aar2 (aar2)


Basic Information

Item Value
gene id aar2
gene name aar2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62719799 ~ 62724366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945794.1
atgatAAATCCTGAGGTGGCATGGGGGTTGTTTGAGGAGGGGGCAACCCTGGTTGTTATGAGCGTTCCCGAGGGCACAGAGCTCGGTATAAACTACAAGAGCTGGCAGGTCGGGTCTTGCTTCCAGGGGGTGAAGATGATCCCACCAGGCCTCCACTTCCTCCACTACTGTTCCTCCAACGCACCAGCTTGGGGTGAAACAGGCCCTAAAAAAGGCCTCTGAAAGAGCGAGATCTGTCTGGCCAACTGGGACCCCAAAGAGGAGGATCTGGACATCTCTGCCTCCCAGAATGAAGAGGTGGGCTGGGTCTGGGTGGGCCTACAAGACCTGGACCCTTTCCTGGGCCCCTACCAGTACGAGCTGATGTACAAATGTGTCTCCCTTACTGCCTGGGTGAACCAGGAGATAGCCACAAGGTTGCAGCTTCTCCTGGGTTGTATGTGTGCCATCAACAACCTAATCCCATAACTTTATCTCAAACACAAGACCCGTGAGGAACAGAACCTGCCTAGGAACGATAAGTGTCAGACCATGAAGGAGGAGCAGGACAGGCTGCACAGGATGAAGCCGAGAGATGGGACTGAGCTGAGGTTCTCCCCCATCCCCAGGCAGACCTAGCCTCCTGGAGCCACCCCAGCCCAGATCACTCAGTATAGCCCAGACCTGAGCtATGCCCTGGACATTCTGTTGGAGAAACACCACCAGCAGCAACCACTCAATGAGCTAGGTGAGCTGCAGTTTGCATTTGTGTATTTTCTCATTGGGACCGTGACGTACGAGGGCTTTGAGCACGGGAAGCATCTGCTGGCCCTGCTGTGTCGTAGTGAGAGCCCGGCTCTATACCTGGGCCTCATCGCTGTGCTCTACCAGCAGCTGGGAGAGATACCTACAGACTTCTCTGTGGACATTGTGTCTCAGGACAACTACCTCACCTCCACGTTACAGGACTTCTTCCAGTTTGCCAGTGGGCCTGGGGTGGACGGCACCCTGCAGAAGAGGGCAGAGAAGTTCAAGGCCCACCTGACCACTGAGGTAGATCCTGATGATTGTGACCCTGTTGTAGTGTTACTGCCTGAGAGGATCACACTGGACTGA
>TU1596066
GAACTGTCTTTCTGAttgcctctctctgtttctctcctatgcctttccctctccccagGTGAGCTGCAGTTTGCATTTGTGTATTTTCTCATTGGGACCGTGTACGTACGAGGGCTTTGAGCACGGGAAGCATCTGCTGGCCCTGCTGTGTCGTAGTGAGAGCCCGGCTCTATACCTGGGCCTCATCGCTGTGCTCTACCAGCAGCTGGGAGAGATACCTACAGACTTCTCTGTGGACATTGTGTCTCAGGACAACTACCTCACCTCCACGTTACAGGACTTCTTCCAGTTTGCCAGTGGGCCTGGGGTGGACGGCACCCTGCAGAAGAGGGCAGAGAAGTTCAAGGCCCACCTGACCACTGAGGTAGATCCTGATGATTGTGACCCTGTTGTAGTGTTACTGCCTGAGAGGATCACACTGGACTGAGCATGCTGTGAAGAACATCCAGGGTCACAGttacagtcttgtcccatccctGCAACTCGcatacggacttgggagaggcgaaggtcaagagccatgcatcctccaaaactcaaccctgccaagccgcactgcttcttgacacactgctcgcttaacccaaaAGCCAGCCACACAAATGTGTGGGAAGAAATACCATACCACTGGCGACCGAGGTCAGCATGCAGGTGCCcgaggtcagcttgcaggcgcccggcccgccacaaggagtcgctggaGCGCGATGGGACAACGACATCCcggccgaccaaaccctcccctaatccggatgtcgctgggcaaattgtgcgtcatctcccggtcacggccagctgtgacacagcgtgggatcgaacccaggtctgtagtgaagcctc

Function

symbol description
aar2 Predicted to be involved in spliceosomal tri-snRNP complex assembly. Orthologous to human AAR2 (AAR2 splicing factor).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945794.1 False 1095 mRNA 0.55 8 62719799 62723818
TU1596066 True 840 TUCP 0.56 3 62723127 62724366
Loading

Neighbor

gene id symbol gene type direction distance location
prpf6 prpf6 coding upstream 11872 62683677 ~ 62707927 (+)
LOC110492498 slc2a4rg coding upstream 542369 62068048 ~ 62177430 (+)
LOC110491140 lime1 coding upstream 666616 61946986 ~ 62053183 (+)
LOC110492502 LOC106566594 coding upstream 911594 61802244 ~ 61808205 (+)
LOC110492506 gid8 coding upstream 1120417 61596624 ~ 61599382 (+)
LOC110492516 emilin3 coding downstream 203181 62926999 ~ 62951504 (+)
slc9a8 slc9a8 coding downstream 290942 63014760 ~ 63038479 (+)
opn7b LOC106566573 coding downstream 488495 63212313 ~ 63337009 (+)
LOC110492521 LOC106566549 coding downstream 714781 63438599 ~ 63446846 (+)
mafba LOC106566550 coding downstream 821121 63544939 ~ 63548705 (+)
G1397607 NA non-coding upstream 18672 62700778 ~ 62701127 (+)
G1397502 NA non-coding upstream 143596 62519592 ~ 62576203 (+)
G1397505 NA non-coding upstream 250465 62465209 ~ 62469334 (+)
G1397474 NA non-coding upstream 296951 62422196 ~ 62422848 (+)
G1397444 NA non-coding upstream 367118 62352015 ~ 62352681 (+)
G1398609 NA non-coding downstream 3473 62727291 ~ 62728631 (+)
G1398612 NA non-coding downstream 6163 62729981 ~ 62730262 (+)
G1398613 NA non-coding downstream 6470 62730288 ~ 62730699 (+)
G1398615 NA non-coding downstream 7700 62731518 ~ 62731873 (+)
G1398616 NA non-coding downstream 9963 62733781 ~ 62734017 (+)
G1397290 NA other upstream 664626 62054882 ~ 62055173 (+)
G1397016 NA other upstream 1160798 61556531 ~ 61559001 (+)
LOC110492501 LOC106566604 other upstream 1214247 61503759 ~ 61507349 (+)
G1398625 NA other downstream 18284 62742102 ~ 62742537 (+)
G1398929 NA other downstream 614630 63338448 ~ 63339806 (+)
G1399692 NA other downstream 961278 63685096 ~ 63685474 (+)
G1399694 NA other downstream 961748 63685566 ~ 63686144 (+)

Expression

aar2(aar2) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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aar2(aar2) Expression in each Bioproject

Bar chart with 12 bars.
aar2(aar2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network