LOC110492510 (LOC106566591)


Basic Information

Item Value
gene id LOC110492510
gene name LOC106566591
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61814544 ~ 61943821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566897.2
TgccccgctacacacacacactcgagtGCTAGCGGTAGTAGGCTATCAACTCAAGTTACCCCTCTCACACACAAAGCGATCATTTTGGGGAAAGAAAATGCATGGGACGCCAGTGCCTGGAGCTTACAGACACAGTTTTCACCGTTGACCGAGCTTGAAGCCATTCTTTGCACTGAAAGGTCCTTGCCATAGTGAACCAGTCTAGACCGTTGTGTGTGTTTTCATCGTTTCTCGAGTGCTATTTGGGTTTTAATACAATGGGGTGCTGCAGCGGCCGTTGCACGCTCATCTTTCTTTGCACGATCCAGCTGttggTGGCATTGGAGAGACAGGTGTTTGACTTCCTGGGGTACCAGTGGGCGCCCATCCTGGCCAACTTCTTCcacatcatcatcgtcatcctcGGCCTCTTCGGCACCATACAATACCGACCACGCTACATTGTAGTGTACACAGTGTGGATGGCTCTCTGGGTGGCCTGGAATGTCTTCATCATTTGTTACTACCTGGATGTGGGAGACTTGACCAAGGACAGTGACCTGCTGACGTTTAACATCTCGGCTCACCACTCGTGGTGGAGTGAACACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGGGGTGGGCACCGTGGACAGCCAGTCCTACATCTCTGTCATGGGCTGTCTCATGGAGTACCAGTACATAGAGGTCCTACACAGTGGAACACAGATCCTCATTGCTCTCCTGGGCTTCGTGTACGCCTGTTACGTCGTCAGCGCCATCACTGAAGAGGAAGACAGCTGTCTACGTAAATAGGGCGGCAGCCGACGCCGTGATTTCCCGTGGAAACAAAATGGCTGCTCTGACTGACACAACAACAGTCCCAGAATGCACTGCGGCAGGCCAGACATTCCTCTGATTCTCTACTTCTTTATTTCAGCTCTTCAGTACTTCAAACATGTAAATGACTGGTTTTCTGCTTAGTAATGACTGTAGTTTccagttctgttctgttctgttgttagtgggagggatggtggggatagtg
>XM_036947507.1
TgccccgctacacacacacactcgagtGCTAGCGGTAGTAGGCTATCAACTCAAGTTACCCCTCTCACACACAAAGCGATCATTTTGGGGAAAGAAAATGCATGGGACGCCAGTGCCTGGAGCTTACAGACACAGTTTTCACCGTTGACCGAGCTTGAAGCCATTCTTTGCACTGAAAGGTCCTTGCCATAGTGAACCAGTCTAGACCGTTGTGTGTGTTTTCATCGTTTCTCGAGTGCTATTTGGGTTTTAATACAATGGGGTGCTGCAGCGGCCGTTGCACGCTCATCTTTCTTTGCACGATCCAGCTGttggTGGCATTGGAGAGACAGGTGTTTGACTTCCTGGGGTACCAGTGGGCGCCCATCCTGGCCAACTTCTTCcacatcatcatcgtcatcctcGGCCTCTTCGGCACCATACAATACCGACCACGCTACATTGTAGTGTACACAGTGTGGATGGCTCTCTGGGTGGCCTGGAATGTCTTCATCATTTGTTACTACCTGGATGTGGGAGACTTGACCAAGGACAGTGACCTGCTGACGTTTAACATCTCGGCTCACCACTCGTGGTGGAGTGAACACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGGGGTGGGCACCGTGGACAGCCAGTCCTACATCTCTGTCATGGGCTGTCTCATGGAGTACCAGTACATAGAGGTCCTACACAGTGGAACACAGATCCTCATTGCTCTCCTGGGCTTCGTGTACGCCTGTTACGTCGTCAGCGCCATCACTGAAGAGGAAGACAGCTTTGATTTTGTTGGTGGATTTGACCCCTTCCCCCTCTACCATGTCAATGAGAAACCATCCCATCTCCTCTTAAAGCCCATGTAtctGTCTACGTAAATAGGGCGGCAGCCGACGCCGTGATTTCCCGTGGAAACAAAATGGCTGCTCTGACTGACACAACAACAGTCCCAGAATGCACTGCGGCAGGCCAGACATTCCTCTGATTCTCTACTTCTTTATTTCAGCTCTTCAGTACTTCAAACATGTAAATGACTGGTTTTCTGCTTAGTAATGACTGTAGTTTccagttctgttctgttctgttgttagtgggagggatggtggggatagtg
>XM_036947509.1
cCCTGAGGGGGATGGTGGAGAGAATAGAATATGGTGAAATGTATTGATGGAAAATGTGTGAAaaagttggTGGCATTGGAGAGACAGGTGTTTGACTTCCTGGGGTACCAGTGGGCGCCCATCCTGGCCAACTTCTTCcacatcatcatcgtcatcctcGGCCTCTTCGGCACCATACAATACCGACCACGCTACATTGTAGTGTACACAGTGTGGATGGCTCTCTGGGTGGCCTGGAATGTCTTCATCATTTGTTACTACCTGGATGTGGGAGACTTGACCAAGGACAGTGACCTGCTGACGTTTAACATCTCGGCTCACCACTCGTGGTGGAGTGAACACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGGGGTGGGCACCGTGGACAGCCAGTCCTACATCTCTGTCATGGGCTGTCTCATGGAGTACCAGTACATAGAGGTCCTACACAGTGGAACACAGATCCTCATTGCTCTCCTGGGCTTCGTGTACGCCTGTTACGTCGTCAGCGCCATCACTGAAGAGGAAGACAGCTTTGATTTTGTTGGTGGATTTGACCCCTTCCCCCTCTACCATGTCAATGAGAAACCATCCCATCTCCTCTTAAAGCCCATGTAtctGTCTACGTAAATAGGGCGGCAGCCGACGCCGTGATTTCCCGTGGAAACAAAATGGCTGCTCTGACTGACACAACAACAGTCCCAGAATGCACTGCGGCAGGCCAGACATTCCTCTGATTCTCTACTTCTTTATTTCAGCTCTTCAGTACTTCAAACATGTAAATGACTGGTTTTCTGCTTAGTAATGACTGTAGTTTccagttctgttctgttctgttgttagtgggagggatggtggggatagtg
>XM_036947508.1
TTgccccgctacacacacacactcgagtGCTAGCGGTAGTAGGCTATCAACTCAAGTTACCCCTCTCACACACAAAGCGATCATTTTGGGGAAAGAAAATGCATGGGACGCCAGTGCCTGGAGCTTACAGACACAGTTTTCACCGTTGACCGAGCTTGAAGCCATTCTTTGCACTGAAAGGTCCTTGCCATAGTGAACCAGTCTAGACCGTTGTGTGTGTTTTCATCGTTTCTCGAGTGCTATTTGGGTTTTAATACAATGGGGTGCTGCAGCGGCCGTTGCACGCTCATCTTTCTTTGCACGATCCAGCTGttggTGGCATTGGAGAGACAGGTGTTTGACTTCCTGGGGTACCAGTGGGCGCCCATCCTGGCCAACTTCTTCcacatcatcatcgtcatcctcGGCCTCTTCGGCACCATACAATACCGACCACGCTACATTGTAGTGTACACAGTGTGGATGGCTCTCTGGGTGGCCTGGAATGTCTTCATCATTTGTTACTACCTGGATGTGGGAGACTTGACCAAGGACAGTGACCTGCTGACGTTTAACATCTCGGCTCACCACTCGTGGTGGAGTGAACACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGGGGTGGGCACCGTGGACAGCCAGTCCTACATCTCTGTCATGGGCTGTCTCATGGAGTACCAGTACATAGAGGTCCTACACAGTGGAACACAGATCCTCATTGCTCTCCTGGGCTTCGTGTACGCCTGTTACGTCGTCAGCGCCATCACTGAAGAGGAAGACAGCTTTGATTTTGTTGGTGGATTTGACCCCTTCCCCCTCTACCATGTCAATGAGAAACCATCCCATCTCCTCTTAAAGCCCATGTAtctgtaa

