LOC110492420


Basic Information

Item Value
gene id LOC110492420
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58886676 ~ 58896965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566730.2
CCATGACACTTTACCCGAATCGGATCATTGTTGTTTACATCACACGAAGAGAGAGTGACAgcTTGTTCTCGGGAGACAGATCAGTGTCTGTAGAGAGAAAACATTTGACCAGGTGGAGTCAGGCTTCTTCTTCGTCTTTGGACCTCTACACCAACAAGGCAGAAGACGCCAATTTTGGATCAATTATGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGTTTCTGGGGGAGGTGACGTGGCCACAAACAATCCGTGGGACACCTTCCAACGCTACCTCTGTCTGGACAACAGCCAGAGGGTGATCAAGACATCTTCAACCCCATTGGAGGAGACGACCCAAGGTTCCTTGCCTCAGActtcctccaatgggttttgagaaggatgtGAGTAGTGAGGAGTTGAGCAGAGATTAATTGGGACAGAGCTCATGTCATTGTTTTAGGTGAAAATGTATTCATTTtgcagcacaggaggttggtggtgctGTACCTTAATTGAGGAGAACGGGCTGGTGGTAATGATGAGTGGAATAgtatcaaatacattaaacatggtttccaggtgtttgatgccattccattcgctccgttccagccattattatgagctgttctcccctcagcagccttctgTGGTCACACTTACATATTTTGTTCTACCTGTGCTCTTTCtacagattttattttatttaactaggcaagtcagttgagaacaaattcttatttacaatgactgtctacaccggccaaacccagatgacgctgggccaattgtacgccgctctatgggactcccaatcacggccggttgtgatacagcctggattcgaaccagggtgtctgtggtGGCTCTTGCTTGCTGATATCATCTGATCTGATGAGACTCCCTGAGATGTGACTCCTGTATTACTGACAGTTTTCAATAAACCTTCCAATGACAAATTGAAATAATTTGAGATTCTGTAATTGAAAGACAATTGTAGTTCCCAATCAGATAATTACTATAAAACAAATCTGTTTTCCTCAGTGCAGTTGTAAACAACCATCATCGAGTCCATCCTCAGCTCCTCCATCACTGCAACGGATTGTCCGGTCTGCTGAGAGGGTCATTGGCTGCCACCTGCCCTCCTTCGAGGTCCTGCACGACTCCAAGGCAAGGAAGTGTGCAGGAAAGATCATTGCCAACCCCTTCCGTCCCCTGGCAAACGGTTCAGGTCAATCACGACCAAAACCTCACGCCACCTGAACAGTTTCTTCCCGTTGTGCCATGGCCCTCATCCAACCGGCAACCTGGTCTACGATGATCCTGTCATCCATGGACTTTGTACTCTGCGCTATTCATCCACAGACTATTCACTGCACTATCATCCCAGAACTGCACATTGCTCTTTGCACTCTCTTACATGCATAATTTATAATGTAGCTTATAGCGCACAcagtgtacatactgtatgtgaatatgTGGAGATTCTGCATCTATATTTTTTTTGGTCTGTAaattttgtttatctgtctgtATATTGTTTATTGTTGCAGCACCATTTCATTCCTGTACATGCAAATGTATTTGGCGAATAAAGCTGATATGTTA
>XR_002468998.2
CGGCGGCCATGACACTTTACCCGAATCGGATCATTGTTGTTTACATCACACGAAGAGAGAGTGACAgcTTGTTCTCGGGAGACAGATCAGTGTCTGTAGAGAGAAAACATTTGACCAGGTGGAGTCAGGCTTCTTCTTCGTCTTTGGACCTCTACACCAACAAGGCAGAAGACGCCAATTTTGGATCAATTATGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGTTTCTGGGGGAGGTGACGTGGCCACAAACAATCCGTGGGACACCTTCCAACGCTACCTCTGTCTGGACAACAGCCAGAGGGTGATCAAGACATCTTCAACCCCATTGGAGGAGACGACCCAAGGTTCCTTGCCTCAGActtcctccaatgggttttgagaaggatTGCAGTTGTAAACAACCATCATCGAGTCCATCCTCAGCTCCTCCATCACTGCAACGGATTGTCCGGTCTGCTGAGAGGGTCATTGGCTGCCACCTGCCCTCCTTCGAGGTCCTGCACGACTCCAAGGCAAGGAAGTGTGCAGGAAAGATCATTGCCAACCCCTTCCGTCCCCTGGCAAACGGTTCAGGTCAATCACGACCAAAACCTCACGCCACCTGAACAGTTTCTTCCCGTTGTGCCATGGCCCTCATCCAACCGGCAACCTGGTCTACGATGATCCTGTCATCCATGGACTTTGTACTCTGCGCTATTCATCCACAGACTATTCACTGCACTATCATCCCAGAACTGCACATTGCTCTTTGCACTCTCTTACATGCATAATTTATAATGTAGCTTATAGCGCACAcagtgtacatactgtatgtgaatatgTGGAGATTCTGCATCTATATTTTTTTTGGTCTGTAaattttgtttatctgtctgtATATTGTTTATTGTTGCAGCACCATTTCATTCCTGTACATGCAAATGTATTTGGCGAATAAAGCTGATATGTTA
>XR_002468999.2
CGGCGGCCATGACACTTTACCCGAATCGGATCATTGTTGTTTACATCACACGAAGAGAGAGTGACAgcTTGTTCTCGGGAGACAGATCAGTGTCTGTAGAGAGAAAACATTTGACCAGGTGGAGTCAGGCTTCTTCTTCGTCTTTGGACCTCTACACCAACAAGGCAGAAGACGCCAATTTTGGATCAATTATGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGTTTCTGGGGGAGGTGACGTGGCCACAAACAATCCGTGGGACACCTTCCAACGCTACCTCTGTCTGGACAACAGCCAGAGGGTGATCAAGACATCTTCAACCCCATTGGAGGAGACGACCCAAGGTTCCTTGCCTCAGActtcctccaatgggttttgagaaggatattttattttatttaactaggcaagtcagttgagaacaaattcttatttacaatgactgtctacaccggccaaacccagatgacgctgggccaattgtacgccgctctatgggactcccaatcacggccggttgtgatacagcctggattcgaaccagggtgtctgtggtGGCTCTTGCTTGCTGATATCATCTGATCTGATGAGACTCCCTGAGATGTGACTCCTGTATTACTGACAGTTTTCAATAAACCTTCCAATGACAAATTGAAATAATTTGAGATTCTGTAATTGAAAGACAATTGTAGTTCCCAATCAGATAATTACTATAAAACAAATCTGTTTTCCTCAGTGCAGTTGTAAACAACCATCATCGAGTCCATCCTCAGCTCCTCCATCACTGCAACGGATTGTCCGGTCTGCTGAGAGGGTCATTGGCTGCCACCTGCCCTCCTTCGAGGTCCTGCACGACTCCAAGGCAAGGAAGTGTGCAGGAAAGATCATTGCCAACCCCTTCCGTCCCCTGGCAAACGGTTCAGGTCAATCACGACCAAAACCTCACGCCACCTGAACAGTTTCTTCCCGTTGTGCCATGGCCCTCATCCAACCGGCAACCTGGTCTACGATGATCCTGTCATCCATGGACTTTGTACTCTGCGCTATTCATCCACAGACTATTCACTGCACTATCATCCCAGAACTGCACATTGCTCTTTGCACTCTCTTACATGCATAATTTATAATGTAGCTTATAGCGCACAcagtgtacatactgtatgtgaatatgTGGAGATTCTGCATCTATATTTTTTTTGGTCTGTAaattttgtttatctgtctgtATATTGTTTATTGTTGCAGCACCATTTCATTCCTGTACATGCAAATGTATTTGGCGAATAAAGCTGATATGTTA
>XR_002469000.2
