LOC110492397


Basic Information

Item Value
gene id LOC110492397
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 57887491 ~ 57893319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947375.1
aggcctcagagagagagagacagtaaaagagagcaagagagagataaaTACTGAAGCCAGGACACGTCTCTTGAGCTGTGTTTTCACCTCAGGTGGCCTGTATCTGTATTGTACTTAGGGATCAAGCCCACACTCTGTGGCATTGGAGTAACATAATTTCACACATCTGGATACATGATGGGGATGACTACAACTACATGTCTGCTCATGATACTGGATACACAGTGAACCTGGTGAAGGAGAACCCAGGGTACGCAGGTCACTACGACCTGCTGCTCATGGTGTTGGACCAGCAGGGTCAGGGAGCCCTCCACAATCTATCCGTCACCGTGTATGACTGCTCTGGTGGCCAGCTGCAGTCTCGGCAGGGCCTCTGGAACCAAGATTGGAGCGAGGGCTGTAGGGATTGTCATCGGTGTCACGCTGCTACTGCTAAGTTTTCTACTGTTGTCCCTCCTGTTGACCAGTAAAAAAATAACTGAAGCTGATCCCTACAGATGAAAACTCTGAAGAACGTCAGATCAAATCTAACATTGAGATCCCAGGAACTGATTGCAAGGTAACAACAGACATTACCATCACATTCATCTCTGGTCATTGCTTTTTTCCATCACACAATATGCTATTTTGATCATAGGTGTCTACATGTATCACACTCAAAGTGGACAGTCTGCTGGGAACAAAAGCTGATTTTCTACCAATCAAGATGCCGGCTGAACAGGAGTCCACCAGTATGCGAGCACCGGTATGTTCAGGATATTCAGGGTATTTTTCCTCATACCAAGAGCAACGGGAACAGTTTCAACGAGGAACCTCTCTGCACaagAGGATGTTAATTCTGCAGATTCCCGGAGAGGAGCTGGGGGACTATGCCCCCCACCCCTACGCTAAAGAGGGGGACCTAGAGACCGACCTCCAGCTGGGTGCTATTGCCATCCGAGACCAGGAAAAGCTACTCTACTTGGGCGCCAGGTTCAACACGCTGGCCTCCATTTGCAACACCCCATACCCCAGCGCATCCTAAGCccacctctccctcaccctcttggGCAAGAGGCTCTGCCAGGACTGGCTAGTTAGCATGGGCATAACAGGCTAGGTACCGGCTGCTTTCATGGATTATAAATTGAACTGATCACTCATGCTTAAAAATGAGGTAGAACAGCAAACCTCCTCTTGGAAAATCTGGATAACAACAAACAATGTTAAACTTACTTTTTTTTCAAGCATAAAATACACAGGACTATGGAGATCAATGACCAATACAAAGACCAAGATGGAACTCAGTGCTGGAAGGAAAATAAATGCAATTTACCAATGGATCTTACATGGGCAGTAGCTATGTACAGCTGTGCCGTAGGGAGCCTGGTTGTACATATCAGGCATGCTACATTCTACTCTATTGTACACTGGCCAGGGCTCACTGGTTTGACCAGCCAGCAAAAAACAAATGGATTTCTGCACTGAGAACAGACCAGGGAAGTGAGCAACATGGAGTGGAAAATACTTGAATGTCAATTACTTTTTAGCTCTGATTTTACAAATGCGATGGCTGCAATGAAATAGTGCTATAAtggtgaatgagagagaaaggtcATTCTTTTAACATACCATCTCTTACCCACATATGGCAAGATAAAAATAGTCTAATGATGTTACATATGATGGTCATGTTTAAGATTATTATCAATTAAACACTTGGGCTTAAGTCCAGTTGTTTTATTTGGGTGTATATATTTTGAGGTTGTCTTTTAATGTATATTCTATATGGTATGTAAATAAGGGAAAGCACAAATTGAGTTCTGTGGCATATTTTCATACGCCTCAGGTCACGGTATCAATGAAACAACCATCTTCGCAAAA
>XR_005036561.1
aggcctcagagagagagagacagtaaaagagagcaagagagagataaaTACTGAAGCCAGGACACGTCTCTTGAGCTGTGTTTTCACCTCAGGTGGCCTGTATCTGTATTGTACTTAGGGATCAAGCCCACACTCTGTGGCATTGGAGTAACATAATTTCACACATCTGGATACATGATGGGGATGACTACAACTACATGTCTGCTCATGATACTGGATACACAGTGAACCTGGTGAAGGAGAACCCAGGGTACGCAGGTCACTACGACCTGCTGCTCATGGTGTTGGACCAGCAGGGTCAGGGAGCCCTCCACAATCTATCCGTCACCGTGTATGACTGCTCTGGTGGCCAGCTGCAGTCTCGGCAGGGCCTCTGGAACCAAGATTGGAGCGAGGGCTGTAGGGATTGTCATCGGTGTCACGCTGCTACTGCTAAGTTTTCTACTGTTGTCCCTCCTGTTGACCAGTAAAAAAATAACTGAAGCTGATCCCTACAGATGAAAACTCTGAAGAACGTCAGATCAAATCTAACATTGAGATCCCAGGAACTGATTGCAAGGTGTCTACATGTATCACACTCAAAGTGGACAGTCTGCTGGGAACAAAAGCTGATTTTCTACCAATCAAGATGCCGGCTGAACAGGAGTCCACCAGTATGCGAGCACCGGTATGTTCAGGATATTCAGGGTATTTTTCCTCATACCAAGAGCAACGGGAACAGTTTCAACGAGGAACCTCTCTGCACaagAGGATGTTAATTCTGCAGATTCCCGGAGAGGAGCTGGGGGACTATGCCCCCCACCCCTACGCTAAAGAGGGGGACCTAGAGACCGACCTCCAGCTGGGTGCTATTGCCATCCGAGACCAGGAAAAGCTACTCTACTTGGGCGCCAGGTTCAACACGCTGGCCTCCATTTGCAACACCCCATACCCCAGCGCATCCTAAGCccacctctccctcaccctcttggGCAAGAGGCTCTGCCAGGACTGGCTAGTTAGCATGGGCATAACAGGCTAGGTACCGGCTGCTTTCATGGATTATAAATTGAACTGATCACTCATGCTTAAAAATGAGGTAGAACAGCAAACCTCCTCTTGGAAAATCTGGATAACAACAAACAATGTTAAACTTACTTTTTTTTCAAGCATAAAATACACAGGACTATGGAGATCAATGACCAATACAAAGACCAAGATGGAACTCAGTGCTGGAAGGAAAATAAATGCAATTTACCAATGGATCTTACATGGGCAGTAGCTATGTACAGCTGTGCCGTAGGGAGCCTGGTTGTACATATCAGGCATGCTACATTCTACTCTATTGTACACTGGCCAGGGCTCACTGGTTTGACCAGCCAGCAAAAAACAAATGGATTTCTGCACTGAGAACAGACCAGGGAAGTGAGCAACATGGAGTGGAAAATACTTGAATGTCAATTACTTTTTAGCTCTGATTTTACAAATGCGATGGCTGCAATGAAATAGTGCTATAAtggtgaatgagagagaaaggtcATTCTTTTAACATACCATCTCTTACCCACATATGGCAAGATAAAAATAGTCTAATGATGTTACATATGATGGTCATGTTTAAGATTATTATCAATTAAACACTTGGGCTTAAGTCCAGTTGTTTTATTTGGGTGTATATATTTTGAGGTTGTCTTTTAATGTATATTCTATATGGTATGTAAATAAGGGAAAGCACAAATTGAGTTCTGTGGCATATTTTCATACGCCTCAGGTCACGGTATCAATGAAACAACCATCTTCGCAAAA
>TU1591622
agagagataaaTACTGAAGCCAGGACACGTCTCTTGAGCTGTGTTTTCACCTCAGGTGGCCTGTATCTGTATTGTACTTAGGGATCAAGCCCACACTCTGTGGCATTGGAGTAACATAATTTCACACATCTGGATACATGATGGGGATGACTACAACTACATGTCTGCTCATGATACTGGATACACAGTGAACCTGGTGAAGGAGAACCCAGGGTACGCAGGTCACTACGACCTGCTGCTCATGGTGTTGGACCAGCAGGGTCAGGGAGCCCTCCACAATCTATCCGTCACCGTGTATGACTGCTCTGGTGGCCAGCTGCAGTCTCGGCAGGGCCTCTGGAACCAAGATTGGAGCGAGGGCTGTAGGGATTGTCATCGGTGTCACGCTGCTACTGCTAAGTTTTCTACTGTTGTCCCTCCTGTTGACCAGTAAAAAAATAACTGAAGCTGATCCCTACAGATGAAAACTCTGAAGAACGTCAGATCAAATCTAACATTGAGATCCCAGGAACTGATTGCAAGGTGTCTACATGTATCACACTCAAAGTGGACAGTCTGCTGGGAACAAAAGCTGATTTTCTACCAATCAAGATGCCGGCTGAACAGGAGTCCACCAGTATGCGAGCACCGGTATGTTCAGGATATTCAGGGTATTTTTCCTCATACCAAGAGCAACGGGAACAGTTTCAACGAGGAACCTCTCTGCACaagAGGATGTTAATTCTGCAGATTCCCGGAGAGGAGCTGGGGGACTATGCCCCCCACCCCTACGCTAAAGAGGGGGACCTAGAGACCGACCTCCAGCTGGGTGCTATTGCCATCCGAGACCAGGAAAAGCTACTCTACTTGGGCGCCAGGTTCAACACGCTGGCCTCCATTTGCAACACCCCATACCCCAGCGCATCCTAAGCccacctctccctcaccctcttggGCAAGAGGCTCTGCCAGGACTGGCTAGTTAGCATGGGCATAACAGGCTAGGTACCGGCTGCTTTCATGGATTATAAATTGAACTGATCACTCATGCTTAAAAATGAGGTAGAACAGCAAACCTCCTCTTGGAAAATCTGGATAACAACAAACAATGTTAAACTTACTTTTTTTTCAAGCATAAAATACACAGGACTATGGAGATCAATGACCAATACAAAGACCAAGATGGAACTCAGTGCTGGAAGGAAAATAAATGCAATTTACCAATGGATCTTACATGGGCAGTAGCTATGTACAGCTGTGCCGTAGGGAGCCTGGTTGTACATATCAGGCATGCTACATTCTACTCTATTGTACACTGGCCAGGGCTCACTGGTTTGACCAGCCAGCAAAAAACAAATGGATTTCTGCACTGAGAACAGACCAGGGAAGTGAGCAACATGGAGTGGAAAATACTTGAATGTCAATTACTTTTTAGCTCTGATTTTACAAATGCGATGGCTGCAATGAAATAGTGCTATAAtggtgaatgagagagaaaggtcATTCTTTTAACATACCATCTCTTACCCACATATGGCAAGATAAAAATAGTCTAATGATGTTACATATGATGGTCATGTTTAAGATTATTATCAATTAAACACTTGGGCTTAAGTCCAGTTGTTTTATTTGGGTGTATATATTTTGAGGTTGTCTTTTAATGTATATTCTATATGGTATGTAAATAAGGGAAAGCACAAATTGAGTTCTGTGGCATATTTTCATACGCCTCAGGTCACGGTATCAATGAAACAACCATCTTCGCAAAATATGAATTTACTGTCATTTAATGTTAAATTCCCaaccatcagcagcatcaacaTGCCCATAGCGAAACTTaagcacaagtgtgtgtgtgtgtgttgtgtattcaCTTGGGAATGTAGCCAGCCTGTAGGAACCAGTGGTAGGCAGAGAGAGCACTGGGTGTGATCTCCTGCTCCACCTGGAAACCTTTCTGTGGGTAGTCACGGATCCTCTCTAGAAC

