LOC118939563 (cf105)


Basic Information

Item Value
gene id LOC118939563
gene name cf105
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58871749 ~ 58877502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947394.1
ccggatgcttcacatttatacatccggtgaaatatctggctcattgttctatctgtgcggAAGCTCAAAAGCTGTCGAAATGGCTACGACCATGTCATGGGGATCATATCTCCTCATTCATGTAGTAATATTTTCATGGTATGTCTTTACCTTATCGGCGAATTGTTCATTGAAAGTCACACAGGGCCATCCAGGAGCTAAAACATATGGTGGCCGCTGGAAATATCTGACTTTCCTCAATCTGGTTTTGCAGACAGTGTTCTTCGGACTCGTTGTTTTGATTGACATTATCCACCTGATATTGCCATCCAAAAATTTGAGGTGTGGTGTACCTCTCCTCCTAGTGAAATTAAGAGACACCATTTTCACTATTTGGGCTTTTCCTATTGGGACATTTGTGTTCTTGTCCTTCTGGTCGATATATCACTACAACAGAGAGCTGGTGTTTCCAAAGTTTCTAGATGACATTATTCCTATCTGGTTGAACCATGCTATGCATACGGTCACCCTGCCATTGGCGCTGTTGCAGATGTATATTCAGCCTCATAGATATGGCAGCAAGATGAGAGGCCTTCTAGGTCTGTCTATCTTAGCTGTTCTTTATCTGGGATGggttCTGTGGGTGCACCATGTGGCTGGTATCTGGGTCTACCCCATCATGGAGCGTCTGAGTCCTATGGGCCTGGTGATATTCCTGGGGGTGTCGTCCATCACCGTGGCTCCCCTCTACCTGCTGGGGGAGAAACTCAACCACAAGATCTGGAAGACCACTGCAGTATCTGCAGggcctcagagaaagaagaagaaataAGTGTGTGCTGGCATGTAAGCTGAGAGCCACAGAGGGGatcagagaggacagacaggaccGGTACAACCAGCACTGATCACCTCACCCAAAAAGAGACTGGTGGATCTCTTGGTGAAGGTAGAAGTTGCCCCTAATcacagatctagaatcagattACCTTACCCTCAGTCCTATTTATAACCTTTAGCATTAAACAACTATATCTTATCCTGTATGAATAGTTAGAGTCAACTTGTACCTGCTCGGTATCTCTCAGGCAGCTCTCAGGCAGCTCTCAGGCAGTGGGCATTATGTGCTTCTATGGTCAGATGCCAAATAATTTTAAGATTCCATTCAGTAATTAGACTTTATTTACTCCACCACAGGATATTGTGCTGTGTCACATTGAGGTAACAGCTCAATATAATATTTGATATTAAGTTGGTCCTTTATTGGTTGAGTTAACCCATATTGTTCTCTTACGTGGCGTAATAATATTACAGTATAAATACATTTTGTGGTTCTATTACCTTTATCATGATGCTGTTTCACTTGATACGGTACTGTTGGTTGTGAAAGGCACAGTTCCTTATGTGCATTTGTTattttacattttgaattcaatttatactgtatgttgactTTTAGAACACTATGGTTCCTTATGTAACTTGGAGGGAAGTAAGAACAAGATCAAATGAAATTAAAAGATTTGAATTATA

Function

NR:

description
androgen-dependent TFPI-regulating protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947394.1 True 1512 mRNA 0.42 6 58871749 58877502

Neighbor

gene id symbol gene type direction distance location
LOC110492419 LOC106566607 coding downstream 958 58865549 ~ 58870791 (-)
LOC110491124 LOC106566606 coding downstream 24692 58836641 ~ 58847057 (-)
LOC110491123 LOC106566759 coding downstream 141410 58675738 ~ 58730339 (-)
LOC110492417 LOC106566761 coding downstream 203918 58422904 ~ 58667831 (-)
LOC110492413 LOC106566757 coding downstream 477248 58366719 ~ 58394501 (-)
LOC110492420 NA coding upstream 9174 58886676 ~ 58896965 (-)
LOC118939564 NA coding upstream 142402 59019837 ~ 59051938 (-)
LOC110492425 LOC106566615 coding upstream 298432 59175934 ~ 59206144 (-)
plxnd1 LOC106566625 coding upstream 536510 59413470 ~ 59538798 (-)
LOC110492431 LOC106566626 coding upstream 663885 59541387 ~ 59640728 (-)
G1394399 NA non-coding downstream 44589 58826797 ~ 58827160 (-)
G1394390 NA non-coding downstream 58748 58812747 ~ 58813001 (-)
G1394384 NA non-coding downstream 65225 58806312 ~ 58806524 (-)
G1394376 LOC106566675 non-coding downstream 81339 58788659 ~ 58790410 (-)
G1394250 NA non-coding downstream 139818 58731701 ~ 58731931 (-)
G1394447 NA non-coding upstream 550 58878052 ~ 58878279 (-)
G1394450 NA non-coding upstream 1885 58879387 ~ 58879857 (-)
G1394656 NA non-coding upstream 26823 58904325 ~ 58904573 (-)
G1394670 NA non-coding upstream 55539 58933041 ~ 58935197 (-)
G1394341 NA other downstream 124450 58746870 ~ 58747299 (-)
G1394067 NA other downstream 443636 58424458 ~ 58428113 (-)
LOC110492410 LOC106566756 other downstream 565108 58302511 ~ 58315644 (-)
G1393997 LOC106566752 other downstream 593322 58274028 ~ 58278427 (-)
G1394768 LOC106566610 other upstream 233870 59111372 ~ 59112897 (-)
G1394978 LOC106566621 other upstream 476698 59354200 ~ 59356849 (-)
G1396467 NA other upstream 1677254 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 1784054 60661556 ~ 60672085 (-)
G1396543 NA other upstream 1816107 60693609 ~ 60694036 (-)

Expression


Co-expression Network