LOC110492464


Basic Information

Item Value
gene id LOC110492464
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60134252 ~ 60137371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469012.2
tttgtaagtagcaAAACCTGTAAAATCGTCGGTGTATCAAattcttgttctccccactgtaagtggAGCCTCACTGTTAAATGTATCTGAACCTAAATTTCTTTGTAATAGCGGAATAATTGAAAGTGTGAAATTATTGTTACACAATCCGTGGGGATAGGTTTAAAGGAATTTATCCACTACTCCCAAACGAACTAGTAGCTCCAGGAGATAATTCTTCCCCACCACTGAGTAGAATGTATCAAGAACTAGGAGATATGTGGAATCATGCCAAGACTCAATCAACACCTCTCTATCCTAGAGTTACCATGGCAAAGGACCTCATGGCAGCTCAATAAAAGAAAGCACAGGGAGAAATGGATAACACTGTTGAGGTTATCAGACGAGGTCGTAATGATGAAGATAAAGAGCAAAGTCTAAGTGGTAATCACACTGAATGGAGAGAACTGAAGAGAGGAAGAAGAACTGATACGACTGAGAACAGAATATGAAGGAAAAATGAAAACTGAACAAACAGGAGACAgtgggaggagaagaagagagaggagagagaatgtgaaTAATTCACTGAACACGAGAGTGGAACTGCCCTTCACCCATTTCAGACAAGCACTCTACCGACAGTTAAGGGAATGTTTCCCACCACCAGAGATGTTGCAAGACCGGGTGAACTGCTCTTCACTGAAGATGATGATATCCTCGACTAGATGGATAAGATGAAGACAGAATGGCAAGGAGAGACAACTGAGATATTTGAAGGCCCTAATAAGGAGGACCGCATTAGACACTACTGCAGAGCCTGGAAAAAGTTGAAGACTGAGGAAAGAGCAAGAAAGGCTAGACTCGTCGCGCAGCTTAAGAAGGCCCAGCTAGCTCAGCCGGACAAAGGAAAAACCAGCAACCTGATGGTGGCTGAACCTCCTGCCACCCAGCAGCAACAACCACCACAGCCTCTTCCACCACCTCCTTCCCAGTTTCTTCAAGCACCTGCAGCTCAGTTCCCTCCTCAACCATATGGGAACCCACAACCATACCTACCAACACTGAGACAACTGCTGGTGTGCTGGAATTGCGGAATGACAGGTCATATGAGAAACATGTGCCCTCACCAACCACAGCATCAGTCACCCtggcagcagagaggaagaggtcaaTGGAGAGGGAATGATGGCAGGTGGAACTTCCAATGGTGCCTTGCCTGTCTTGGATAGGGGTTTGGAAAGGTAGGGACTTTGTTAACGCGTCTGGGACCCCTATTAAAAACCGTATGCAGATTGAAGCCCTGCTTGAAGCCATGTTGCTTTCAGCGCAGTTGGCTATTCTTAAGGTCCGAGCCCACACAGGCAACACTGACAGCATTATTATAGGTATTGCAGCTGCTGAAGCTGCTGCTAAGAATGCTGCTTCCCGCCGCCATACTCATGCTGTTCTGCTTGCCTCCCGGTGTACGTCTGAAATCACTGATCTGGACTAACACCAGGCTGCGGATGCACTTAATCACCCTTTGTGGGAGTCTAGAGTCTGCTCCAGAGACCCTGGTGGCCCGTGGAGACAATCACTCTCTGGCAGAACagttctgcctctgcctctcgtCTCCTGTGTGTGTCGCTTGGTCCACGGGGTGGGAGATGGTAAGACTAATATCTGACACCTGGTTTTGTCCAAATCTGATTTGAAATTTGCAAAACACATGTGTATAAATGTACTACATGTATGCAATACAACATTGGTAAGGGTGCCCCCCTGAAACCAGGGAAATTTCCAGCGCCAGTAATGGGGTTACTGAGATGGCTAATTAAACCATAAAAGGGGGGCTTGCCAAAGCATGCCACTCCACAGGGAAATCATAGGTAGAATGTCTCCCCTTAGTCTTGATGAAAATGCGCAATAGTATAAACCGCTGAACAGGGCGTAGCCCACATGTGCACACCCCAATGACTCCAAAACTGACGGACCTGACTGCGCTGGATGATGATTTGAGTAAATATATGAAGGAACTAACCCATGCTGTTAGGTATTTGTATTCCCAATACAGGAAAGCCCAGGACGTTCCAGAACAGGGCGACCTAGACAGCCCGCCTGTTGACGTTGGAAAATGGATCAAGCtgaagggcatagacACTATCAGAAGGCGTCTACGTTCAGACTCCTCCTGTCTGGATCCCACCGTGGTTATctggttttctgagaacacaAGGCTGCCACAGACCTGATTGAAACCAGCCACCTGTCAGAAGATGCTTACACTCGTTCACATTGTTATGACTCTATACTTGTGATGAAAGGTCAAGTTTCAGTCAAACCCAATTCTGAGTTTTTACTTGCTGATAAGATGGTTCTCGCTGTCAGGGGGAGGTtagatttattaaaatgttgttgcTAGGGAAAGTTACGTAAGGGGGATTGGGGAGGCTATATGAGTTACAGGATGTCTTAGACATTGTGCAGAACTTGGGGAGAACTATCATATGCTGTTAAACTGTACTCTGTATCAACCTCTGCCTACAATTGTATTACTAAAATAAGTATTTTAATACTTAAA

Function

NR:

description
uncharacterized protein LOC109977106 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469012.2 True 2542 mRNA 0.46 2 60134252 60137371

Neighbor

gene id symbol gene type direction distance location
LOC110491132 LOC106566643 coding downstream 84743 59983280 ~ 60049509 (-)
LOC110492462 NA coding downstream 172827 59959161 ~ 59961425 (-)
LOC110492460 LOC106566640 coding downstream 187368 59941705 ~ 59946884 (-)
ogg1 ogg1 coding downstream 208767 59916200 ~ 59925485 (-)
LOC110492455 LOC106566637 coding downstream 222480 59881132 ~ 59911772 (-)
LOC110491133 LOC106566645 coding upstream 1758 60139129 ~ 60343362 (-)
LOC110491135 NA coding upstream 285974 60423345 ~ 60424658 (-)
LOC110492466 LOC106566648 coding upstream 293962 60431333 ~ 60455209 (-)
pabpc1l LOC106566651 coding upstream 508341 60645712 ~ 60652804 (-)
LOC100136193 LOC100136193 coding upstream 516257 60653628 ~ 60657344 (-)
G1395977 NA non-coding downstream 2199 60072420 ~ 60132053 (-)
G1395751 NA non-coding downstream 77714 60056184 ~ 60056538 (-)
G1395699 NA non-coding downstream 172366 59961623 ~ 59961886 (-)
G1395693 LOC106566639 non-coding downstream 197360 59936542 ~ 59936892 (-)
G1396039 NA non-coding upstream 41494 60178865 ~ 60179338 (-)
G1396124 NA non-coding upstream 166758 60304129 ~ 60304835 (-)
G1396370 NA non-coding upstream 263097 60400468 ~ 60400752 (-)
G1396379 NA non-coding upstream 280814 60418185 ~ 60419079 (-)
G1394978 LOC106566621 other downstream 777403 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 1021355 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 1287236 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1386953 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1706139 58424458 ~ 58428113 (-)
G1396467 NA other upstream 417385 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 524185 60661556 ~ 60672085 (-)
G1396543 NA other upstream 556238 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 615734 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2597372 62734743 ~ 62735569 (-)

Expression


Co-expression Network