LOC110492403 (LOC106566745)


Basic Information

Item Value
gene id LOC110492403
gene name LOC106566745
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58093542 ~ 58097736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566691.2
TTTACTTTCATTTTCACTTAAAAAGGCGCCCCGAGCACTTCTACAGTGCTTGATGATTACTTTCATGGCAACATTTCCATGGTCATATTCGTTGTGCTGAAACATAGACATTTTATTTGATAACAATTTATTTTGATGAATCATTTTGTGTTAGCGTGTTATAGGTCTACTTGTGGTCTACACGTACAACTACAACTTTTAGATTTTTTGTTCGGAGCCTATTTTTTTCATATGTATTTTGAAGATGGTGGAGCTGGTCAAGAAAATGCGTTTGAGAGAGTGGCTGATAGCGCAGATAGACAGCGGAAAGTATACAGGACTTACCTGGGAGAACGAAGACAAAACTATGTTCAGGATCCCATGGAAACACGCGGCAAAACAGGACTATAGTCTGAACGAAGATGCAGCACTATTCAAGGCGTGGGCAGTGTATAAGGGGAAGTATCGGGAGGGGAGGGACAAGGCAGATCCCACCACCTGGAAGACTCGtctccgctgtgccttcaacaaGAGCACAGACTTCAAAGAAGTCCCAGAGCGCAGCCAGTTAGATGTATCCGAGCCCTACAAGGTCTACCACATCCAGGCAGAgccagagacaggcagagactcAGAATCTCCTCAGCCTGAGAGTCAGATGATCATCCAGACCAGCCGCTCCAGTGTTCCACTGAGGAACATTGTCACACACCATCCACAGTTTGGCTGCAATAGTGAATCAGAGGCCAGGGATGGAAGAGTCAACTCCAGAGAGGGCTTGGCAGGGGACCATATGTACTACTGGTCCAACACAGGGAATCCTCAGAGGGAtggctctgctcctctctccatagTCGTCCCTACACCACAGATCTCTGacttGCGTGTGCGGGTGTGTCTGTTCTATCAGGGCCAGCTAGTAGTGGATGTGACCACCAGCACCCCAGACGGCTGTTTCCTCCTGCAGGGTCAAGTGCCCCTGGGGAATGAGAGGATCTATGGACCCTGCACAGCCCAACAGGTCCCCTTCCCCCCTCCAGGGGTCATCCATCTTCCCCCGGGCATCGCTGAGGCCATGGGCCGCCTGCTGCCCCACCTGGAGAGGGGCGTCCTGGTGTGGGTTGCTCCAGACGGGGTGTTTATCAAGAGGTTCTGCCAGGGCAGGGTGTACTGGAGTGGCCCCCTGgcccaacacacagacaggcccAACAAACTGGACAGGGAGAGGACCTGCAAGCTGCTGGACACAGCTATATTTCTGAAGGAGCTCCAGGACTATATCCAGGGGGCGGGACCCAAACCTCGCTATGAGATTGACCTCTGCTTTGGTGAGGAGTTTCCTGACGCCAGCCAACTGAAAACCAGGAAACTGATCATTGCACAGGTGGTGCCCCTGTTTGCTGTCAACCTACTGCATAGGTGCCTGaggatggggacagaggggagaccgcaccttcacacacacaagaccatgggggaagagggagagggtcaGCCACACCCCCTGCCCCAGCGGTAAGGAGCCCAGGACACCCCTCTGAGTAACCCCTGGGGAACATCACCAGTCCCCCCTGGTGGCCCCTCCTGTCCCAGCTTAGCCAGCCATGATGGGGGGTGAGTGGAGACTCAAGACACGGTCAGTGTAGGTTTACTGTATGCCCTGTGGAAAGCAACATATACCTCAACCTTAAGAGAGCAGAGAACAATATGATACGACACAGGTAGGAGCAAGTATGCTTGGAACAGATATATCTCACATAGTTTTCTTAAATCGataatctgcagttgctacatctattaaaaaaatctagaaaaaagtAGGATATGTACCAaatgattattgaagaatataacttataaatgtctCATGGGGTTAGTTCaacaaaatataagcttgtttaac

Function

NR:

description
IRF10 isoform-a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566691.2 True 1882 mRNA 0.50 8 58093542 58097736

Neighbor

gene id symbol gene type direction distance location
LOC118939560 NA coding downstream 15109 58073907 ~ 58078433 (-)
LOC118939561 NA coding downstream 22791 58070188 ~ 58070751 (-)
LOC110492401 LOC106566743 coding downstream 93291 57965807 ~ 58000251 (-)
LOC110492399 cdh26 coding downstream 171854 57898471 ~ 57921688 (-)
LOC110492397 NA coding downstream 200223 57887491 ~ 57893319 (-)
LOC110491122 LOC106566746 coding upstream 7364 58105100 ~ 58162080 (-)
LOC100136178 LOC100136178 coding upstream 131325 58229061 ~ 58235899 (-)
LOC110492410 LOC106566756 coding upstream 204775 58302511 ~ 58315644 (-)
LOC110492413 LOC106566757 coding upstream 268983 58366719 ~ 58394501 (-)
LOC110492417 LOC106566761 coding upstream 325168 58422904 ~ 58667831 (-)
G1393818 NA non-coding downstream 107079 57984325 ~ 57986463 (-)
G1393804 NA non-coding downstream 129351 57953903 ~ 57964191 (-)
G1393777 NA non-coding downstream 196062 57897266 ~ 57897480 (-)
G1393241 NA non-coding downstream 281001 57812119 ~ 57812541 (-)
G1393236 NA non-coding downstream 290412 57798893 ~ 57803130 (-)
G1393900 NA non-coding upstream 26190 58123926 ~ 58124202 (-)
G1393905 NA non-coding upstream 33871 58131607 ~ 58131820 (-)
G1393908 NA non-coding upstream 37374 58135110 ~ 58135321 (-)
G1393910 NA non-coding upstream 38689 58136425 ~ 58136643 (-)
G1393914 NA non-coding upstream 42988 58140724 ~ 58141083 (-)
LOC110492394 psma7 other downstream 239756 57849674 ~ 57853907 (-)
G1391869 NA other downstream 1552613 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 1656263 56424272 ~ 56437279 (-)
LOC110492371 adcy6 other downstream 1800070 56240763 ~ 56293503 (-)
G1393949 LOC105029132 other upstream 107023 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 176292 58274028 ~ 58278427 (-)
G1394067 NA other upstream 326722 58424458 ~ 58428113 (-)
G1394341 NA other upstream 649134 58746870 ~ 58747299 (-)

Expression


Co-expression Network