LOC110492507 (LOC106566595)


Basic Information

Item Value
gene id LOC110492507
gene name LOC106566595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61687247 ~ 61689079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566892.2
GCGAGTCACAATCTGCCCAGGGCGAGGGCAAGACGCATGCTAGAACCCGGTTAAGGAGGCACGCGCTCCAGTCTCTCACCCATGCCAGTCTTTAAACTCGTTTAACGTCGCTTTGCAAAACACACAATTACAGAAGTGGTTTTTAATTTATATGCGCGCAGGGGAACGTAAACAGGGCTGAATTCAGCAAGAGGCCGAATCCATTCACTGCAACTGTTCTGAAGAGCCACAGAGTAAGTGTGTTGACAAGGACTCCGGGAGAGTGTGTGAATACTCTCCACGACAAAAGAAcgacagggaggaagaggatacATTTAAATCGTATTTTTTTAATTGTCCTTATTTTGGAAGAGAAAATGAATGCCGGGGAAGAGAACCTGCTGAAGTCCATCAGCAACGACACTCTACTCGACCTGACGCAGCGCTATGGCCAGTCCGCATTCGGTTTTGGACCTGGTCAGGTTACTGGAAGTTCTGGAGGGCGCTACCCTCTCACACCGGCCGCCGACTTCCTCCACGGTCAGACGGGCAAGTCCAACGAGAGCGGCGGGGAGCAAACCAGCGATGACGACGACAGTTTTGACCCTCTGGACCCCCGGAAGAGGGGCTCGGGCTTCGACGATGACAAACACGGGGGTCCCCTTTCTAAGAAGCCCAAGGAGCAGCGGTCTCTGCGCCTGAGCATCAATGCGCGCGAGAGGAGACGGATGCACGACCTGAACGATGCGTTAGACGGCCTGCGCTCTGTGATCCCATATGCGCACAGCCCGTCGGTGAGGAAACTCTCCAAAATAGCCACTCTCCTCCTGGCCAAGAACTACATCCTCATGCAGGCACAGGCTCTGGAGGAGATGAGGCGGCTGGTGGCTTATCTGAACCAGGGACAGAGCATCAACTCGCCCATCCCCACCGCCCTTGCACCCTTTGGACAGGCGGCCGTGTACCCTTTCACGGGCTCGGCACTCGCCACCCACGCCGATAAATACTCAGGGACAACTGCAAGTCTCTTCAAGCACCACAACGACAAGCCTTGATATCGTTTCTCTGTATATACCCGAACTTCATCCAATTGTATCCATatatcggtctctctctcccactttctatAGTTATTTGAATACGTTGGAATGGGGACTAGGCCTACAGAATAAAGTCTAATGCGTAAATCCTAAACTATGTTTAAATAACTGCTGCCATGTTTCATCCAGATTGAACAAAAACATGAAAAACAACACTGGCCTTTACTAAaggctagattagggttggagctaaaaaatagctttttttttaaatatgggaGAAAGTGTTTATCTTTCCCTAAACTCTCCTCAGAGTTAAAGGAATTTGATGAGTTGTTGTGGCCGTGACTTACCATGTTTTAATTGACAGTTTGACATTTTATGTGTGACCATAAAAACGGTACCCTTGCAAAAGTTATGAGTGATCTAAATATCTCATTCTTGTGTACTATGCAACATTCAGCAAAACGAAGAAAAATACGGAGAGAGATGACGAAAACGCTTTCCAGTGTCCAAGTTCTTTTGCAGCACTGTACATTTTGAATCAACTTTCCCTAATTTTAACTGATGCTATGTGGGGAAACACTAGTTTATTATGTCATATATTTTTGAAAAGATGTATTGAGGATTTTGGTTTGGTTATTGCACAATTCACATGATTGTAAGCTATTGTACAACTGTGGAAAACTACTTGATCAAAGTACTGCTATGACATTGGTTTTCAAAACAACAGCCTGACGAAGCATTTGGTTGTGTTGCAACATGAATTTCATATATTGTTTATATGTCTttataaataaaacatatatcTATG

Function

NR:

description
PREDICTED: class E basic helix-loop-helix protein 23-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566892.2 True 1833 mRNA 0.46 1 61687247 61689079

Neighbor

gene id symbol gene type direction distance location
LOC110492509 LOC106566095 coding downstream 85824 61595093 ~ 61601423 (-)
dnah12 dnah12 coding downstream 92426 61558700 ~ 61594821 (-)
asb14b LOC106566601 coding downstream 128825 61552330 ~ 61558422 (-)
LOC110492491 LOC106566602 coding downstream 135493 61525712 ~ 61551754 (-)
LOC110491138 LOC106571845 coding downstream 230781 61329341 ~ 61456466 (-)
LOC110492496 LOC106566592 coding upstream 90039 61779118 ~ 61796715 (-)
LOC110492510 LOC106566591 coding upstream 125465 61814544 ~ 61943821 (-)
LOC110529871 zbtb46 coding upstream 492150 62181229 ~ 62311208 (-)
uckl1b uckl1 coding upstream 639709 62328788 ~ 62386980 (-)
LOC118939568 NA coding upstream 653287 62342366 ~ 62347109 (-)
G1398047 NA non-coding downstream 47863 61637703 ~ 61639384 (-)
G1398045 NA non-coding downstream 57568 61627622 ~ 61629679 (-)
G1398044 NA non-coding downstream 63409 61623555 ~ 61623838 (-)
G1398043 NA non-coding downstream 64392 61622290 ~ 61622855 (-)
G1398042 NA non-coding downstream 65439 61621014 ~ 61621808 (-)
G1398101 NA non-coding upstream 43495 61732574 ~ 61732821 (-)
G1398110 NA non-coding upstream 54749 61743828 ~ 61744029 (-)
G1398116 NA non-coding upstream 66892 61755971 ~ 61757890 (-)
G1398118 NA non-coding upstream 73446 61762525 ~ 61763237 (-)
G1398120 NA non-coding upstream 83962 61773041 ~ 61778102 (-)
abhd6b LOC106566659 other downstream 932376 60753006 ~ 60758788 (-)
G1396543 NA other downstream 993211 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 1023731 60661556 ~ 60672085 (-)
G1396467 NA other downstream 1105212 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 2330398 59354200 ~ 59356849 (-)
G1398619 NA other upstream 1045664 62734743 ~ 62735569 (-)
G1399235 NA other upstream 1510040 63199119 ~ 63292201 (-)
G1399367 NA other upstream 1695770 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 2414291 64103370 ~ 64105039 (-)
G1400552 NA other upstream 2567847 64256926 ~ 64257433 (-)

Expression


Co-expression Network