LOC110492527 (top1)


Basic Information

Item Value
gene id LOC110492527
gene name top1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64149331 ~ 64179898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947541.1
TCGGACTTAGCCCAGTGCGCAACGACTCCATTCCACAGTATCCAGACTACTCTGTCAACCTCATCTTCTTACCTTGGGCATCTCTGACTTGTGCATTTGGCTTTACAAGACAATGAGCGGGGATCACGGTGAAAGAGACTCGCAGGTCAATTCTGGGTCTCGAGCCAATGACACTCACAAACACAAGGACAAGCACAAAGAACACAGGCGCAAAGAACACAagaaagacaaggagagagatAAAGCCAAGCACAGCAACAGTGAACACAGGGAGCACTCTGAGAAGAAGCACAGAgacaaggagaaggagagggtgaagCACAGCGACGGGAGTGTCGACAGGCacagggagaaacagaaggagaaagacaaagagaagagaagagaggaaaagGTCAAATCCTCCCATGTTGAAGGCAAGCCCAAGAAGGAGAAAGAAAACGGTCATGCGAGGGAGATGTGGAACAGCCCCAGCCCTCCTGCCATTAAGAGTGAACCAGAGGAGGACAACGGCTTGTACCCCTCTCCCAAACACAACAAgactctgaagagagagagagatgaggaggaATTTGAATACAAGCCCAAAAAGATCAAGACAGAGAATGGCAAGAAGGCAAAGAAGAGAAAACAGGAAtatgaagatgaggaggaggaagagGACATAAAACCCAAGAAGAAGACAAAAGACAAGAAAGCAGGAGCGGATGGCAAGAAAGCCAAGAAGGAAACAGAGGAGAAGTGGAAATGgtgggaggaggagagatctacTGATGGCTCCAAATGGAAGTTTCTGGAACACAAGGGACCTGTTCTTGCTCCTCCATATGAACCCCTACCTGGCCATGTCAGGTTTTTCTACGATGGTAAGCTCCTGAGACTAAGTGCCCCAGCAGAGGAGGTGGCTACATTCTTTGCTAAGATGCTGGACCATGAGTACACAACCAAGGAAATGTTTAGGAAGAACTTCTACAAGGACTGGAGAAAGGAAATGACATCGGAGGAGAAGTCAAAGATCACAGATATAAACAAGTGTAACTTCACGGAGATGAGCGAGTACTTCAAGGCCCAATCAGAGGCCCGGAAACAGATGTCCAAAGATGAGAAACTGAAAATCAAAGAGGAGAATGAGCGTATCCTCCAGGAGTATGGTTTCTGTGTGATGGACAACCATAAGGAGCGAATTGGAAACTTTCGCATCGAGCCTCCCGGTCTGTTCAGGGGGCGTGGGGACCACCCAAAGATGGGCATGCTGAAACGCCGCATCCGCCCTGAAGACATCATTATCAACTGCAGCAAagACTCCAAGCACCCCAAGCCGCCCCAGGGCACGCGCTGGAAGGAGGTTCGTCATGACAACAAGGTCACATGGCTGGTGTCGTGGACTGAGAACATCCAGGGTTCTATTAAGTACATCATGCTCAACCCCAGTTCCAGAATCAAGGGCGAGAAGGACTGGCAGAAGTATGAGACAGCCCGGAGGCTGAAGAAGTGTGTGGAGCGCCTGAGGGCCCAGTACAGAGAGGACTGGAAGTCTAAAGAGATGAGGGTCAGACAGAGAGCTGTGGCTCTCTACTTCATAGACAAGCTGGCCTTGAGGGCGGGGaatgagaaggaggagggggagacggCTGATACGGTTGGCTGCTGCTCCCTGAGGGTGGAACACATCAAGCTGTACTCCAAGATGGACGATCAGGAGTACGTGGTGGAGTTTGACTTCCTAGGAAAAGACTCCATCAGATACTACAACAAGATGCCTGTGgagaagaggGTGTTTAAGAACCTGCAGCTGTTCTTGGAGAATAAGCAGCCCGAGGATGACCTCTTCGACAGACTCAATaCCTCTATTCTGAATAAGCACCTCCAGGAGTTGATGGACGGGTTGACAGCCAAAGTGTTCCGTACATACAATGCCTCCATCACCCTGCAGCAGCAGCTCAAAGAGCTCACCAGCCCGGATGAGAGCATTCCTGCTAAGATCCTGTCCTACAACAGAGCCAACCGGGCTGTGGCTATACTGTGCAACCACCAGAGGGCTGCACCTAAGACCTTTGAGAAGTCCATGCAGAACCTGCAAACCAAGATAGACGAGAAGCAGAAGCAGCTGTCGGCCACCAGGAAACAGCTGAAGGGGGCAAAGACAGAGCACAAGGCCTCACATGATGACCGAAGTAAAAAGATGGTGGAGGTGAAGAGGAAAGCGGTCCAGAGGATAGAGGAACAACTGATGAAGCTACAGATGCAggccacagacagagaggagaacaaGCAGATCGCACTGGGAACCTCCAAACTCAACTACCTGGACCCACGCATCTCTGTGGCATGggTTAAGAAATGGGACGTTCCCATGGAGAAGATTTACAACAAAACCCAGAGGGAGAAGTTTGCCTGGGCCATCGACATGGCTGAAGAGGACTACGAGTTTTAGATCCTGTTCTGTCATTTTATCCCTCCATTTTATTATTGTTTCATTTTAGAAGTATGTGTAGTTCATGTGATTGAGTCCACCATGTAAAATGGGGATCATTCTTAGCATTTGACCAGGGTCCTGTTTGAAGCATGTACTgtatccttccttcctcccttgaATTGAACGCAGATCTGATAGGTTAAAGCAGTATGGTAGAAACCTTGCTTACACGTATCCAATCACATGCAAATCAGTGATGAGGAATAAAATAGTGCATTGGCCAAGTATTCAAACAGGGATCACGCCCTGAATCTTACTGCAGTGAAAAGTATAGTAGTGTGTTTGACCAAAACATGTTAACCGGACCTTTCAACCTTATCAGCTTCTGTGATTTTCAGCTAGCTAATAGAAGAACTGTAAATGCCTGCTTTTTCTATTGATTTATGCTACAATATCTTAGTcatcaaatatattgataaattcTATATTTTGAAATATTCATGAATTAATCTAAGAATTCCCTAATGAGCAGCACCTTCATACCTTGTGGGAGGAAACAGAgcagtggtatggtgtgtgtgtgtgtgtgtgtgtgtgtttaatggtgAATGAGTGCACCATATTTGATGATTTATGAACTTTGAAATCTgtatgaagagaggagaagaacatGAGGATGATGTTTATAATGGATGATGATGAATAAGAAGCAACCAATCACTATGCTCGTGTAATTCTGGCACATAGAATGTGAATGTTTTTCATTGGTTTCATTTTGCTGTTTATTTCAGGGATGTATATATTTCTTGTCTGTTTTCAGTACGTACTGgtatgttattctgtattttgtAGGATATGTATCCTTCGTGTTGTCACCAGGCCTCCCTACCTGTAGATAGATGTCTTTTCACACGTTTTGCTGAATGAAAACTATTCCACTGTATGTTACTTGAAGAAATGgctatataaaaatgtattgttttggTGCCTGTTTTGTGTAGATACAAATGACTGCTTGCTCTTTTAAAAGGAGCAAAATAGAAATGTGTGAGGGATATGGATTTtgccaaaaataaaaacaaaataactGTTACATAAAGATCTATCATTAATTAAAGATTTGAgggtgtttcttttttttttgtactgCTGTAAACAATGTGGAAGAAATATGTCCTCTATGAAATGATTGTTTCATGTGAATAAGCATTTACGTAACATTATTCAATTAGCATTATTACCACTAAGCACTTCTTTAGCATTAATGTAACTAGTCATTAGCCTTTCTTAATAACCCTTTAGCCATTTAgttttgtttgttgtttgctAATTATATTTTGCTTTTGTAGATTATTGGAGAATAAAACATACAACTCATCA

