)
LOC118939559 NA coding downstream 955660 56876298 ~ 56877789 (-)
LOC110491121 ogfr coding downstream 957529 56857071 ~ 56875920 (-)
col9a3 LOC106566732 coding downstream 978930 56830760 ~ 56854519 (-)
LOC110492380 LOC106566729 coding downstream 1104275 56713782 ~ 56729174 (-)
LOC110492394 psma7 coding upstream 5204 57849674 ~ 57853907 (-)
LOC110492397 NA coding upstream 42509 57887491 ~ 57893319 (-)
LOC110492399 cdh26 coding upstream 53271 57898471 ~ 57921688 (-)
LOC110492401 LOC106566743 coding upstream 120607 57965807 ~ 58000251 (-)
LOC118939561 NA coding upstream 224988 58070188 ~ 58070751 (-)
G1393241 NA non-coding downstream 20908 57812119 ~ 57812541 (-)
G1393236 NA non-coding downstream 30319 57798893 ~ 57803130 (-)
G1393232 NA non-coding downstream 36297 57796829 ~ 57797152 (-)
G1393228 NA non-coding downstream 42878 57790100 ~ 57790571 (-)
G1393230 NA non-coding downstream 43590 57789492 ~ 57789859 (-)
G1393777 NA non-coding upstream 52066 57897266 ~ 57897480 (-)
G1393804 NA non-coding upstream 108703 57953903 ~ 57964191 (-)
G1393818 NA non-coding upstream 139125 57984325 ~ 57986463 (-)
G1393900 NA non-coding upstream 278726 58123926 ~ 58124202 (-)
G1393905 NA non-coding upstream 286407 58131607 ~ 58131820 (-)
G1391869 NA other downstream 1292520 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 1396170 56424272 ~ 56437279 (-)
LOC110492371 adcy6 other downstream 1539977 56240763 ~ 56293503 (-)
G1391624 NA other downstream 1607388 56225414 ~ 56226061 (-)
G1391586 NA other downstream 1768587 56064503 ~ 56064862 (-)
G1393949 LOC105029132 other upstream 359559 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 428828 58274028 ~ 58278427 (-)
LOC110492410 LOC106566756 other upstream 457311 58302511 ~ 58315644 (-)

Expression


Co-expression Network