pabpc1l (LOC106566651)


Basic Information

Item Value
gene id pabpc1l
gene name LOC106566651
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60645712 ~ 60652804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566818.2
CATCATCAATAAGTTACTTATTTGTAGATCAGTTTACGCATTCATTATGGTTTTGATCCTCTTGAACACAGCCATTGTGAAGCAGCCGATTGGAGACCTAACCTATACCACAACCCAAGTAAGAAGCAGTGTCACAATACCATGCATCCCACATAGAGTAAGACACGACTACATATGTCAGTCTGTTTTCTTAAAGATGCACCACATACTGAGTATaacatatttaactaggcaagtcagttaagaacaaattattatttacaatgacagcctactccagctaaacccggacgacactgggccaattgtgcgccgccctatgggactcccaatcacagccagatgtgatacagcctggatttgaatcaGGATGAACAGCAGTGGTCAGTCATACCCATTGGCCTCCCTCTACGTAGGGGACCTGCATCCTGACGTCACAGAGGCCATGCTCTACCAGAAGTTCTCTCCTGCTGGGCCCATCACATCCATCCgtgtctgccgtgatgtcatcaCTCGCAGGTCCCTAGGATACGCATACATCAACTTCCAACAACCCGCTGATGCGGAATGTGCTCTGGATACAATGAACTATGAGGTCCTCAAGGGTAGGCCTATCAGAATAATGTGGTCTCAGCGTGACCCAGGGCTACGGAAGTCAGGAGTTGGAAACATTTTTATCAAGAACATGGACGAGTCCATTGACAACAAGGCCCTGTACGACACATTCTCAGCCTTTGGGAATATTCTGTCTTGCAAGGTAGTGTGTGATGAGAATGGCTCCAAAGGCTACGGCTTTGTTCACTTTGAAACCCAAGAGGCAGCCAATCGTGCCATTGATACCATGAATGGAATGCTATTGAATGACCGGAAAGTTTTTGTTGGCCACTTTAAGTCCCATAAGGAGCGACAGGCTGAGTTTGGGGCCAAAGCCATGAAGTTCACCAATGTGTACATCAAGAACTTTGGCGACGACTATAGTGATGAGAAACTCCAGGAGGTCTTCTCTGCATTTGGCAGGACCCTCAGTGTGCGGGTGATGATGGACGAAAGGGGCCGGTCTCGTGGATTTGGCTTTGTAAACTATGAAAACCATGAGGATGCACAAAGGGCAGTTGAGGAGATGAATGGGAAAGAACTCGTTCCTGGCCGAGTTCTGTATGTGGGCCGTGCTCAGAAGAGGATGGAGCGACAGGGGGAGCTGAAACGCAAGTTTGAGCTGATCAAACAGGAACGTATCCACCGCTATCAGGGGGTCAATTTGTACGTCAAGAACTTGGATGATGGGTTGGATGACGAGAAACTCAGGAAGGAGTTTGCCCCTTATGGCACCATCACCAGTGCCAAGGTGATGACGGACGGGGGCCACAGCAAGGGCTTTGGCTTCGTCTGTTTCTCGTCTCCCGAGGAGGCCACCAAAGCGGTAACTGAGATGAACGGCCGCATTGTGGCCACAAAGCCGCTGTACGTGGCTCTGGCCCAGCGCAAGGAGGAGCGGAAGGCCATCCTCACCAACAAATACATGCAGAGGACCATGCCTGGCCCAGTCATCGACTCCTACCAGCAGGCAGGCTACTACATGTCTGCTGTGCCTCAGccCCCAAGTCGCACCTTCTACAACCCCAACCCTGCAAGCACCATGAGGACATCTCCTCGCTGGGCTGCACAGCCACCCAGACCACAGGcACCCTACTCGGGCCAGTTTGTCAGGTCTGCTGTTCCCCGACGCGCCTCCACCCCCATCAGCACCGTCAGACAGGCCTCCACCCAGGCTCCACGCATCATCAACTACACACAGAGGATGGctaacattggcacacagacagcaggagGTCGGGCAGGCATGTCTGGTGGTATGGTCCGAGGCACCCAGTATAAATACTCATCAGGGGTGAGGAACTTACAGCAGGTCATCACTATGCCTGCACCAATGGCAGTGCAGCAGGTTGTTACCCAGCAGATGATGGAGCCAGCGGTGCATGTCAGAGGCCAGGAACCCCTCACTGCCTCCATGCTGGCGGCAGCCCCTCTCATGGAGCAGAAACAGCTGCTTGGTGAGCGATTGTACCCTCTGATCCATGGCTTTCACCCCAACCTGGCTGGTAAAATCACTGGGATGCTGCTGGAGATTGACAACTCTGAGCTGCTGCACATGCTGGAGTCACCCGAGTCCCTGCATTCTAAGGTGGATGAGGCagtagctgtgctgcaagcccaccAGGCCAAGGAAAACTCTCCTAAGAAGTAGAGAACCCTTTCAGGTTAGGTTATGAGTTAATAGTAGTTACTATGCCAAAATTGACCACACATGTCATTTGTGACAGTAAAGCAGTTGTTACTGAATTTGGATTTTACATGTATTCCAGGACTCTGCGAAGAAATCGCTGAAGGAGGAAAAAGTTAAAACGAACAAAAAAA
>XM_021566819.2
