LOC110491132 (LOC106566643)


Basic Information

Item Value
gene id LOC110491132
gene name LOC106566643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59983280 ~ 60049509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947457.1
agaggtGGGAGTAGCTTTCTATCAGCCTATCTCTCAGTGAGAGCCTGCTTGCCTAACTCTCATTAGCGCTCACAGAAAGTTCATAACACACATGCCATGCATGTGAAGGAAGCCAACACAACCTGAATGTGCTGATTTGTTGTAGTATTCTTCTCCCTTTACCTCTGAGCAGCCTTGGGGAGAGACACCACGCCTGgaggagaaataaagagagaaagagagagaataacagagtgagggagggggactTGAGCTGGTGACAGAGCTTGCAGGCTCCAGTCGTGCCTCTCATctgtctactgctgctgctgcgttgcagtcagagtcagagccagggGCTGAGCTGAGCTGGTGTTTTTCTCAGtgatctacagacagacagagcagtgagCTGTAAGCTGTGAACAGTACTGTACCTCTGCCACACCACTGCCATGACAACACTGTGAGTGAAAAGAGAGAGTTCCTCCTGTCCACCACCTCTCTAAAGCTACAGCTGCGGAACCCTGCAGCCACAGACAGATAATTACAGAGTAAGACCTGTGTCTACTCTAAGTGTCCCAGTGAGGAGCATGTGGTGAGGGCCATGTCTCTGGAGATGGAGAAGAGTGTCACTAAGTTGATGTATGACTTCCAGGGGAACTCTACCTCTGACGACGACTCAGGCTGCGCACTGGAGGAATACGCCTGGGCGCCCCCTGGTCTCAGCCCTGAGCAGGTGCATCAGTACTACGGTTCTCTACCTGAGGACAGGGTGCCGTATGTGAACAGCCCAGGAGAGAAGCACCGCATCAAACAGCTGATTCACCAGCTGCCCCCGCACGACAACGAGGTCCGATACTGCAACACACTGGACGACGAGGAGAAGAGGGAGCTCAAGCTCTTCAGTaaccagagaaagagggacaacctGGGAAGAGGCAATGTCCGCCCCTTCCCCTTGTCCATCAGTGGGGCCATCTGTGAACAGtgtgggGGCCAGATAAATGGACGGGACATTGTGGTGTTTGCATCGCGGGCAGGCCACGGCCTGGTGTGGCACCCTCACTGCTTCGTGTGCTGCATGTGTGAGGAGCTCCTGGTGGACCTCATCTACTTCCACCAAGAAGGGAAGATCTACTGCGGCCGGCACCATGCCGAGAGGCTCAAACCCCGCTGCTGTGCCTGTGATGAGATTATCTTTGCTGATGAGTGTACGGAGGCGGAGGGCAGGCATTGGCACATGAAACACTTCTGCTGCTATGAGTGTGAGGCTCCGCTGGGCGGCCAGCGCTACATCATGAAGGATGGACACCCACACTGTTGCAACTGCTTTGAGTCCCTCTACGCAGAGTACTGTGACGCCTGCGGTGAACACATAGGCATTGACCAGGGCCAAATGACATATGACGGGCAGCACTGGCATGCCACAGAGGAGTGTTTCTGCTGTGCCCGCTGTAAGCGCTCCCTCCTGGGGCGCCCCTTTCTGCCCAAACAGGGACAGATCTACTGCTCACGCTCCTGCAGCGCCGGACAGGACCCAGATGAATCTGACTCCTCGGACTCGGCCTTCCAGAGTGCCCGCTCCCGTGAGTCCCGCCACAGCACCAAGATCATAAAACAGGATCACCGAAATACCGAGAAGGAGCGTCGCCAGCCAGCGCCCATGCCTGACCGTCTGTCTGTCGAGGTGGACCCCCTGTCTATCCATATGGACCGTCTGAGCCTTGGCTCCATCCAGACACCCAGCCGAACCCCCAGTCGCACCCCAAGCCGCACCCCTAGTCTCAACCAGGTGTGGATGAGCCGGGACGAACCTTACCCCCCAGCATACGAGGCAGCCTATGAGGGCTCCCCGCGGGACCCCTCTCCAACCCCCACGCCCCTGCTCCTGGGCCCGTGTAACCCCAGGCAGGGCTACAGCCCCAGCCCCAAACTCCACCCCCCAACCCAGAGCTCTGGCAACCCAGGGAAGAGGCCTGAGTCCTGGGTTAAAGAGCAGGGCAACACCAAGAGGACGCCCATGGCGGCATTGAGGGGCCAATCCTTCCAGGACAACTGGATCCACCACAGCCAGGACGAGTTCCGGCCACCCAAGCTGAGAACCCAGATGAGTTTTAACGAGGTGTCCAGCCAAGGCCAGGGCTTCTCAGACAAGAGGAGCATCAGCATGCATGGCTTCCAGAGAGACAGCAGGCCCCCCCTGACCAGGAACGCCATGAGCAACGGCATTAGCTTCACAGAGCCCCTCACCCCTCTGGAACAAACCCCTCGAGGATCCATGGAGTCTCTGGCCCTGTCCAACGCTACAGGTAACTCTCTGGATGGAGTCAATAAGCGTCAGGAGCACCTGTCCAGGTTCTCCATGCCAGACCTTAGTAAGGATTCTGGGATGAATGTGTCTGAGAAGAGCAACATGGGGACACTGGGTTCCCCTGTCCAATTCCGCAGCTCTGAGTCCCTGACCTCCTCTCGGCTGTACAGGAACCTGAATGCGCCCGTGCAGGTGGGGTACCCCCTGGGGTACTGGGACGCCCCCCAGCCTCTGGCCTTTGAGGGTAAAGGTCGTGTGGCCCTGATGGGGAGTAGTGGCAACCTCCGCATGCCCCCCATGATTGAGAGGACACCTCGTCGTCGGCCCAATGAGCCAGAGCCCATACggcaacaacaactaccaacGCAACCACGGCGACGGAAACACCGCGGCAACGGTAATGATGGAAACGGCAACCACCGCAACAGCGGTCGCCACCACCGGCGCTCTCGACGCTCACGCTCTGACAACGCCCTCCACCTGGCGGCCGACCGGGCAAATCACATGATGGAACCACCACACCGTCGCATTCAGGAGGACTACGACCGTTTCCCCGCCGGCCGCACCGCCCGGGACCTGTTTGGGGTTGGGGGCATGGGTGGTTACAGACAACAGCCTTATAGACCCTGCCCTCGCACCACCTCAGATCTCACCCTGCACAATgcagtggggggtggggggattcAGCCACTGGGCCTGGGGGGTCCATACTGTGGTGGAGAGGGGTACGGGGAGGGGGCAGACCCCTGGTGCTCCAGCTGCTCCTCGTCCTCTGAGTCTGAAGAAGATGAGGGGTACTTCCTGGGTGAGCCCATCCCCAGACCTATCCAGCTACGCTACCTCAACAATGAGGAGCTGCGCCACAGATACAGCCCTACAGgagtgggagggatggggggcCACCATGGACCCATACATGGACCCCTACATGGAGGAAACCACGGGCAGCTGCACGGACAGCTACAAATGCGCCAGAGGAGGAAGAGCAAGAACTGCACCATCTCatagagagtggaagggaaaaagagagagaaagggagtgggagggagacagagaaaaattaagtgagagagagagtatgtgaaagagtgtatgtgtatgtgtcagagagagagagagacatatatattTGATGTGTGTAAATTATACAACTGGCTCTgtgcgcgggggggggggggggggggggggagtgttgtTTGTGTACACCTACACAGTATGATCTAATCAGAACAGGAAGCCTGCAATGGACCGGCTTCTTACACAACTGCAATGTTTACAATGGTGACTAACGATTGGCACGAGCATCACATTTGTATTGTTAACTGTTTATTATATACAACAAGAAAGGTTACAGCAAATTATAAactgtgcgtgcgcgtgcgcatGTGAGAGATACATCTAGAGATACATCCAAGAAATACTGGACTTATTCATAAAATGTACTGCCATAGTAAAACTACTAGCTGTTTTTTCAAACCAGTTAAAACATTTATAGAAATTGGATTCATGCATGCATAATATTCAGTACGTCAACAAGGCATAAAATAATACTGCAAATAGTTGCAATTCATGATGGAATTTAGCAACTATTTAGCATTGTTTTCCATCTTGAAACAGACAGGGGATAAATTCACCATGTCTGTAAAGTTTAATGAATGCTCCCAAATGACTCAGTTAAAAGAAGTAATGGCACACACCAACAAGAGCTCTACGGGCCGAAGTGCTCACGTATTTTATGTACCTTACTGGACCTTGGAAAACCACCTGAGTGGACCTCTCATACCAGTGATCCACCAATGACTTATAATCAGTCCATCAATTACTAAGGAGAACCAAAAACTGCCTGGCACACACTGCAGCCCTCCAAACCAAGTCAACTGGCTGCGTGATTGTGGGAAATGTGTGCTAGATTCTGTACAGTGTTGTCTTTTACCTCAGTGGAAACCAAGAGCTGCTGAATGTACAGTATCGTTGGCTAGCCAGCCATGTTATCACCCTGTATAAGTAGCCTGTTGAACCTAaccctgtgctgtgtgttttacATAGCCTCCTGCCCTCGCTCCATCCATGCTTACCAAGGACAGCTCTAGCCTCTGCTCCTTGACCATTCAGGCACAGCAGCGTCTCATATGGTCCCGTGTTCTCCCGCAACAAGCTTTGTTTTTCAGAGTTAGAATACCACTACTAGATTAATAATAAtgaaatataataataacaataataacaataataatacctGTTAAATGTATATAACAGTAAAATACATGTTATTTAAGTTATGGATGTAGTAATGTAAATGTTCTGTACATAATGACcctacatatttatatatattttgtaactACAGAATCATTATTTGTATAACATGATGTAGGGATAGAAAAGTCTTGCATGTTTATTTGTTGATGTTGTGTCATATTGGAATTAAAGTGGATTTTAATGAA