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4-like isoform X1

GO: NA

KEGG:

id description
K22735 NKAIN; sodium/potassium-transporting ATPase subunit beta-1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566897.2 False 1035 mRNA 0.51 6 61814544 61941054
XM_036947507.1 False 1120 mRNA 0.51 7 61814544 61941054
XM_036947509.1 False 875 mRNA 0.50 7 61814544 61943821
XM_036947508.1 True 879 mRNA 0.52 6 61816555 61941055

Neighbor

gene id symbol gene type direction distance location
LOC110492496 LOC106566592 coding downstream 17829 61779118 ~ 61796715 (-)
LOC110492507 LOC106566595 coding downstream 125465 61687247 ~ 61689079 (-)
LOC110492509 LOC106566095 coding downstream 213121 61595093 ~ 61601423 (-)
dnah12 dnah12 coding downstream 219723 61558700 ~ 61594821 (-)
asb14b LOC106566601 coding downstream 256122 61552330 ~ 61558422 (-)
LOC110529871 zbtb46 coding upstream 237408 62181229 ~ 62311208 (-)
uckl1b uckl1 coding upstream 384967 62328788 ~ 62386980 (-)
LOC118939568 NA coding upstream 398545 62342366 ~ 62347109 (-)
LOC110492495 znf512b coding upstream 443607 62387428 ~ 62459484 (-)
LOC118939569 samd10 coding upstream 526129 62469950 ~ 62665506 (-)
G1398133 NA non-coding downstream 64 61813884 ~ 61814480 (-)
G1398132 NA non-coding downstream 2091 61808397 ~ 61812453 (-)
G1398126 NA non-coding downstream 14807 61799318 ~ 61799737 (-)
G1398120 NA non-coding downstream 36442 61773041 ~ 61778102 (-)
G1398118 NA non-coding downstream 51307 61762525 ~ 61763237 (-)
G1398231 NA non-coding upstream 37857 61981678 ~ 61981894 (-)
G1398243 NA non-coding upstream 58190 62002011 ~ 62002243 (-)
G1398250 NA non-coding upstream 66648 62010469 ~ 62010714 (-)
G1398255 NA non-coding upstream 72340 62016161 ~ 62017667 (-)
G1398245 lime1 non-coding upstream 103657 62047478 ~ 62048246 (-)
abhd6b LOC106566659 other downstream 1059673 60753006 ~ 60758788 (-)
G1396543 NA other downstream 1120508 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 1151028 60661556 ~ 60672085 (-)
G1396467 NA other downstream 1232509 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 2457695 59354200 ~ 59356849 (-)
G1398619 NA other upstream 790922 62734743 ~ 62735569 (-)
G1399235 NA other upstream 1255298 63199119 ~ 63292201 (-)
G1399367 NA other upstream 1441028 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 2159549 64103370 ~ 64105039 (-)
G1400552 NA other upstream 2313105 64256926 ~ 64257433 (-)

Expression


Co-expression Network