Function

symbol description
top1 Predicted to enable DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA replication; chromosome organization; and chromosome segregation. Predicted to be located in chromosome. Predicted to be active in nucleolus. Orthologous to human TOP1 (DNA topoisomerase I).

NR:

description
DNA topoisomerase 1-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947541.1 True 3796 mRNA 0.44 21 64149331 64179898

Neighbor

gene id symbol gene type direction distance location
plcg1 plcg1 coding downstream 3667 64107995 ~ 64145664 (-)
rab5if cssa13h20orf24 coding downstream 57208 64088184 ~ 64092123 (-)
LOC110492523 dhx35 coding downstream 67722 64064250 ~ 64081609 (-)
LOC118939600 NA coding downstream 83042 64066186 ~ 64066289 (-)
LOC110492520 LOC106566548 coding downstream 719804 63424911 ~ 63429527 (-)
LOC110492529 LOC106566555 coding upstream 295 64180193 ~ 64200840 (-)
LOC110492530 ggt7 coding upstream 25894 64205792 ~ 64219320 (-)
LOC110492532 tp53inp2 coding upstream 40486 64220384 ~ 64244660 (-)
LOC110492535 samhd1 coding upstream 136322 64316220 ~ 64342275 (-)
LOC110492536 LOC106566564 coding upstream 168347 64348245 ~ 64391338 (-)
G1400528 NA non-coding downstream 1215 64147815 ~ 64148116 (-)
G1400500 NA non-coding downstream 48595 64100530 ~ 64100736 (-)
G1400499 NA non-coding downstream 50797 64098254 ~ 64098534 (-)
G1400495 NA non-coding downstream 53716 64095214 ~ 64095615 (-)
G1399974 NA non-coding downstream 101198 64047926 ~ 64048133 (-)
G1400542 NA non-coding upstream 29097 64208995 ~ 64210202 (-)
G1400520 NA non-coding upstream 80383 64260281 ~ 64260568 (-)
G1400556 NA non-coding upstream 89320 64269218 ~ 64269550 (-)
G1400639 NA non-coding upstream 223803 64403701 ~ 64403998 (-)
G1400503 zhx3 other downstream 44292 64103370 ~ 64105039 (-)
G1399367 NA other downstream 764069 63384849 ~ 63385262 (-)
G1399235 NA other downstream 857130 63199119 ~ 63292201 (-)
G1398619 NA other downstream 1413762 62734743 ~ 62735569 (-)
abhd6b LOC106566659 other downstream 3394460 60753006 ~ 60758788 (-)
G1400552 NA other upstream 77028 64256926 ~ 64257433 (-)
G1400564 LOC106597321 other upstream 104309 64284207 ~ 64284547 (-)
G1400565 LOC106575828 other upstream 105730 64285628 ~ 64285993 (-)
G1400578 NA other upstream 129985 64309883 ~ 64310456 (-)
si:ch211-117c9.5 LOC106566567 other upstream 265457 64445355 ~ 64485638 (-)

Expression


Co-expression Network