>XM_036947459.1
agaggtGGGAGTAGCTTTCTATCAGCCTATCTCTCAGTGAGAGCCTGCTTGCCTAACTCTCATTAGCGCTCACAGAAAGTTCATAACACACATGCCATGCATGTGAAGGAAGCCAACACAACCTGAATGTGCTGATTTGTTGTAGTATTCTTCTCCCTTTACCTCTGAGCAGCCTTGGGGAGAGACACCACGCCTGgaggagaaataaagagagaaagagagagaataacagagtgagggagggggactTGAGCTGGTGACAGAGCTTGCAGGCTCCAGTCGTGCCTCTCATctgtctactgctgctgctgcgttgcagtcagagtcagagccagggGCTGAGCTGAGCTGGTGTTTTTCTCAGtgatctacagacagacagagcagtgagCTGTAAGCTGTGAACAGTACTGTACCTCTGCCACACCACTGCCATGACAACACTGTGAGTGAAAAGAGAGAGTTCCTCCTGTCCACCACCTCTCTAAAGCTACAGCTGCGGAACCCTGCAGCCACAGACAGATAATTACAGAGACCTGTGTCTACTCTAAGTGTCCCAGTGAGGAGCATGTGGTGAGGGCCATGTCTCTGGAGATGGAGAAGAGTGTCACTAAGTTGATGTATGACTTCCAGGGGAACTCTACCTCTGACGACGACTCAGGCTGCGCACTGGAGGAATACGCCTGGGCGCCCCCTGGTCTCAGCCCTGAGCAGGTGCATCAGTACTACGGTTCTCTACCTGAGGACAGGGTGCCGTATGTGAACAGCCCAGGAGAGAAGCACCGCATCAAACAGCTGATTCACCAGCTGCCCCCGCACGACAACGAGGTCCGATACTGCAACACACTGGACGACGAGGAGAAGAGGGAGCTCAAGCTCTTCAGTaaccagagaaagagggacaacctGGGAAGAGGCAATGTCCGCCCCTTCCCCTTGTCCATCAGTGGGGCCATCTGTGAACAGtgtgggGGCCAGATAAATGGACGGGACATTGTGGTGTTTGCATCGCGGGCAGGCCACGGCCTGGTGTGGCACCCTCACTGCTTCGTGTGCTGCATGTGTGAGGAGCTCCTGGTGGACCTCATCTACTTCCACCAAGAAGGGAAGATCTACTGCGGCCGGCACCATGCCGAGAGGCTCAAACCCCGCTGCTGTGCCTGTGATGAGATTATCTTTGCTGATGAGTGTACGGAGGCGGAGGGCAGGCATTGGCACATGAAACACTTCTGCTGCTATGAGTGTGAGGCTCCGCTGGGCGGCCAGCGCTACATCATGAAGGATGGACACCCACACTGTTGCAACTGCTTTGAGTCCCTCTACGCAGAGTACTGTGACGCCTGCGGTGAACACATAGGCATTGACCAGGGCCAAATGACATATGACGGGCAGCACTGGCATGCCACAGAGGAGTGTTTCTGCTGTGCCCGCTGTAAGCGCTCCCTCCTGGGGCGCCCCTTTCTGCCCAAACAGGGACAGATCTACTGCTCACGCTCCTGCAGCGCCGGACAGGACCCAGATGAATCTGACTCCTCGGACTCGGCCTTCCAGAGTGCCCGCTCCCGTGAGTCCCGCCACAGCACCAAGATCATAAAACAGGATCACCGAAATACCGAGAAGGAGCGTCGCCAGCCAGCGCCCATGCCTGACCGTCTGTCTGTCGAGGTGGACCCCCTGTCTATCCATATGGACCGTCTGAGCCTTGGCTCCATCCAGACACCCAGCCGAACCCCCAGTCGCACCCCAAGCCGCACCCCTAGTCTCAACCAGGTGTGGATGAGCCGGGACGAACCTTACCCCCCAGCATACGAGGCAGCCTATGAGGGCTCCCCGCGGGACCCCTCTCCAACCCCCACGCCCCTGCTCCTGGGCCCGTGTAACCCCAGGCAGGGCTACAGCCCCAGCCCCAAACTCCACCCCCCAACCCAGAGCTCTGGCAACCCAGGGAAGAGGCCTGAGTCCTGGGTTAAAGAGCAGGGCAACACCAAGAGGACGCCCATGGCGGCATTGAGGGGCCAATCCTTCCAGGACAACTGGATCCACCACAGCCAGGACGAGTTCCGGCCACCCAAGCTGAGAACCCAGATGAGTTTTAACGAGGTGTCCAGCCAAGGCCAGGGCTTCTCAGACAAGAGGAGCATCAGCATGCATGGCTTCCAGAGAGACAGCAGGCCCCCCCTGACCAGGAACGCCATGAGCAACGGCATTAGCTTCACAGAGCCCCTCACCCCTCTGGAACAAACCCCTCGAGGATCCATGGAGTCTCTGGCCCTGTCCAACGCTACAGGTAACTCTCTGGATGGAGTCAATAAGCGTCAGGAGCACCTGTCCAGGTTCTCCATGCCAGACCTTAGTAAGGATTCTGGGATGAATGTGTCTGAGAAGAGCAACATGGGGACACTGGGTTCCCCTGTCCAATTCCGCAGCTCTGAGTCCCTGACCTCCTCTCGGCTGTACAGGAACCTGAATGCGCCCGTGCAGGTGGGGTACCCCCTGGGGTACTGGGACGCCCCCCAGCCTCTGGCCTTTGAGGGTAAAGGTCGTGTGGCCCTGATGGGGAGTAGTGGCAACCTCCGCATGCCCCCCATGATTGAGAGGACACCTCGTCGTCGGCCCAATGAGCCAGAGCCCATACggcaacaacaactaccaacGCAACCACGGCGACGGAAACACCGCGGCAACGGTAATGATGGAAACGGCAACCACCGCAACAGCGGTCGCCACCACCGGCGCTCTCGACGCTCACGCTCTGACAACGCCCTCCACCTGGCGGCCGACCGGGCAAATCACATGATGGAACCACCACACCGTCGCATTCAGGAGGACTACGACCGTTTCCCCGCCGGCCGCACCGCCCGGGACCTGTTTGGGGTTGGGGGCATGGGTGGTTACAGACAACAGCCTTATAGACCCTGCCCTCGCACCACCTCAGATCTCACCCTGCACAATgcagtggggggtggggggattcAGCCACTGGGCCTGGGGGGTCCATACTGTGGTGGAGAGGGGTACGGGGAGGGGGCAGACCCCTGGTGCTCCAGCTGCTCCTCGTCCTCTGAGTCTGAAGAAGATGAGGGGTACTTCCTGGGTGAGCCCATCCCCAGACCTATCCAGCTACGCTACCTCAACAATGAGGAGCTGCGCCACAGATACAGCCCTACAGgagtgggagggatggggggcCACCATGGACCCATACATGGACCCCTACATGGAGGAAACCACGGGCAGCTGCACGGACAGCTACAAATGCGCCAGAGGAGGAAGAGCAAGAACTGCACCATCTCatagagagtggaagggaaaaagagagagaaagggagtgggagggagacagagaaaaattaagtgagagagagagtatgtgaaagagtgtatgtgtatgtgtcagagagagagagagacatatatattTGATGTGTGTAAATTATACAACTGGCTCTgtgcgcgggggggggggggggggggggggagtgttgtTTGTGTACACCTACACAGTATGATCTAATCAGAACAGGAAGCCTGCAATGGACCGGCTTCTTACACAACTGCAATGTTTACAATGGTGACTAACGATTGGCACGAGCATCACATTTGTATTGTTAACTGTTTATTATATACAACAAGAAAGGTTACAGCAAATTATAAactgtgcgtgcgcgtgcgcatGTGAGAGATACATCTAGAGATACATCCAAGAAATACTGGACTTATTCATAAAATGTACTGCCATAGTAAAACTACTAGCTGTTTTTTCAAACCAGTTAAAACATTTATAGAAATTGGATTCATGCATGCATAATATTCAGTACGTCAACAAGGCATAAAATAATACTGCAAATAGTTGCAATTCATGATGGAATTTAGCAACTATTTAGCATTGTTTTCCATCTTGAAACAGACAGGGGATAAATTCACCATGTCTGTAAAGTTTAATGAATGCTCCCAAATGACTCAGTTAAAAGAAGTAATGGCACACACCAACAAGAGCTCTACGGGCCGAAGTGCTCACGTATTTTATGTACCTTACTGGACCTTGGAAAACCACCTGAGTGGACCTCTCATACCAGTGATCCACCAATGACTTATAATCAGTCCATCAATTACTAAGGAGAACCAAAAACTGCCTGGCACACACTGCAGCCCTCCAAACCAAGTCAACTGGCTGCGTGATTGTGGGAAATGTGTGCTAGATTCTGTACAGTGTTGTCTTTTACCTCAGTGGAAACCAAGAGCTGCTGAATGTACAGTATCGTTGGCTAGCCAGCCATGTTATCACCCTGTATAAGTAGCCTGTTGAACCTAaccctgtgctgtgtgttttacATAGCCTCCTGCCCTCGCTCCATCCATGCTTACCAAGGACAGCTCTAGCCTCTGCTCCTTGACCATTCAGGCACAGCAGCGTCTCATATGGTCCCGTGTTCTCCCGCAACAAGCTTTGTTTTTCAGAGTTAGAATACCACTACTAGATTAATAATAAtgaaatataataataacaataataacaataataatacctGTTAAATGTATATAACAGTAAAATACATGTTATTTAAGTTATGGATGTAGTAATGTAAATGTTCTGTACATAATGACcctacatatttatatatattttgtaactACAGAATCATTATTTGTATAACATGATGTAGGGATAGAAAAGTCTTGCATGTTTATTTGTTGATGTTGTGTCATATTGGAATTAAAGTGGATTTTAATGAA