CGGCGGCCATGACACTTTACCCGAATCGGATCATTGTTGTTTACATCACACGAAGAGAGAGTGACAgcTTGTTCTCGGGAGACAGATCAGTGTCTGTAGAGAGAAAACATTTGACCAGGTGGAGTCAGGCTTCTTCTTCGTCTTTGGACCTCTACACCAACAAGGCAGAAGACGCCAATTTTGGATCAATTATGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGTTTCTGGGGGAGGTGACGTGGCCACAAACAATCCGTGGGACACCTTCCAACGCTACCTCTGTCTGGACAACAGCCAGAGGGTGATCAAGACATCTTCAACCCCATTGGAGGAGACGACCCAAGGTTCCTTGCCTCAGActtcctccaatgggttttgagaaggatTTGTAAACAACCATCATCGAGTCCATCCTCAGCTCCTCCATCACTGCAACGGATTGTCCGGTCTGCTGAGAGGGTCATTGGCTGCCACCTGCCCTCCTTCGAGGTCCTGCACGACTCCAAGGCAAGGAAGTGTGCAGGAAAGATCATTGCCAACCCCTTCCGTCCCCTGGCAAACGGTTCAGGTCAATCACGACCAAAACCTCACGCCACCTGAACAGTTTCTTCCCGTTGTGCCATGGCCCTCATCCAACCGGCAACCTGGTCTACGATGATCCTGTCATCCATGGACTTTGTACTCTGCGCTATTCATCCACAGACTATTCACTGCACTATCATCCCAGAACTGCACATTGCTCTTTGCACTCTCTTACATGCATAATTTATAATGTAGCTTATAGCGCACAcagtgtacatactgtatgtgaatatgTGGAGATTCTGCATCTATATTTTTTTTGGTCTGTAaattttgtttatctgtctgtATATTGTTTATTGTTGCAGCACCATTTCATTCCTGTACATGCAAATGTATTTGGCGAATAAAGCTGATATGTTA
>TU1592619
TGACACTTTACCCGAATCGGATCATTGTTGTTTACATCACACGAAGAGAGAGTGACAgcTTGTTCTCGGGAGACAGATCAGTGTCTGTAGAGAGAAAACATTTGACCAGGTGGAGTCAGGCTTCTTCTTCGTCTTTGGACCTCTACACCAACAAGGCAGAAGACGCCAATTTTGGATCAATTATGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGTTTCTGGGGGAGGTGACGTGGCCACAAACAATCCGTGGGACACCTTCCAACGCTACCTCTGTCTGGACAACAGCCAGAGGGTGATCAAGACATCTTCAACCCCATTGGAGGAGACGACCCAAGGTTCCTTGCCTCAGActtcctccaatgggttttgagaaggatTGCAGTTGTAAACAACCATCATCGAGTCCATCCTCAGCTCCTCCATCACTGCAACGGATTGTCCGGTCTGCTGAGAGGGTCATTGGCTGCCACCTGCCCTCCTTCGAGGTCCTGCACGACTCCAAGGCAAGGAAGTGTGCAGGAAAGATCATTGCCAACCCCTTCCGTCCCCTGGCAAACGGTTCAGGTCAATCACGACCAAAACCTCACGCCACCTGAACAGTTTCTTCCCGTTGTGCCATGGCCCTCATCCAACCGGCAACCTGGTCTACGATGATCCTGTCATCCATGGACTTTGTACTCTGCGCTATTCATCCACAGACTATTCACTGCACTATCATCCCAGAACTGCACATTGCTCTTTGCACTCTCTTAC
>TU1592620
TGACACTTTACCCGAATCGGATCATTGTTGTTTACATCACACGAAGAGAGAGTGACAgcTTGTTCTCGGGAGACAGATCAGTGTCTGTAGAGAGAAAACATTTGACCAGGTGGAGTCAGGCTTCTTCTTCGTCTTTGGACCTCTACACCAACAAGGCAGAAGACGCCAATTTTGGATCAATTATGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGTTTCTGGGGGAGGTGACGTGGCCACAAACAATCCGTGGGACACCTTCCAACGCTACCTCTGTCTGGACAACAGCCAGAGGGTGATCAAGACATCTTCAACCCCATTGGAGGAGACGACCCAAGGTTCCTTGCCTCAGActtcctccaatgggttttgagaaggatTTGTAAACAACCATCATCGAGTCCATCCTCAGCTCCTCCATCACTGCAACGGATTGTCCGGTCTGCTGAGAGGGTCATTGGCTGCCACCTGCCCTCCTTCGAGGTCCTGCACGACTCCAAGGCAAGGAAGTGTGCAGGAAAGATCATTGCCAACCCCTTCCGTCCCCTGGCAAACGGTTCAGGTCAATCACGACCAAAACCTCACGCCACCTGAACAGTTTCTTCCCGTTGTGCCATGGCCCTCATCCAACCGGCAACCTGGTCTACGATGATCCTGTCATCCATGGACTTTGTACTCTGCGCTATTCATCCACAGACTATTCACTGCACTATCATCCCAGAACTGCACATTGCTCTTTGCACTCTCTTAC