CATCATCAATAAGTTACTTATTTGTAGATCAGTTTACGCATTCATTATGGTTTTGATCCTCTTGAACACAGCCATTGTGAAGCAGCCGATTGGAGACCTAACCTATACCACAACCCAAGTAAGAAGCAGTGTCACAATACCATGCATCCCACATAGAGTAAGACACGACTACATATGTCAGTCTGTTTTCTTAAAGATGCACCACATACTGAGTATaacatatttaactaggcaagtcagttaagaacaaattattatttacaatgacagcctactccagctaaacccggacgacactgggccaattgtgcgccgccctatgggactcccaatcacagccagatgtgatacagcctggatttgaatcaGGTACTATAAGTgactcctcttgcactgagatgcagtgccatagaccactCGGGAGTTAGAATCCTCTGAATATATAAAAAGGCAATTGGTGAATGTGGAACAGCCTTTCTTGCTTTGTTTTTACTGACCAGTGTTCTTCTAGATTTGTGTCTTTTAAAAACCATCCTAGTTTCACTTACTGTACATGTTAAGGAAACTGAAAAGTTGTTTAAGGTAAAGGTAATCTTTATTTTAACGATATTTACAAAGTACATTGTACAATTCCCAAATTATTGAATGTAGATGAAAATCAAAATGTGTGTAGTCAGTCAGGGCAACCCCACACTCCAGCAAAGTGTGTTTTGCCAATgaagtacaggtaactgccaaaataaaggaaacaccaacatagtatCTTAATAGGGCGTTGTGCCACCATGAGCCGCCAGAACTTCAATGCGCCTTGGAATACATTCATACACACCCATAGAATTAGTAATTTAATCAAATCTCTATAGTGACACCATTCGGAATTCCATCATTTGGAGTATTGTTGATGGAAAATGCTGTTTCAGaagccgctccagaatctccctgCCCATCCTGAGACCCCTCCTTTCagagtcactgagatctcttatATTCATATTTGCCAAAATAATGGGCCACTGGGCATTTTTAtatatgaccctaagcatgatgggatgttaaattgcttaattaactcaggaaccacacctgtggaaGCGTCTGCTTCGTATCCCTCATTTTCTTACGTGTTTTTTTATTTTGGCATTTACCTGAATATAAACTGTTTACATCATTGGTTTTAGCTCTTCATTTAATTGTTGAAACAAATGTTTGGTCTTTGCAAAGTGCAAATTAACAGTGGTCAATTTCATACTTCGCTAGCCTAGACATATACTTCAAAAGTATGCAACATTGAGTGGCGGTACGAGTTTTGTTGTTTTTCGAATCCCAGAATGTAGCTTTTCAATGTACATGGACTACTTTTTCACGCGGAGGATTAGTCGGGCCGTGTCATTATCATAGTTTATAAATAGGTAATTGAAGAATATTCATGGTCGCGGAGTGAAAAGGCAGGTGTTTCACGGCAATTATCAAATTAAAACAGAAACATTTTACAAAGTTTTAGGCCAGAACTTTTTAAATTAAAGAATTTGAGTTGTTTCCACCTTGGCCAATTCAATAAGGATGAACAGCAGTGGTCAGTCATACCCATTGGCCTCCCTCTACGTAGGGGACCTGCATCCTGACGTCACAGAGGCCATGCTCTACCAGAAGTTCTCTCCTGCTGGGCCCATCACATCCATCCgtgtctgccgtgatgtcatcaCTCGCAGGTCCCTAGGATACGCATACATCAACTTCCAACAACCCGCTGATGCGGAATGTGCTCTGGATACAATGAACTATGAGGTCCTCAAGGGTAGGCCTATCAGAATAATGTGGTCTCAGCGTGACCCAGGGCTACGGAAGTCAGGAGTTGGAAACATTTTTATCAAGAACATGGACGAGTCCATTGACAACAAGGCCCTGTACGACACATTCTCAGCCTTTGGGAATATTCTGTCTTGCAAGGTAGTGTGTGATGAGAATGGCTCCAAAGGCTACGGCTTTGTTCACTTTGAAACCCAAGAGGCAGCCAATCGTGCCATTGATACCATGAATGGAATGCTATTGAATGACCGGAAAGTTTTTGTTGGCCACTTTAAGTCCCATAAGGAGCGACAGGCTGAGTTTGGGGCCAAAGCCATGAAGTTCACCAATGTGTACATCAAGAACTTTGGCGACGACTATAGTGATGAGAAACTCCAGGAGGTCTTCTCTGCATTTGGCAGGACCCTCAGTGTGCGGGTGATGATGGACGAAAGGGGCCGGTCTCGTGGATTTGGCTTTGTAAACTATGAAAACCATGAGGATGCACAAAGGGCAGTTGAGGAGATGAATGGGAAAGAACTCGTTCCTGGCCGAGTTCTGTATGTGGGCCGTGCTCAGAAGAGGATGGAGCGACAGGGGGAGCTGAAACGCAAGTTTGAGCTGATCAAACAGGAACGTATCCACCGCTATCAGGGGGTCAATTTGTACGTCAAGAACTTGGATGATGGGTTGGATGACGAGAAACTCAGGAAGGAGTTTGCCCCTTATGGCACCATCACCAGTGCCAAGGTGATGACGGACGGGGGCCACAGCAAGGGCTTTGGCTTCGTCTGTTTCTCGTCTCCCGAGGAGGCCACCAAAGCGGTAACTGAGATGAACGGCCGCATTGTGGCCACAAAGCCGCTGTACGTGGCTCTGGCCCAGCGCAAGGAGGAGCGGAAGGCCATCCTCACCAACAAATACATGCAGAGGACCATGCCTGGCCCAGTCATCGACTCCTACCAGCAGGCAGGCTACTACATGTCTGCTGTGCCTCAGccCCCAAGTCGCACCTTCTACAACCCCAACCCTGCAAGCACCATGAGGACATCTCCTCGCTGGGCTGCACAGCCACCCAGACCACAGGcACCCTACTCGGGCCAGTTTGTCAGGTCTGCTGTTCCCCGACGCGCCTCCACCCCCATCAGCACCGTCAGACAGGCCTCCACCCAGGCTCCACGCATCATCAACTACACACAGAGGATGGctaacattggcacacagacagcaggagGTCGGGCAGGCATGTCTGGTGGTATGGTCCGAGGCACCCAGTATAAATACTCATCAGGGGTGAGGAACTTACAGCAGGTCATCACTATGCCTGCACCAATGGCAGTGCAGCAGGTTGTTACCCAGCAGATGATGGAGCCAGCGGTGCATGTCAGAGGCCAGGAACCCCTCACTGCCTCCATGCTGGCGGCAGCCCCTCTCATGGAGCAGAAACAGCTGCTTGGTGAGCGATTGTACCCTCTGATCCATGGCTTTCACCCCAACCTGGCTGGTAAAATCACTGGGATGCTGCTGGAGATTGACAACTCTGAGCTGCTGCACATGCTGGAGTCACCCGAGTCCCTGCATTCTAAGGTGGATGAGGCagtagctgtgctgcaagcccaccAGGCCAAGGAAAACTCTCCTAAGAAGTAGAGAACCCTTTCAGGACTCTGCGAAGAAATCGCTGAAGGAGGAAAAAGTTAAAACGAACAAAAAAA

