LOC110492462


Basic Information

Item Value
gene id LOC110492462
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59959161 ~ 59961425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469011.2
tggaaaccagcAAACACTGTCCAATGACGGACACAAGATGGCGTTATTTGATTTCACACTCGTCTTCTGGGCAAGACACGCCTCCGCGGAAGTGTTGCAATTGGCTGCTGGTCGTTAGGTTCGAGTCATGTGAGCGGTTTTGACTACGATGCCGAGCCATATTTTACCTCGAGCGCTTTGTTTTGACTAAGGTGAAGCGAAATAAAAGAGCAAAACTGCGACAGTTACGCCAGATTGTTTCCCGGGCAGCTGTTGAAGATGGCGAACTCAGATAGGATCAAGAAAAGGTATCAGCACTTCAAGAACGACCTGGAAAAGCTCTACTACCGCAGAGAATATTGTGCCCTGTGCCAGTGAGAGGAAACGGCACTAACAACTCGGCCAAGAGGATCTTAAAGGATAAAATTCTGCCTCGAACAAATGCTAATAACGTCCCCCAGCTCTTTGACTTCTTGACCACTCGTCTGTCAGCTTACTATAAAGCCAAAGCGGCTTAgacatgcgtgcatacattttatgtatggGTGGTCTATTCACAGATCAATGACATGCACTTTGAAGTGAAGCACTCGTCCTCACCTGGCCAGATCTACATAGTGGACATGTATATGGAGATGTGCAATTGTCCAATGGGATGAAAAGGTGATCCATGCAAGCACCAGACTGCCATTATCATCCATCACCAGTGCCAGAGCAGCAGCTTCTTGCCACTAACATCTGAAATGAGAGCAAAAATGTTGCATATAGGCACAAATTAAAATGTTGtaaatcaaaaatatatatattttttaatctgtTGAGATTTATTGTGTAAGACATCCCTTCAAAAATGTGATGCATGTTTGGCCGATGTGGCAGGGTGAACTGCGCTAAGAGATCCAGTGCCATCCAGTGAGCCTCCAGGCATACAGTGCCTCAAATCTCAGCGCAACCAAACATCGGTCGCACACAGGAAGGACAGGTTGGGTGGACGACAAATCCGTCTGCAGGACGAACCACAAAAACATCAGGGCCTGACCTGTTGAGATTACATACACTTTTTTACTGTAATCGTTGTTCAGGAGTTGTCTGTATTGTCAAACTTGTTTTCACAAGGTGAAAGACAACCCCGACTCCACAGAAAAGACCTGTTGCAACTGACCAATGCTACACATCTACCAGAAGCTCACAGAATGGTTTATTTAGGGACAACTGAGCCAGAGATTCCAGACCCTGGTGAAAGCAGAGTTTTGGTGTAAATATTTCACTTCACAGCCTTAAgtaattatttttattattaatgTAATATTGTACAGTTGATTGATCCAAATaatgaatgtacagtatgtatttaatTATTATTGTGTGATTATACAGTAGATTGATCCAATTACTATTTTGAATGTCAATGTTTTGTCAGAGTTTGATGGAATAAAATAATTTATTTTACATGCTAAA
>TU1593784
GCCGAGCCATATTTTACCTCGAGCGCTTTGTTTTGACTAAGGTGAAGCGAAATAAAAGAGCAAAACTGCGACAGTTACGCCAGATTGTTTCCCGGGCAGCTGTTGAAGATGGCGAACTCAGATAGGATCAAGAAAAGGTATCAGCACTTCAAGAACGACCTGGAAAAGCTCTACTACCGCAGAGAATATTGTGCCCTGTGCCAGTGAGAGGAAACGGCACTAACAACTCGGCCAAGAGGATCTTAAAGGATAAAATTCTGCCTCGAACAAATGCTAATAACGTCCCCCAGCTCTTTGACTTCTTGACCACTCGTCTGTCAGCTTACTATAAAGCCAAAGCGGCTTAgacatgcgtgcatacattttatgtatggGTGGTCTATTCACAGATCAATGACATGCACTTTGAAGTGAAGCACTCGTCCTCACCTGGCCAGATCTACATAGTGGACATGTATATGGAGATGTGCAATTGTCCAATGGGATGAAAAGGTGATCCATGCAAGCACCAGACTGCCATTATCATCCATCACCAGTGCCAGAGCAGCAGCTTCTTGCCACTAACATCTGAAATGAGAGCAAAAATGTTGCATATAGGCACAAATTAAAATGTTGtaaatcaaaaatatatatattttttaatctgtTGAGATTTATTGTGTAAGACATCCCTTCAAAAATGTGATGCATGTTTGGCCGATGTGGCAGGGTGAACTGCGCTAAGAGATCCAGTGCCATCCAGTGAGCCTCCAGGCATACAGTGCCTCAAATCTCAGCGCAACCAAACATCGGTCGCACACAGGAAGGACAGGTTGGGTGGACGACAAATCCGTCTGCAGGACGAACCACAAAAACATCAGGGCCTGACCTGTTGAGATTACATACACTTTTTTACTGTAATCGTTGTTCAGGAGTTGTCTGTATTGTCAAACTTGTTTTCACAAGGTGAAAGACAACCCCGACTCCACAGAAAAGACCTGTTGCAACTGACCAATGCTACACATCTACCAGAAGCTCACAGAATGGTTTATTTAGGGACAACTGAGCCAGAGATTCCAGACCCTGGTGAAAGCAGAGTTTTGGTGTAAATATTTCACTTCACAGCCTTAAgtaattatttttattattaatgTAATATTGTACAGTTGATTGATCCAAATaatgaatgtacagtatgtatttaatTATTATTGTGTGATTATACAGTAGATTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107573782