Function

NR:

description
uncharacterized protein LOC110492397 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947375.1 False 1863 mRNA 0.45 5 57887709 57893319
XR_005036561.1 False 1785 mRNA 0.45 6 57887709 57893319
TU1591622 True 1966 TUCP 0.45 6 57887491 57893282

Neighbor

gene id symbol gene type direction distance location
LOC110492394 psma7 coding downstream 33802 57849674 ~ 57853907 (-)
LOC110492390 taf4 coding downstream 42509 57833449 ~ 57845200 (-)
LOC110492388 LOC106566734 coding downstream 950048 56915659 ~ 56937661 (-)
LOC118939559 NA coding downstream 1009920 56876298 ~ 56877789 (-)
LOC110491121 ogfr coding downstream 1011789 56857071 ~ 56875920 (-)
LOC110492399 cdh26 coding upstream 5152 57898471 ~ 57921688 (-)
LOC110492401 LOC106566743 coding upstream 72488 57965807 ~ 58000251 (-)
LOC118939561 NA coding upstream 176869 58070188 ~ 58070751 (-)
LOC118939560 NA coding upstream 180588 58073907 ~ 58078433 (-)
LOC110492403 LOC106566745 coding upstream 200223 58093542 ~ 58097736 (-)
G1393241 NA non-coding downstream 75168 57812119 ~ 57812541 (-)
G1393236 NA non-coding downstream 84579 57798893 ~ 57803130 (-)
G1393232 NA non-coding downstream 90557 57796829 ~ 57797152 (-)
G1393228 NA non-coding downstream 97138 57790100 ~ 57790571 (-)
G1393230 NA non-coding downstream 97850 57789492 ~ 57789859 (-)
G1393777 NA non-coding upstream 3947 57897266 ~ 57897480 (-)
G1393804 NA non-coding upstream 60584 57953903 ~ 57964191 (-)
G1393818 NA non-coding upstream 91006 57984325 ~ 57986463 (-)
G1393900 NA non-coding upstream 230607 58123926 ~ 58124202 (-)
G1393905 NA non-coding upstream 238288 58131607 ~ 58131820 (-)
G1391869 NA other downstream 1346780 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 1450430 56424272 ~ 56437279 (-)
LOC110492371 adcy6 other downstream 1594237 56240763 ~ 56293503 (-)
G1391624 NA other downstream 1661648 56225414 ~ 56226061 (-)
G1393949 LOC105029132 other upstream 311440 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 380709 58274028 ~ 58278427 (-)
LOC110492410 LOC106566756 other upstream 409192 58302511 ~ 58315644 (-)
G1394067 NA other upstream 531139 58424458 ~ 58428113 (-)
G1394341 NA other upstream 853551 58746870 ~ 58747299 (-)

Expression


Co-expression Network