LOC110492529 (LOC106566555)


Basic Information

Item Value
gene id LOC110492529
gene name LOC106566555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64180193 ~ 64200840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945795.1
TCACTTTGTGGTTATTATTTTCATGGACAGATTTTAGGGCGGAGTAAAATCTCTAGTTTCGCCTTTTCCTCTCTTGATGGTACCAACTCCAGCTACGCAAACACCACCGCAAATAGCGTATTTTAGTAAGATAATGGTCCAGTCAAAAAACAGCATCGACAGTCCGTGGGTCGTACGCTACGTTTTAAACGCATAATATATTCACAAAGAATTACGACGTAAATATGCGAGTATCTCTTTTTGAGAATACAGAGAAAACCGAAAGAAAAAATCTCGTCAGATTCGGATTGGAAAGCCTCTCCTGTTTCGGTGTTGGTTACCACTGTTCCCCGGTTCATGTTTTGTTAGCTATTAGATATTACATCATTGGACTTTCTCCCTAATGGATTTATCTACATAAACGATTCCAGTCTTCCCCACGCCAGTCCTACTGAGAGGGGAAGATGGCACATCAACATCTCCCATTGGAGCTTCCCCAGTGGACAGCAGTCCCAGATAGGGACACTGAATCAGATTCTGACCGGGACTCAGGAGTCGGAGAAGATGCCGGCAGTCACCGTGGCAATGACATCTCGCACCGGCAGGATGGAGTTGGAGAGCGAGGCGGAGAGGGGGATTTCACAATCTTTGTTGCCTTTCGAGGAAATATGGATGACGAGGACTTACAAGAGAAACTTGACAACATCCTTAACGGGATGCCTAGTATGCTTGAACTAGATTCCGATAGACTCCAGCCCCAGCATGTGGAGCCATGGAACAGTGTGCGTGTCACCTTTAACATTCCCCGGGAAGCAGCGGAGCGCCTCAGGCTGCTGGCCCAGAACAACCAGCAGCAGCTCCGAGACCTGGGCATCCTCTCTGTACAGATAGAAGGTGAAGGAGCCATCAACGTGGCCATGGGGCAGAACAGAGGTCAGGAGGTCAGGGTGAACGGACCAATCGGCGCACCCGGACAGCTAAGGATGGATGTGGGATTCCCAGGACAACCAGGCCCAGGAGGCATGAGAATGAGCAACCCGTCGATGGTCCCCCCTGGCCCTGGTATGTCTGGCCAGGCCATGGTCCCCAGCAGCAGTGGACAGATGCACCCCAGACCCCCTTCGCAGACTGATGCAATGGACCCCATGATGTCCttacaacaacagcagcagcttcAGCATCCCCAGGCTGGCCCCCACAGCCAAGGCCCCATGCCCCCCCAGGCTGGCCCCCACAGCCAAGGCCCCATGCCCCCCCAGGCTGCTCACCACATTCAGGTCATGCAGGCAGGGCGGCAGCTGAACCCAGCCGCCCTCCAGCAGCTGCAGCAGGCTCAGCAACAGGCCCAGCTTGGTGGCCCCCGTCCCCCTTTCAATCCCTCCGGCCAGATGCCCGTACCCTCCGGCTGGAACCAGCTCCCCTCGGGGgtcctccagcctcctccagcCCAGGGAGGACCCATGGGCCCAGCAGCCTGGAGGAAGGCCCCTCCCCAAGTCCAGATGGGCCAACGTCCCCCCTCCCTGGCTACGGTGCAGACCCCCAGCCACCCTCCACCTCCGTACCCGTTTGGTAGCCAGCAGGCTGGCCAGGTGTTTAATGCTATGGGGCAGctacagcaacagcagcagtcAGGGGCTGGTCAATTTGCAGCGCCCCAACCTAAAGGTCCCCAAGGTGTGCTTGGAGGGGTGGCAGGACTCCCTAGACCTCATCTGCCTCCATCAGCAGGGCCTCAGGGTAACCTCACAGCCAAGTCCCCTGGGTCTTCGTCTTCCCCCTTCCAGCAGGGTTCTCCAGGGACTCCTCCCATGATGGGTCAGGCCCAGCTAGGCCCACGCTCTATGACCCCACAGGGTTTCCCTCAAGGGGTGGGCTCACCGGGCAGGGTGGTGATGGGACAGCAGGGTAACATGCAGCAAGGGTTCATAGGAATGCCGCAACATGGGCAACCTGGACCTCAGGTTCatcaaggaggaatgggagGCATGCCCAAACGTCTGCCCATGGGGTTCCCTAGCGTCTCAGGGAACCAGAACTTTGCCCAGGGTCAGGTGACTAGTGCCCCAGGAACCCCAGGGGGAGGAGCCAATCCCCAGCCCCAGAGCAGCCAGACTATGGCCCACACAGGAGCCCAGTCGTCAGCCTCCACCCCCAACACCATGCAGGGTCCATCCCACTCCCAGCCCAACGTCATGGGTCTCCACAGTGGCATGGCTGGCCAGCCCCAAGGCACAAACTCTGGGCCCAGTATGAGCCAGCCCCAGCCAGGCCTCCAGTCCCAGATGATGGACCTCCAGGGCCAGCCCGTGTCCTCGTCTCCCAGCCAGATGGTCCAAGGTGGGGGTCAGGGGCAGACAGTTCTCTCTAGACCCCTCAACccagggcagagaggaggcatGACCCCACCCAAACAGCTGATGCCACAGCAGGGCCAGGGCCAGATGATTGGAGGGCCGGGGCACCAGGCGATGCtcctacaacaacaacagcaaaacTCCATGATGGAACAGATGCAACAAATGCAAGGAAACAAGCAGGCGTTTGGGTTGAAAGGTCAAGCCGGGGTCATGCCAGGTCAGATGATGCGGGGTCCATCTCCTAACGTGCCCGGTAACATGGCTCAGTTCCAGCAGCCTCAGGTGGGCCAACAGCAGCAACAAATGACTCCACAGCAGCAGCATCAACAGCAGCAGCAAATGGCTCAGCTCCAACAGTTACAACAACTGCAGCTACAACAGctacaacagcagcagcaacaacagatGACCCAGCAGCCCCAACAgGTCCCCATTGGCGGCAACCCCAACCAGGCCATGGGTATGCAGGGTCAACAGATGAGACTCCCCAGTGGTCATCCTCTGGTCCAACAGCagctacagcagcagcagcagctccaacaaaaacaagccatgctgcaacagcagcagcaacacccACACGCTCTCGGGGACCCCAGCGGTGCGACAGGCGACATGGGCGGTGTCCAACAGATGCTCCCAGACATGCAGGTTCAGCAACAAGGCATGATGGGAATTGGAGTCCCTCAGCACATGCAGGTGGGCAATGGCCACTTCCCTGGTCATGGGATGAACTTCAACCCCCAGTTTGGGGGTCAGATGCCCATGGGAGGGCCGTGTGCTCAGGCAGGGGGGTTTCCAGTGAACAAGGATGTGACGCTAACCAGTCCTCTCCTGGTCAACCTGCTTCAGAGTGACATCTCTGCCAGTCAATTTGGACCTGGGGGGAAGCAGGCGGCTGGAGGACCTGGCCAGGCCAAACCCAAGAAGAAGAAACCACCACGCAAGAAGAAGCCCAAAGTAGGGGAGGGACAGCAGCCGGTCGAGGGGCTAGGGGGTCTGGATGTGGGGGCTGGCCTGGAGGACCCAGAGCTGCCAGGGCTGAGTGGGGAACAAGGAGTGGGCATGGACCCTTCCGGACCCAAACTCTCAGACTTCACCAACAGGCCTGCAGGTTTCCCAGGTCAGCCTGGAGACCAGAGAGTCCTACAGCAGGTGCCCATGCAGTTcatgcagcaacagcagcagcagcagcaacagcagcagcagcagcaacagcagcagcagcagcagcagcagcaacagcagcaacagcaacagcagcagcagcagcagcaacaacagcagcaacagcaacagcaacagcagcagcagcaacaacaacaacagcatcaaATGCAGCATATGCAACAACAGCAAATGCAACAGCTGCAACAACAGCAAATGCAACAACTACAGCAGATGCAGGGACTGCAGGTTCCTCCTGGACAGCAGCAGGGGGTGGCTGGAGCTCAGGGTCCGACTCAAGTCCAGCCACAGATGCACCCTCATCAGctacaacagcagcagcaacaacagCAGCAGATGCTGATGATCATGAAGATGCAGCAGGAGCAGGCTAAGAGCCGGATGCCCCTCCCTCCAGGCGGGCAGCACCCCCCCAGGGGCATGTTGAATCCCGGGGAGGCCCAGAGAACACCCGGTTCCCAACAGGGCAACATGCCTGTCATGATCAACCTCCAGGGGCACGGAGGAGTGCCTCCCTCTCCAGACAAACCCAGAGGGATGCCCCTCATGGTCAATCCACAGATGGCTGGGGCAGCCAGAAGGATGTCTCACCCCgaggcagggcagggtactggggctGAGGAGGCTCCTGGAGCGGCCAACTCCCTGCAAGACAGACCCGGGGGCCAGGAGATGGGGATGCCGCCTGGTAACGGGGCCCAACAGATGGTGGTGAACCAGGGCCCCAATGCCCACATGATGAAGCAAGGCCCAGGCCCCTCGTCCCAGCACCCTGGAGCCAGCCCCCAGCAGCAGATGCCCCCTCAGCCCCAGCAGGGTGGCCCCATGCCAGGCCTCCACTTTCCTAATGTCCCCACAACTTCCCAGAGCTCCAGGCCCAAAACACCCAACCGAGCCAGTCCCAGGCCCTACCACCATCCTCTCACCCCAACCAATCGTCCTCCCAGCACTGAGCCCTCTGAGATCAACCTCTCCCCTGAGAGGCTGAATGCCTCCATCGCAGGCCTGTTCCCCCCCAAGATCAACATCCCTCTGCCCCCCAGGCAGCCCAACCTTAGCCGGGGCTTTGACCAGCAGGGTGGGCTCAACCCCACCACTCTCAAAGCCATAGGGCAGGCCCCTCCCAGCCTAACTTTGCCCAGCAACAACGGAAGTGGTGTAGGTAACTCTAACAACGGTCAGCAGTCTTTCCCTACAGGCAGTGGAGCTGCCAACTCGGGCCAGGGCAAACCGGACAAGCAGCCTGGTGGAGGTCAGGCTAAAAGGGCCAATCCCAGTAACGGCCGCAGATCCAGCCCGGCCTCCAGCCGCAAAGTCACTAACCCCAGCTCAGGGAGGCAGAAGTGGACCAAAATCACCCTTGCATCCCCTTCTCACCAGCAACAGATGGTCAACCCCCAGACAGGGCATACCATGATGCTGAGCCCCACCCCAGTGCCTCCTAGCCCAGTCACTCTTCCACCAGCGGCGGGGGTGGGCCTAGAGCCCCAGCAGATCCAGACCCCCTTCCAGGTGATGCAGGGTAACCCAGCTGAGATGCCCAGGGAAGGGCAGGGAATGGCAGGTGTAGAGCACCGGCAGATGCCCCAGCCTCTGAGGGAGCTCTCCGCCCCACGGATGGCTAGCCCCCGTGTAGCCACTCCTCAGGATGCTAAAGCTGGGCTGGAGCAGACAGTGGTGATAGTGGAGCGGCAGCCTGTACAGAGCACTCCTCAGCAGGTGTCTGGATCTGaggcctctccttctctcagggATGCGCCTTCCTCCCTCAACCAGCTGCTGGATAACGCAGCCACCCCCAGCGTGCCTCCCAGGCCCACTCTGAGTGCTCCAGATGGGGATGCTGCCTGCAAGGAGAGCTCTAAAGCCTCCATAGTTTCAGAGAACCCATCCAGTGTTTTTCAGAGCTCGAATATGGGGGCTACCACtgttgctactactgctgctgtgaACGAGCCAGAAGCGAAACCCAAGCCTAGCTCAACCCCCAGCCCAAAACTCCCAAATCCAGTCGGTAGTCCTAACCTGCAGCGCAATGCAAATACCAATCTGAATGCTAATCCCGGCCCTAGCCCCAATCTTAACCCAACTGACAGCCCCAACCTAAACTCTAACTCTAGCCCCAGCGTCAAGCCTAGCACCCCTAGCCCTAACTTAAACCCTACCATTACCCACGGCCCTACTCTAAACCCTACTCCTAGTCTTAGCGTCAGTGTGGGCGCCAGCGTCAGTCACAGTAGCCCCATCCCCAGCATTACCTCCAGCCCcaaacctaacccaaaccctgCCGTTGGCCCCAAACCTAACCCTGCCATTAGCCCcaaacctaacccaaaccctgCCGTTGGCCCCAAACCAACCCCCAGCCCTAAACCCTCGACCAATGTCCCCACTGTCCTGCAGATCCCTGCATCATCCGCCACCATCTCCCCCAACCAGATCAGTTACACCCCTGCACCCACCCCCCAGGCCCCCCCAGCCATCATCTCAGCTATGGTGGCAATGCCCAAAAAGAACATCAGACCCCAGCAGTCCAGCCAGCAGACCCGTGGTCCCCACCCCCAGTTTATCACCACTCCTGTGTTTAACACCGGTACCCCCATCTTCCAGGTCCCTACAGTGTCTGTGGCCCCCAATGCCACGGTAGTGTCCCAGCCAGTCACCATGGTAAAGCCCATACAGGTGTCCACCACTAACATCCAGCTCACTGCTGCTCCAACCCAGGCCCAAGCCCCGGCCTCGActcaggctgctgtggtcagtgtGGCTAGCTACCAGCCTGCCCGAACGCTAGTTGGGCAGGTCCAGATGGCCACTAGACGTGCTTCCCCTGTCCCTGTTAGTACTCTGCCTCGTCCTCCGCAGCAAAGCCCTGGCACTCCCAAGTCGGAAACTCCAGGTGAGGCGCCCCCTGGCCAGAAATTGAGCCCACCTGTTGGGCAGCCATCCCCCCATCCCAGCCTCTCTCCCACAGCCTTGGCGTTTGCCTCGTCTTCCGTCCAACAGCCCCTTGCGTCCCCTCCTCCATGCTCCAGTCCTGGTGCCCCAGCCAGCACCCGGAAGAGCCCTATGTCCACCCCCTTGCCTGCCCAGGGAAAGCCTGCCCAGGCTCCTGGCTCTGCACCACCAGTGGGTAATCGACCAGATTACCAGCAGGTTGCTGAAGCACGGGCTGCCCAACCTTTAGAGGGGACTTCCCAGCCCCAGAGGGGGCCGAACTGGGCTGTGCCCCCTCACGCCTTCCCTCCACCCCCTGCATCTGTCATCCAGACTCGGACCACAGTGTCTGGAGCACAGACTCGGACCACAGTGTCTGGAGCACAGACTCGCACCACAGTGTCTGGAGCACAGACTCGGACCACAGTGTCTGGAGCACAGACTCGGACCACAGCTGCTGCTGTTCCTCTGAAAGTCACCACTCCTCCTCCAGTATCAGCGCCAACTCCTGTCCTTGCGCAACCTACTGCACCAGCCCAGTCCTGTCTTCCTGCCTCTActactaccacccctcccccagtgTCAGTCCCTGTCCCCACCCGAACCCCTACTACTGCCCCTGTTCCTACCCCTGCTCCTTCTTCAGCCTCAGTCCCAAGACCATCCCCATCCACCTCTCCTGTTGCTGGTGTCCCTGGACCCTCCAACCCCCCCGGTGACTCCCCAGCCATATCCTCCCTAGTGGCCCCTACCCCTACTGGGGCTCAGCCTGCCCCCACAGCCATGGAGcctcccagccagccagccccacTAGAGCCCCCAGCACCTGCAGGCAACACCCCAGTGTCAGTCCAACATGAACCTCTACAGCAAGAGGAGCCTGCTGCTACGGAGAAGACGGCAGAAGTTGCCACAGTAACTGAGCAAGGATGGGCAAAGAAAAGAAAGACTCCTGTCAACTTAGTCCCAAGGGCTGCCGTGGAGAAGCCGAAAGGTCCCAGCAGACGGAGCTCGCGGGCtgaaaaggaggtggaggaggaaacgGTGGCAGACAGCGCACAGAGGAAGAGACCAGCCAGGCCTGGAGCCAGCACTGTGGTTGCTGCTAAAGAAACCGGTGCCAGTCCTACCCAGGCTAAGAGAAGGAAGTCTAAGTGACCACAGTAGTGAAACCCTGTgaactgtaaatgtgtttttctgTCAATCATTCAATGACTTTATTTTCTCCCAGATTATGAATTCACAATGGAGAAAATAACAATGTACAGATAATTGTTTTTAAAATAATTATGTTGATGTTTTGTCCCAGCTATCATGTGAGGTtgtagctagtgtgtgtttgtgcgtgcgtgaaTGTGTTTAGTTTTTAAACAATTATGCTGGATTAATCATGTGAAGACTGATAATTGAAGGTGTCTCAATTGTATAATTATGTTGTGAAACTTAATAAAGTGTTCTGCTACTTAA

