LOC118939463


Basic Information

Item Value
gene id LOC118939463
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60661556 ~ 60672085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118939463
ATGTCTATCCggctggacaatctgctggctgcccgcgggcgttcggagagggtcctgtTCGTTCCACCACCTAGCACTCCCGCTCCCATTCCTATGGAGTTAGGGGGGGCcgtgccgaggggtaccggaggaggagtcTCCCCCTTcaccagctgtgATGGCCCTGACGACTCTGTAGAGATGTTGACACGTCAAGGGACTACTTCGGACTACTTCTCCAAGATTCCCCAAACAAGAGGCTGCTCGTGTGTCGAACAATGGAGCCCTACCCCCTGACCTCAGCTACATTGTCAATGCCAGACATGGAGGAGAGAACTACGTGTTCTCCTTACTGACAGGGTACTGTGACCCCCTGCAGGGGTCGAAGTGAGAGTGGACCTCTACTACAATCGTTATTTCCCTGGCAAGGCCATTGGCTTGGCTCGTCCCATCTTACAACAAGGTTCTAGAGTTTGAGGATGCTACTATGAGCCAGGTGGCCAAAGATGTCTGCACCTGCCTGAGGTGGACAGTGTGA
>TU1594786
ACcttaatctcacacaaattatcaatgaacctaccaggtacaaccccaaatctgtaaacatgggcaccctaatAGATGtgatcctgaccaacttgccctctaaatacacctctgctgttttcaaccaggatctcagcgatcaattcctcattgcctgcgtccgttatgggtccgtggtcaaacgaccaccccttatCACTGTCAAGGgtcccctaaaacacttctgcgagcaggcctttctaatcgacctggcccgggtatcctggaaggatattgacctcatcccgtcagtagaggatgcctggttgttctttaaagtGCTTTtgtcaccatcttaaataagaatGCCCTTTCAAAAAATTGAGAACTAAGAACAgacatagcccttggttcactccagacttgactgcccttgaccagcacaaaaacatcctgtggtgcactgcactagcatcaaatagtccccgcgatatgcaacttttcagggaagccaggaaccaatatacacagacagttaggaaagcaaaggctagctttttcaaacagaaatttgcattctgcagcactaattccaaaaagttatgggacactaaagtccatggagaataagagcacctcctcccagctgcccaattcactgaggctaggaaacactgtcaccaccgataaatccacaataattaagaatttcaataagcatttctctacggctggccatgctttccacctggctaccccaaccccggccaacagctctgcaccccctgcagcaactggcCAAAGCcaccgcttctccttcacccaaatcctaACATCTGATGTTCTGATAGAGCTACAAGATcgggatccctacaaatcagctggactagacaatctggaccatctcttccagtatttctacttgcacatcctcatctggacacctatcactccagtgttatttgctaaattgtaattacttcgccactatggcctatttattgccttacttcatttgcacacactgtatacagatttttctattgtgttattgactgtacgtttgtttatcccacgggtaactctgtgttgtttttgtcgcactgctttgctttatcttggccaggttgcagttgtaattgagaacttgttctcaactggcctaccgggttaaataaaggtggggggAAAAAGGACAGTTGTGAAGGAAATGGTCTTATGAGTGTGCGGTATTCACAATCTGCCTCCGGCTTTCCTTGCAGACATGGAGGAGAGAACTACGTGTTCTCCTTACTGACAGGGTACTGTGACCCCCTGCAGGGGTCGAAGTGAGAGTGGACCTCTACTACAATCGTTATTTCCCTGGCAAGGCCATTGGCTTGGCTCGTCCCATCTTACAACAAGGTTCTAGAGTTTGAGGATGCTACTCATGGGGTCTGAAATCTAGGTACCATTGGTCTATTACATGAAGAGACACAGGTGCTCACTTTTTGAAGATCTGGAAGATAGATAGCATACAGACCACCAAAATAAGACAGCTCAACTTcataacccactggaattgtgatacagtgaattataagtgaaataatctgtaaacaattgttggaaaaat
>TU1594787
CAAAGTAAAGCTGGGTGTAAGCATTGCGGTTCATGGGACAGTTGTGTGCTGTAGCAGCAGAACTCGTTTGAATAATCTCGTCATCACTAATCTGAGTCTGTCCAGGGGAAAGATGGCCCTATCGTCGTTGGGTGTGTTGACTGCAGGAGGTGCAGTGTTGCTCAGATGCTTCACCAGACGGTGAACGCATCAGATCTGGAGTTTCACCCACCATTTTACCCATGGACTCAGTGGCATGCTGTCATCTCTTGATCATGCCAGTATCTGACTTGGATATCAGGTGTTTTCTGCCTGTCATAGTATGGAATACATGGCCTTCTGAAACCTTGTAGAAGTCTTGCAGACATAAGCTGAAGTCAAGGTGCTTGCTGAAAAGTAGATGGCCCTGACGACTCTGTAGAGATGTTGACACGTCAAGGGACTACTTCGGACTACTTCTCCAAGATTCCCCAAACAAGAGGCTGCTCGTGTGTCGAACAATGGAGCCCTACCCCCTGACCTCAGCTACATTGTCAATGCCAGACATGGAGGAGAGAACTACGTGTTCTCCTTACTGACAGGGTACTGTGACCCCCTGCAGGGGTCGAAGTGAGAGTGGACCTCTACTACAATCGTTATTTCCCTGGCAAGGCCATTGGCTTGGCTCGTCCCATCTTACAACAAGGTTCTAGAGTTTGAGGATGCTACTCATGGGGTCTGAAATCTAGGTACCATTGGTCTATTACATGAAGAGACACAGGTGCTCACTTTTTGAAGATCTGGAAGATAGATAGCATACAGACCACCAAAATAAGACAGCTCAACTTcataacccactggaattgtgatacagtgaattataagtgaaataatctgtaaacaattgttggaaaaat