Function

NR:

description
laminin subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566730.2 False 1597 mRNA 0.45 3 58886676 58896959
XR_002468998.2 False 960 mRNA 0.48 4 58886676 58896965
XR_002468999.2 False 1310 mRNA 0.46 4 58886676 58896965
XR_002469000.2 False 955 mRNA 0.47 4 58886676 58896965
TU1592619 False 763 lncRNA 0.51 4 58886864 58896956
TU1592620 True 758 lncRNA 0.51 4 58886864 58896956

Neighbor

gene id symbol gene type direction distance location
LOC118939563 cf105 coding downstream 9174 58871749 ~ 58877502 (-)
LOC110492419 LOC106566607 coding downstream 15885 58865549 ~ 58870791 (-)
LOC110491124 LOC106566606 coding downstream 39619 58836641 ~ 58847057 (-)
LOC110491123 LOC106566759 coding downstream 156337 58675738 ~ 58730339 (-)
LOC110492417 LOC106566761 coding downstream 218845 58422904 ~ 58667831 (-)
LOC118939564 NA coding upstream 122939 59019837 ~ 59051938 (-)
LOC110492425 LOC106566615 coding upstream 278969 59175934 ~ 59206144 (-)
plxnd1 LOC106566625 coding upstream 517047 59413470 ~ 59538798 (-)
LOC110492431 LOC106566626 coding upstream 644422 59541387 ~ 59640728 (-)
mrps25 mrps25 coding upstream 848411 59745376 ~ 59752581 (-)
G1394450 NA non-coding downstream 6819 58879387 ~ 58879857 (-)
G1394447 NA non-coding downstream 8397 58878052 ~ 58878279 (-)
G1394399 NA non-coding downstream 59516 58826797 ~ 58827160 (-)
G1394390 NA non-coding downstream 73675 58812747 ~ 58813001 (-)
G1394384 NA non-coding downstream 80152 58806312 ~ 58806524 (-)
G1394656 NA non-coding upstream 7360 58904325 ~ 58904573 (-)
G1394670 NA non-coding upstream 36076 58933041 ~ 58935197 (-)
G1394673 NA non-coding upstream 48978 58945943 ~ 58998411 (-)
G1394696 LOC106566609 non-coding upstream 85856 58982821 ~ 58988799 (-)
G1394341 NA other downstream 139377 58746870 ~ 58747299 (-)
G1394067 NA other downstream 458563 58424458 ~ 58428113 (-)
LOC110492410 LOC106566756 other downstream 580035 58302511 ~ 58315644 (-)
G1393997 LOC106566752 other downstream 608249 58274028 ~ 58278427 (-)
G1394768 LOC106566610 other upstream 214407 59111372 ~ 59112897 (-)
G1394978 LOC106566621 other upstream 457235 59354200 ~ 59356849 (-)
G1396467 NA other upstream 1657791 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 1764591 60661556 ~ 60672085 (-)
G1396543 NA other upstream 1796644 60693609 ~ 60694036 (-)

Expression


Co-expression Network