Function

NR:

description
nuclear receptor coactivator 6-like isoform X4

GO: NA

KEGG:

id description
K14971 NCOA6, ASC2; nuclear receptor coactivator 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945795.1 True 7931 mRNA 0.58 20 64180193 64200840

Neighbor

gene id symbol gene type direction distance location
LOC110492527 top1 coding downstream 295 64149331 ~ 64179898 (-)
plcg1 plcg1 coding downstream 34529 64107995 ~ 64145664 (-)
rab5if cssa13h20orf24 coding downstream 88070 64088184 ~ 64092123 (-)
LOC110492523 dhx35 coding downstream 98584 64064250 ~ 64081609 (-)
LOC118939600 NA coding downstream 113904 64066186 ~ 64066289 (-)
LOC110492530 ggt7 coding upstream 4952 64205792 ~ 64219320 (-)
LOC110492532 tp53inp2 coding upstream 19544 64220384 ~ 64244660 (-)
LOC110492535 samhd1 coding upstream 115380 64316220 ~ 64342275 (-)
LOC110492536 LOC106566564 coding upstream 147405 64348245 ~ 64391338 (-)
LOC110492537 LOC106566565 coding upstream 190788 64391628 ~ 64397409 (-)
G1400528 NA non-coding downstream 32077 64147815 ~ 64148116 (-)
G1400500 NA non-coding downstream 79457 64100530 ~ 64100736 (-)
G1400499 NA non-coding downstream 81659 64098254 ~ 64098534 (-)
G1400495 NA non-coding downstream 84578 64095214 ~ 64095615 (-)
G1399974 NA non-coding downstream 132060 64047926 ~ 64048133 (-)
G1400542 NA non-coding upstream 8155 64208995 ~ 64210202 (-)
G1400520 NA non-coding upstream 59441 64260281 ~ 64260568 (-)
G1400556 NA non-coding upstream 68378 64269218 ~ 64269550 (-)
G1400639 NA non-coding upstream 202861 64403701 ~ 64403998 (-)
G1400503 zhx3 other downstream 75154 64103370 ~ 64105039 (-)
G1399367 NA other downstream 794931 63384849 ~ 63385262 (-)
G1399235 NA other downstream 887992 63199119 ~ 63292201 (-)
G1398619 NA other downstream 1444624 62734743 ~ 62735569 (-)
abhd6b LOC106566659 other downstream 3425322 60753006 ~ 60758788 (-)
G1400552 NA other upstream 56086 64256926 ~ 64257433 (-)
G1400564 LOC106597321 other upstream 83367 64284207 ~ 64284547 (-)
G1400565 LOC106575828 other upstream 84788 64285628 ~ 64285993 (-)
G1400578 NA other upstream 109043 64309883 ~ 64310456 (-)
si:ch211-117c9.5 LOC106566567 other upstream 244515 64445355 ~ 64485638 (-)

Expression


Co-expression Network