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469011.2 False 1437 mRNA 0.42 2 59959161 59961425
TU1593784 True 1214 lncRNA 0.42 2 59959234 59961275

Neighbor

gene id symbol gene type direction distance location
LOC110492460 LOC106566640 coding downstream 12277 59941705 ~ 59946884 (-)
ogg1 ogg1 coding downstream 33676 59916200 ~ 59925485 (-)
LOC110492455 LOC106566637 coding downstream 47389 59881132 ~ 59911772 (-)
LOC110492442 LOC106566634 coding downstream 91625 59862466 ~ 59867536 (-)
wdr46 wdr46 coding downstream 163417 59788564 ~ 59795744 (-)
LOC110491132 LOC106566643 coding upstream 21855 59983280 ~ 60049509 (-)
LOC110492464 NA coding upstream 172827 60134252 ~ 60137371 (-)
LOC110491133 LOC106566645 coding upstream 177704 60139129 ~ 60343362 (-)
LOC110491135 NA coding upstream 461920 60423345 ~ 60424658 (-)
LOC110492466 LOC106566648 coding upstream 469908 60431333 ~ 60455209 (-)
G1395693 LOC106566639 non-coding downstream 22269 59936542 ~ 59936892 (-)
G1395691 NA non-coding downstream 26024 59932872 ~ 59933137 (-)
G1395638 qars non-coding downstream 29964 59903524 ~ 59929197 (-)
G1395667 NA non-coding downstream 80435 59854928 ~ 59878726 (-)
G1395659 NA non-coding downstream 114383 59844302 ~ 59844778 (-)
G1395699 NA non-coding upstream 198 59961623 ~ 59961886 (-)
G1395751 NA non-coding upstream 94759 60056184 ~ 60056538 (-)
G1395977 NA non-coding upstream 110995 60072420 ~ 60132053 (-)
G1396039 NA non-coding upstream 217440 60178865 ~ 60179338 (-)
G1394978 LOC106566621 other downstream 602312 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 846264 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 1112145 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1211862 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1531048 58424458 ~ 58428113 (-)
G1396467 NA other upstream 593331 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 700131 60661556 ~ 60672085 (-)
G1396543 NA other upstream 732184 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 791680 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2773318 62734743 ~ 62735569 (-)

Expression


Co-expression Network