Function

NR:

description
embryonic polyadenylate-binding protein-like

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566818.2 False 2415 mRNA 0.51 15 60645712 60652804
XM_021566819.2 True 3503 mRNA 0.47 16 60645712 60652804

Neighbor

gene id symbol gene type direction distance location
LOC110492466 LOC106566648 coding downstream 190503 60431333 ~ 60455209 (-)
LOC110491135 NA coding downstream 221054 60423345 ~ 60424658 (-)
LOC110491133 LOC106566645 coding downstream 302350 60139129 ~ 60343362 (-)
LOC110492464 NA coding downstream 508341 60134252 ~ 60137371 (-)
LOC110491132 LOC106566643 coding downstream 596203 59983280 ~ 60049509 (-)
LOC100136193 LOC100136193 coding upstream 824 60653628 ~ 60657344 (-)
LOC118939463 NA coding upstream 9110 60661556 ~ 60672085 (-)
LOC110492474 smim4 coding upstream 29358 60680449 ~ 60683566 (-)
LOC110492475 LOC106566658 coding upstream 37464 60689293 ~ 60743762 (-)
kctd6b kctd6 coding upstream 96954 60749758 ~ 60752752 (-)
G1396527 NA non-coding downstream 19769 60625715 ~ 60625943 (-)
G1396526 NA non-coding downstream 20265 60625114 ~ 60625447 (-)
G1396525 NA non-coding downstream 21685 60623558 ~ 60624027 (-)
G1396379 NA non-coding downstream 226633 60418185 ~ 60419079 (-)
G1396370 NA non-coding downstream 244960 60400468 ~ 60400752 (-)
G1396533 NA non-coding upstream 15063 60667867 ~ 60668144 (-)
G1396535 NA non-coding upstream 17149 60669953 ~ 60670220 (-)
G1396539 NA non-coding upstream 32387 60685191 ~ 60689112 (-)
G1396467 NA other downstream 63677 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 1288863 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 1532815 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 1798696 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1898413 58746870 ~ 58747299 (-)
G1396543 NA other upstream 40805 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 100301 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2081939 62734743 ~ 62735569 (-)
G1399235 NA other upstream 2546315 63199119 ~ 63292201 (-)

Expression


Co-expression Network