Function

NR:

description
prickle-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947457.1 False 4738 mRNA 0.53 9 59983280 60049509
XM_036947459.1 True 4734 mRNA 0.53 9 59983280 60049509

Neighbor

gene id symbol gene type direction distance location
LOC110492462 NA coding downstream 21855 59959161 ~ 59961425 (-)
LOC110492460 LOC106566640 coding downstream 36396 59941705 ~ 59946884 (-)
ogg1 ogg1 coding downstream 57795 59916200 ~ 59925485 (-)
LOC110492455 LOC106566637 coding downstream 71508 59881132 ~ 59911772 (-)
LOC110492442 LOC106566634 coding downstream 115744 59862466 ~ 59867536 (-)
LOC110492464 NA coding upstream 84743 60134252 ~ 60137371 (-)
LOC110491133 LOC106566645 coding upstream 89620 60139129 ~ 60343362 (-)
LOC110491135 NA coding upstream 373836 60423345 ~ 60424658 (-)
LOC110492466 LOC106566648 coding upstream 381824 60431333 ~ 60455209 (-)
pabpc1l LOC106566651 coding upstream 596203 60645712 ~ 60652804 (-)
G1395699 NA non-coding downstream 21394 59961623 ~ 59961886 (-)
G1395693 LOC106566639 non-coding downstream 46388 59936542 ~ 59936892 (-)
G1395691 NA non-coding downstream 50143 59932872 ~ 59933137 (-)
G1395638 qars non-coding downstream 54083 59903524 ~ 59929197 (-)
G1395751 NA non-coding upstream 6675 60056184 ~ 60056538 (-)
G1395977 NA non-coding upstream 22911 60072420 ~ 60132053 (-)
G1396039 NA non-coding upstream 129356 60178865 ~ 60179338 (-)
G1396124 NA non-coding upstream 254620 60304129 ~ 60304835 (-)
G1394978 LOC106566621 other downstream 626431 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 870383 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 1136264 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1235981 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1555167 58424458 ~ 58428113 (-)
G1396467 NA other upstream 505247 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 612047 60661556 ~ 60672085 (-)
G1396543 NA other upstream 644100 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 703596 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2685234 62734743 ~ 62735569 (-)

Expression


Co-expression Network