Function

NR:

description
cytochrome c1, heme protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118939463 False 517 mRNA 0.56 4 60661914 60672085
TU1594786 False 1594 TUCP 0.45 2 60661556 60663516
TU1594787 True 875 lncRNA 0.46 6 60661556 60667188
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Neighbor

gene id symbol gene type direction distance location
LOC100136193 LOC100136193 coding downstream 4570 60653628 ~ 60657344 (-)
pabpc1l LOC106566651 coding downstream 9110 60645712 ~ 60652804 (-)
LOC110492466 LOC106566648 coding downstream 206705 60431333 ~ 60455209 (-)
LOC110491135 NA coding downstream 237256 60423345 ~ 60424658 (-)
LOC110491133 LOC106566645 coding downstream 318552 60139129 ~ 60343362 (-)
LOC110492474 smim4 coding upstream 10077 60680449 ~ 60683566 (-)
LOC110492475 LOC106566658 coding upstream 18183 60689293 ~ 60743762 (-)
kctd6b kctd6 coding upstream 77673 60749758 ~ 60752752 (-)
abhd6b LOC106566659 coding upstream 80921 60753006 ~ 60758788 (-)
slmapb LOC106566662 coding upstream 104993 60777078 ~ 60790844 (-)
G1396527 NA non-coding downstream 35971 60625715 ~ 60625943 (-)
G1396526 NA non-coding downstream 36467 60625114 ~ 60625447 (-)
G1396525 NA non-coding downstream 37887 60623558 ~ 60624027 (-)
G1396379 NA non-coding downstream 242835 60418185 ~ 60419079 (-)
G1396370 NA non-coding downstream 261162 60400468 ~ 60400752 (-)
G1396539 NA non-coding upstream 13106 60685191 ~ 60689112 (-)
G1396547 NA non-coding upstream 29533 60701618 ~ 60702169 (-)
G1396548 NA non-coding upstream 30642 60702727 ~ 60702991 (-)
G1396467 NA other downstream 79879 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 1305065 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 1549017 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 1814898 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1914615 58746870 ~ 58747299 (-)
G1396543 NA other upstream 21524 60693609 ~ 60694036 (-)
G1398619 NA other upstream 2062658 62734743 ~ 62735569 (-)
G1399235 NA other upstream 2527034 63199119 ~ 63292201 (-)
G1399367 NA other upstream 2712764 63384849 ~ 63385262 (-)
G1396533 NA non-coding upstream 679 60667867 ~ 60668144 (-)
G1396535 NA non-coding upstream 2765 60669953 ~ 60670220 (-)

Expression

LOC118939463 Expression in all Baseline Samples

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LOC118939463 Expression in each Bioproject

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LOC118939463 Expression in each Sample
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Co-expression Network