wdr46 (wdr46)


Basic Information

Item Value
gene id wdr46
gene name wdr46
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59788564 ~ 59795744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566761.2
ttggatgccaaccgcccttaaacctcatcgaagaagAAGTTAGCCGGTACGTATGGCGTAACAGTTCTTACCGGAAGTTAAAAAATACACAACATAGATGGCGGCGTCCAGCGAGACAATGTTGAAAAAACCACACGTGGGGAAAAAGAGAAAGCCTCCAACGAGATACTGGGAGGGCACAGAGGAAGAAGGGAAGAATGATGGGAAGAAACAGAAAGAAGGGGACAACAATGAACAGACTCCGCAACAAAATAACACTAGGACAAAGAAAGGAGGAAAGCGAGGAGGAAAGCGAGGAGGAGCAGGAAAAAAGGTCATATCAGGGAAATCAGATCCATTTCCAGGCTCAGCACCTGTCCCTGAAGAGAAGTTGAACAAATTCAAGAGGGGAGTAAAGGGAGAACTGccccctcGGCCACAGTACAAGCTCAGAGATGTGGTCATTCGATCAGAGGCTGCCTCAGACCTGGCCCAGAAGCAGAATGCACGATATGACCTTATGCTCCCAGAGGATGCTGGGTTCCTGGAGGGAGACGAAGATGAGGACACATGCACCATCTCACAGGATGACATCGTTGATGCTGTGGATATTACCGCAGGGGCAAAGTACTTTAGCCTGACCCTGTCTCAGTTTGGGCCTTACCGACTGGATTACAGCAAGACTGGGCGACACCTGCTGCTTGGTGGCAGGAGAGGTCATGTGACCTGCCTGGACTGGCAGTCCAAACAGTTGATGTGTGAGATGAATGTGATGGAGACAGTCAATGACGTAAAGTGGCTCCACAGTGAGGCTTTGTTTGCAGTGGCTCAGAAGAAGTGGCTGTATATCTATGACAACAAGGGCATCGAGCTCCACTGCATCCGCAAGTTCAACGATGTTCTCCGCATGCAGTTTCTCCCCTACCACTTCCTGCTGGCTACAGCAAGTGCGACAGGCTTCCTGCAGTACTTGGACGTGTCAGTGGGTAAGGAGGTGGTGGCCATCTGCACCAAGGCTGGCCGGTTGGATGTGATGGCCCATAACCCTCACAACGCCATCATCCACCTGGGCCACTCCAACGGCACTGTCACCCTCTGGACGCCAAACCAGAGAGAGCCACTTGTCAAGATGCTCTGCCACCAGGGGGGTGTGCGCTCTGTCGCCGTTGACAAGACTGGCACGTACATGGTGACCTCTGGCATGGACAAGAAGCTGAAGGTGTATGACATCAGAGCCTACCGGCCCCTGCAATCCTACTTCCTGCCTGCGGGAGCTTCCTGCCTGTCTCTGAGTCAGAGGGGTCTGCTGTCCGCCGCCACAGGAGACATAGTCCAGGTGTACAGAGATGTGTGGGGCATCCCAGTGACCAAGCCCTACATGGCCCACAGGGCAAAGGGCTCAGTGTGGGGTGTGCACTTCTGCCCCTTTGAGGACGTCCTAGGGGTGGGCCATGGAGAGGGCTTCACTAGCATGGTCGTACCAGGTGCTGGCGAGCCCAACTTTGACGGTCTGGATGCCAACCCGTACCGCAGTGCCAAGCAGAGGCAGGAGTGGGAGGTCAAAGCCCTACTAGAGAAGATCCAGCCAGAACTGATTGGCCTGGACCCTAGCCAGCTCAGCCAGGTGGACCACTCCACCTGGGAACAGAGACATGTGGACAGGGTCCAAGTACTGGGCTTTGACCCTCTGGCCAAGGAGAAGTTTACACCAAGGTTAAAGACCAAAGGTCGGAGTTCAAGTGGAAAAGTGGAAAAGCGCAAGAAGCAAGTGGCACATGAGGACCAGAGGGATGTGATCAGGCAAACAGTGGAAGACAGGATGAAGATagataaagagaggaaggagaaagagaagaaaaaggcAGCAGCAGCTGGTCAGAAGTCTGCTCTGGACAGATTCAGGAAGTAAGACCgggggacctgtgtgtgtgtgtagacgccTCTGTGGGAATGAGCGTTGACCTTTCAGATAAAGGGCACATTCTGAGTATGGGACATGTTCCTCCGAAGCCCAGCCAGCAGGCTCCAACAGCTACTGCAGACACACAGAACATGCATACCAAACTGTATGAGATGACTTGGAACTGCATCATAATCGGTGCCCTGAGCTCATTCTGTGTGACATTTATAAACTGTCAGTGTATTTCATatcaaaatctaattttattggtcacatacacacatttagcagatgttattgctgatGCAGTAAAATGCTGTCAGTGTATTTATGCCAGTTGGAAAGGCTGTCATTAAGTATTATCACCTTCTCTATTGTGACAATTATGATGGGTGTTTTCAACACAGTTTAATACTgtttttatattaaaaaaaacatgtcatttgtgaaataaaaaacatttgttcacaaaacAA

