LOC100136178 (LOC100136178)


Basic Information

Item Value
gene id LOC100136178
gene name LOC100136178
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58229061 ~ 58235899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124456.1
ATGAACGACATCTACAAAGCAGCGGTAGAGCAGCTGACAGACGAGCAGAAAAACGAGTTCAAAGCGGCCTTTGACATCTTTATCCAGGATGCGGAGGACGGCTGCATCAGTACCAAGGAGCTGGGCAAGGTGATGAGGATGCTGGGGCAGAACCCCACCCCCGAGGAGCTGCAGGAGATGATCGATGAGGTGGATGAAgatgGCAGTGGAACTGTGGACTTTGATGAGTTCCTGGTGATGATGGTGAGGTGCATGAAGGACGACAGCAAAGGGAAAACAGAGGAGGAACTGGCAGATCTCTTCTGCATGTTTGACAAGAATGCGGACGGCTATATAGACCTGCAGGAGCTGAAGGTAATGCTGGAGGCCACAGGGGAGGCCATCACTGAGGACGACATTGAGGAGCTCATGAAGGACGGAGACAAGAACAACGATGGGAAAATCGACTACGACGAGTTTTTAGAGTTCATGAAAGGAGTAGAATAA

Function

NR:

description
troponin C

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K05865 TNNC1; troponin C, slow skeletal and cardiac muscles

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124456.1 True 486 mRNA 0.51 6 58229061 58235899

Neighbor

gene id symbol gene type direction distance location
LOC110491122 LOC106566746 coding downstream 66981 58105100 ~ 58162080 (-)
LOC110492403 LOC106566745 coding downstream 131325 58093542 ~ 58097736 (-)
LOC118939560 NA coding downstream 150628 58073907 ~ 58078433 (-)
LOC118939561 NA coding downstream 158310 58070188 ~ 58070751 (-)
LOC110492401 LOC106566743 coding downstream 228810 57965807 ~ 58000251 (-)
LOC110492410 LOC106566756 coding upstream 66612 58302511 ~ 58315644 (-)
LOC110492413 LOC106566757 coding upstream 130820 58366719 ~ 58394501 (-)
LOC110492417 LOC106566761 coding upstream 187005 58422904 ~ 58667831 (-)
LOC110491123 LOC106566759 coding upstream 439839 58675738 ~ 58730339 (-)
LOC110491124 LOC106566606 coding upstream 600742 58836641 ~ 58847057 (-)
G1393955 NA non-coding downstream 16324 58212525 ~ 58212737 (-)
G1393947 NA non-coding downstream 30283 58198519 ~ 58198778 (-)
G1393945 LOC106566749 non-coding downstream 33704 58191744 ~ 58195357 (-)
G1393929 NA non-coding downstream 59435 58168843 ~ 58169626 (-)
G1393979 NA non-coding upstream 14243 58250142 ~ 58250445 (-)
G1393983 NA non-coding upstream 18943 58254842 ~ 58255061 (-)
G1393995 LOC106571908 non-coding upstream 31880 58267779 ~ 58268135 (-)
G1394005 NA non-coding upstream 58787 58294686 ~ 58294948 (-)
G1394018 LOC106566755 non-coding upstream 93806 58329705 ~ 58355527 (-)
G1393949 LOC105029132 other downstream 21896 58204759 ~ 58207165 (-)
LOC110492397 NA other downstream 335779 57887491 ~ 57893319 (-)
LOC110492394 psma7 other downstream 375275 57849674 ~ 57853907 (-)
G1391869 NA other downstream 1688132 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 1791782 56424272 ~ 56437279 (-)
G1393997 LOC106566752 other upstream 38129 58274028 ~ 58278427 (-)
G1394067 NA other upstream 188559 58424458 ~ 58428113 (-)
G1394341 NA other upstream 510971 58746870 ~ 58747299 (-)

Expression


Co-expression Network