Function

symbol description
wdr46 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human WDR46 (WD repeat domain 46).

NR:

description
WD repeat-containing protein 46

GO: NA

KEGG:

id description
K14768 UTP7, WDR46; U3 small nucleolar RNA-associated protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566761.2 True 2355 mRNA 0.51 14 59788564 59795744

Neighbor

gene id symbol gene type direction distance location
nr2c2 nr2c2 coding downstream 13201 59761804 ~ 59775363 (-)
mrps25 mrps25 coding downstream 35983 59745376 ~ 59752581 (-)
LOC110492431 LOC106566626 coding downstream 147836 59541387 ~ 59640728 (-)
plxnd1 LOC106566625 coding downstream 249766 59413470 ~ 59538798 (-)
LOC110492425 LOC106566615 coding downstream 582420 59175934 ~ 59206144 (-)
LOC110492442 LOC106566634 coding upstream 66722 59862466 ~ 59867536 (-)
LOC110492455 LOC106566637 coding upstream 85388 59881132 ~ 59911772 (-)
ogg1 ogg1 coding upstream 120456 59916200 ~ 59925485 (-)
LOC110492460 LOC106566640 coding upstream 145961 59941705 ~ 59946884 (-)
LOC110492462 NA coding upstream 163417 59959161 ~ 59961425 (-)
G1395456 NA non-coding downstream 58286 59730042 ~ 59730278 (-)
G1395408 NA non-coding downstream 84083 59704264 ~ 59704481 (-)
G1395403 NA non-coding downstream 88833 59699479 ~ 59699731 (-)
G1395394 NA non-coding downstream 93911 59694061 ~ 59694653 (-)
G1395384 NA non-coding downstream 101664 59686466 ~ 59686900 (-)
G1395635 NA non-coding upstream 23089 59818833 ~ 59820458 (-)
G1395656 NA non-coding upstream 26119 59821863 ~ 59822163 (-)
G1395657 NA non-coding upstream 27886 59823630 ~ 59825026 (-)
G1395659 NA non-coding upstream 48558 59844302 ~ 59844778 (-)
G1395667 NA non-coding upstream 59184 59854928 ~ 59878726 (-)
G1394978 LOC106566621 other downstream 431715 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 675667 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 941548 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1041265 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1360451 58424458 ~ 58428113 (-)
G1396467 NA other upstream 759012 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 865812 60661556 ~ 60672085 (-)
G1396543 NA other upstream 897865 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 957361 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2938999 62734743 ~ 62735569 (-)

Expression


Co-expression Network