LOC110492535 (samhd1)


Basic Information

Item Value
gene id LOC110492535
gene name samhd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64316220 ~ 64342275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566937.2
TTCGTCTCTTTATACGATCTTTGATCGCTCCTCCCTCCTTCTGGTCTGTCAGCCCAGTAAAAAAGGTACCTCGTTTCGGAAAGAGAACCCATTTAGTCGACAATTTAGTAGAACGCACCATAGTTTAAAAATAGTTCGCGCGGAAAGAAGTCCCCAGTACCGGCTCTACTGTGTTACTGGCACCGTTCAATCACCGATCATTATGGATGTTCGAAAGCGTCCCAGAGAAGATTTGCCGAATACTAGTTGTAGTGATCAGTTCAAACCCCCGGAGAAGCGGGATTCTGAGGCGGCGTTGCAGGATTTCGGGCAGTGGGGTGTCGAGGACGTTTGTAGATACCTGCGTCAAGAAGGTCACTTGAAATGGGAGGATGCATTCAGAGAGCAAAAGATGACAGGAGTGGGATTACGATACCTCACAGAGACACTTCTGGATAAAATGGGTATAGTgcCTCTAGGCACCCGGTTGCAGATCCTGCACAGTCTGAGGAAGCTGTGGCAGATGGCAGCAGTGACCACCAAGGTGTTTAATGACCCCATCCATGGCCATGTAGAGATGCATCCTCTGCTGGTCCGTATCATGGACACCCCTCAGTTCCAGAGGCTCCGCCACATCAAGCAGCTGGGAGGAGCATATTTCGTCTTCCCTGGGGCCTCCCACAACCGCTTCGAACACTCCATAGGGGTGGGCTACCTAGCAGGTCGGCTGGTCCAGGAGTTGAATGAGAGACAACCGGAGCTCCTCATCTCCAGTAGAGACATCCTGTGTGTCCAGATTGCTGGGCTCTGTCACGACCTGGGTCATGGTCCTTTCTCCCATATGTTTGATAGCATGTTCATCCCCAAAATGCATCCAAAGTCCAAGTGGAAGcatgaGAATGCGTCACTTGCGATGTTTGACCATCTGGTGTCTGTGAATGCCTTGGAGCCAGTGATGAAGGATCATGGCCTGGTCCTACCTGATGACCTGGTCTTCATCAAGGAACAGATTGCTGGACCACAGAACACTGTCCCTCTCAGACAGGGGTGGCCTTATAAGGGCCGTCCAGAGGATAAGTCTTTCCTCTATGAGATTGTGGCCAACAAAATGAGCGGCATCGATGTGGACAAGTGGGACTACTTCGCCAGGGACTGCTACCACCTGGGCATCCCGAATAACTTTGACTACCATCGCTTCCTCAAGTTTGCTCGTGTGTGTGAGGTAGATGGGAAGAAGCAGATCTGCACCAGAGAAAAGGAAGTGGGTAATCTGTACGACATGTTCCACACACGCAACTACCTCCACAGAAAAGCCTACCAGCACAAAGTGGGACACATAATAGAGACAATGATCACAGAGGCCTTCATCAAGGCAGAACCCCACATCCAGATTCAAGGTTCAGAGGGAAAAATGTTCACCATCTCCACAGCAATAAATGACATGGAGGCCTACACTAAACTCACTGACCATGTGTTTGAGCAGATCCTGTACTCGTCATCCTCTGAGCTGGCAGAGGCCAGAAAGATCCTCCACAACATCACCTGCAGAAACCTCTACAAGAATATGGGACAGACCCAAGCCAAGAAACGTGTGGAGGtctcacagGAACAGCTCCAGAAATGGGCAAGTGAATTGGCGACGTGCAGGCCTGAGAGCGACCTCCAGGGCGTCACTCTAGAGCCAGGGGACTTTGTAGTCAATATCATCAACATGGACTGGGGTATGAAGGAGAAGAACCCCATCAACAACATGCGTTTCTACTGTAAGAATACCCCAACCAAAACCACCCAGATCAGCAGGAACCAGGTGTCTCAGATGCTGCCAGATCAGTTTGCTGAGCAGCTGATCAGGGTCTACTTTaagaagagagatgagaagacCGTGGAGGCAGCTAAGATTAACTATGTCAAGTGGTGCATGGACAACAACTTCTCCAAGCCTCAGGACGGAGATTCGATTGCACCGGAGCTCACCCCTCTGAAGCGAAACTGGGCCCACAATGATGATGAGAACGATGATGAATTGGATAGCCAGGGAGGAAGAAGCAGGGCTGCAGTCAACATTGGACAACAGAAGGCAAAAGCCAGACTCTTTTAGGAGGATGAGAAAGAGGATCTGTCTGTTTACTTCTTATGGCAGTTGTCACCAATCCTGGTTCTGGAGAGCTACAGGGTATGCAAGGTTTTGTTCcaacccagcactaacacacctgattcagctagTCTAGGTTATAATGATTCATTGAGTAGCTGAATCAGTCGTGTTGATGCTGGGTTGGAACAAACCGTTGCATACCCTGGTGCTCCCTAGGACTAGGGGTTGGGGACCAACGATGGTGGATAAATTATGTCTTGCTCAGGCCATTTACCGTTGAAAGACAATTGTCATTGTTCTCgtcttaaaggaaaactccacccaaaatgCTATTTTCATATTtgtcattagtccattgttgatacgGCACCAATTGTTTTGCATTTCTCCAATCAAGTTAAAGATATCTAACTTtcgaaatacagaaatacagctgTATGATTTATTTTGCATCGTATGATACAAAATGCAGCATCATACTggctgtattttgaaagttatgcAGTATATCTTGAGAACTTGATTGCTGacttgcaaaacattttgggagtaTATCAACaatggtctaatgaaacaaataccaaagtATAGTTTTTGGGTGGACATCAATGggatagcagctgggtctggtctgcttaGTTCATTGACTCTATATGAACCAGAGAATATTAGGGAGTTGGAGATCAGTGTCTAGGAGCAACGTCCAGAAGAAGACCTTTGGCTCAGGGTTCTGTTCACGCTCCGTTCTGTTAGGGATTATATCATATAGTCTTTATTTTATTCGCTTTTTATCTTGTTTTATTTTAAGCATATGTTATAGGTTAAGTGTGGTTATTTTGCCTTATTTAATTATCGATGTCATTGGTATTGCATTGTGTGAGTGTGAAAATACTTCCTGACTTTCAGATTCCTGACTTTTCTCTGAATATGCATCTTGATGTGCCATGATCATACAGGCATCTTTCAGATAGCCTAGCAGCAACTGTTACATATTTATACAACCTGATGAAAGTTGTTCTCAAACCCTTGTGGGACAATCATGCTTGTTTTACATTGTAGCTGAGTATTTAATTGTTTCATGGTATTGTATCACCATTGTTTGTCTTTCAGGGCATTGTCTTTCTTATAAGCATGGTTTCTACAAGGTTTTAGTTTATATATAGGCACCCACCATAGCTAGCCTGGTCGTtgacatacatacagtatgtttggtGAGGTAGGGGTTGACTAAAGCACATAAAGATCAGAGATCTGTCTAGTGTATATTTGATTATTTTCCTAAAAGTGGCCACTTGAACTGACAGAGATGGGTCACAGTGTGCAGTGCAGtgtgggtagtgtagtcagtTATGCATACACAATGCATGCAGTGTGTGATTCAGACCTGAAACTTTTTTGGTTTTGATTTGGACTGTTTCTGATTAGTGTGGTGTTTCTCTAAGTGCTGCGGTATCACATTGTGTCTTCATCCATGTTACCTTTGTGAGTCTGGCTGTTCTCTTCATTtaaacaatataaacacaatgtTTACCATACAGTCTGCATCAAGATGAGTCCACAGCTGTTGCTCATTGATGGGATGTTTGTTGATTTAATTATGTGCTtcgttttaaaaaatatataatgaaagACAAATCGTCGAGACAGTCAACGTTTGAGGGATTTTATGATACAGAGTACAACTGTCAAAAGCTGTGAAATACAACTATTTTCTCTGCCTGGC
>XM_021566938.2
TGGGACTGTCAAATTACTTTGCATCTTCGTCTCTTTATACGATCTTTGATCGCTCCTCCCTCCTTCTGGTCTGTCAGCCCAGTAAAAAAGGTACCTCGTTTCGGAAAGAGAACCCATTTAGTCGACAATTTAGTAGAACGCACCATAGTTTAAAAATAGTTCGCGCGGAAAGAAGTCCCCAGTACCGGCTCTACTGTGTTACTGGCACCGTTCAATCACCGATCATTATGGATGTTCGAAAGCGTCCCAGAGAAGATTTGCCGAATACTAGTTGTAGTGATCAGTTCAAACCCCCGGAGAAGCGGGATTCTGAGGCGGCGTTGCAGGATTTCGGGCAGTGGGGTGTCGAGGACGTTTGTAGATACCTGCGTCAAGAAGGTCACTTGAAATGGGAGGATGCATTCAGAGAGCAAAAGATGACAGGAGTGGGATTACGATACCTCACAGAGACACTTCTGGATAAAATGGGTATAGTgcCTCTAGGCACCCGGTTGCAGATCCTGCACAGTCTGAGGAAGCTGTGGCAGATGGCAGCAGTGACCACCAAGGTGTTTAATGACCCCATCCATGGCCATGTAGAGATGCATCCTCTGCTGGTCCGTATCATGGACACCCCTCAGTTCCAGAGGCTCCGCCACATCAAGCAGCTGGGAGGAGCATATTTCGTCTTCCCTGGGGCCTCCCACAACCGCTTCGAACACTCCATAGGGGTGGGCTACCTAGCAGGTCGGCTGGTCCAGGAGTTGAATGAGAGACAACCGGAGCTCCTCATCTCCAGTAGAGACATCCTGTGTGTCCAGATTGCTGGGCTCTGTCACGACCTGGGTCATGGTCCTTTCTCCCATATGTTTGATAGCATGTTCATCCCCAAAATGCATCCAAAGTCCAAGTGGAAGcatgaGAATGCGTCACTTGCGATGTTTGACCATCTGGTGTCTGTGAATGCCTTGGAGCCAGTGATGAAGGATCATGGCCTGGTCCTACCTGATGACCTGGTCTTCATCAAGGAACAGATTGCTGGACCACAGAACACTGTCCCTCTCAGACAGGGGTGGCCTTATAAGGGCCGTCCAGAGGATAAGTCTTTCCTCTATGAGATTGTGGCCAACAAAATGAGCGGCATCGATGTGGACAAGTGGGACTACTTCGCCAGGGACTGCTACCACCTGGGCATCCCGAATAACTTTGACTACCATCGCTTCCTCAAGTTTGCTCGTGTGTGTGAGGTAGATGGGAAGAAGCAGATCTGCACCAGAGAAAAGGAAGTGGGTAATCTGTACGACATGTTCCACACACGCAACTACCTCCACAGAAAAGCCTACCAGCACAAAGTGGGACACATAATAGAGACAATGATCACAGAGGCCTTCATCAAGGCAGAACCCCACATCCAGATTCAAGGTTCAGAGGGAAAAATGTTCACCATCTCCACAGCAATAAATGACATGGAGGCCTACACTAAACTCACTGACCATGTGTTTGAGCAGATCCTGTACTCGTCATCCTCTGAGCTGGCAGAGGCCAGAAAGATCCTCCACAACATCACCTGCAGAAACCTCTACAAGAATATGGGACAGACCCAAGCCAAGAAACGTGTGGAGGtctcacagCTCCAGAAATGGGCAAGTGAATTGGCGACGTGCAGGCCTGAGAGCGACCTCCAGGGCGTCACTCTAGAGCCAGGGGACTTTGTAGTCAATATCATCAACATGGACTGGGGTATGAAGGAGAAGAACCCCATCAACAACATGCGTTTCTACTGTAAGAATACCCCAACCAAAACCACCCAGATCAGCAGGAACCAGGTGTCTCAGATGCTGCCAGATCAGTTTGCTGAGCAGCTGATCAGGGTCTACTTTaagaagagagatgagaagacCGTGGAGGCAGCTAAGATTAACTATGTCAAGTGGTGCATGGACAACAACTTCTCCAAGCCTCAGGACGGAGATTCGATTGCACCGGAGCTCACCCCTCTGAAGCGAAACTGGGCCCACAATGATGATGAGAACGATGATGAATTGGATAGCCAGGGAGGAAGAAGCAGGGCTGCAGTCAACATTGGACAACAGAAGGCAAAAGCCAGACTCTTTTAGGAGGATGAGAAAGAGGATCTGTCTGTTTACTTCTTATGGCAGTTGTCACCAATCCTGGTTCTGGAGAGCTACAGGGTATGCAAGGTTTTGTTCcaacccagcactaacacacctgattcagctagTCTAGGTTATAATGATTCATTGAGTAGCTGAATCAGTCGTGTTGATGCTGGGTTGGAACAAACCGTTGCATACCCTGGTGCTCCCTAGGACTAGGGGTTGGGGACCAACGATGGTGGATAAATTATGTCTTGCTCAGGCCATTTACCGTTGAAAGACAATTGTCATTGTTCTCgtcttaaaggaaaactccacccaaaatgCTATTTTCATATTtgtcattagtccattgttgatacgGCACCAATTGTTTTGCATTTCTCCAATCAAGTTAAAGATATCTAACTTtcgaaatacagaaatacagctgTATGATTTATTTTGCATCGTATGATACAAAATGCAGCATCATACTggctgtattttgaaagttatgcAGTATATCTTGAGAACTTGATTGCTGacttgcaaaacattttgggagtaTATCAACaatggtctaatgaaacaaataccaaagtATAGTTTTTGGGTGGACATCAATGggatagcagctgggtctggtctgcttaGTTCATTGACTCTATATGAACCAGAGAATATTAGGGAGTTGGAGATCAGTGTCTAGGAGCAACGTCCAGAAGAAGACCTTTGGCTCAGGGTTCTGTTCACGCTCCGTTCTGTTAGGGATTATATCATATAGTCTTTATTTTATTCGCTTTTTATCTTGTTTTATTTTAAGCATATGTTATAGGTTAAGTGTGGTTATTTTGCCTTATTTAATTATCGATGTCATTGGTATTGCATTGTGTGAGTGTGAAAATACTTCCTGACTTTCAGATTCCTGACTTTTCTCTGAATATGCATCTTGATGTGCCATGATCATACAGGCATCTTTCAGATAGCCTAGCAGCAACTGTTACATATTTATACAACCTGATGAAAGTTGTTCTCAAACCCTTGTGGGACAATCATGCTTGTTTTACATTGTAGCTGAGTATTTAATTGTTTCATGGTATTGTATCACCATTGTTTGTCTTTCAGGGCATTGTCTTTCTTATAAGCATGGTTTCTACAAGGTTTTAGTTTATATATAGGCACCCACCATAGCTAGCCTGGTCGTtgacatacatacagtatgtttggtGAGGTAGGGGTTGACTAAAGCACATAAAGATCAGAGATCTGTCTAGTGTATATTTGATTATTTTCCTAAAAGTGGCCACTTGAACTGACAGAGATGGGTCACAGTGTGCAGTGCAGtgtgggtagtgtagtcagtTATGCATACACAATGCATGCAGTGTGTGATTCAGACCTGAAACTTTTTTGGTTTTGATTTGGACTGTTTCTGATTAGTGTGGTGTTTCTCTAAGTGCTGCGGTATCACATTGTGTCTTCATCCATGTTACCTTTGTGAGTCTGGCTGTTCTCTTCATTtaaacaatataaacacaatgtTTACCATACAGTCTGCATCAAGATGAGTCCACAGCTGTTGCTCATTGATGGGATGTTTGTTGATTTAATTATGTGCTtcgttttaaaaaatatataatgaaagACAAATCGTCGAGACAGTCAACGTTTGAGGGATTTTATGATACAGAGTACAACTGTCAAAAGCTGTGAAATACAACTATTTTCTCTGCCTGGC

Function

symbol description
samhd1 Predicted to enable several functions, including dGTP binding activity; dGTPase activity; and nucleic acid binding activity. Acts upstream of or within regulation of innate immune response. Predicted to be located in site of double-strand break. Predicted to be active in nucleus. Used to study Aicardi-Goutieres syndrome. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome; Chilblain lupus; and acute myeloid leukemia. Orthologous to human SAMHD1 (SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1).

NR:

description
PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X2

GO: NA

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566937.2 False 3797 mRNA 0.45 16 64316220 64342250
XM_021566938.2 True 3816 mRNA 0.45 16 64316220 64342275

Neighbor

gene id symbol gene type direction distance location
LOC110492532 tp53inp2 coding downstream 79721 64220384 ~ 64244660 (-)
LOC110492530 ggt7 coding downstream 96900 64205792 ~ 64219320 (-)
LOC110492529 LOC106566555 coding downstream 115380 64180193 ~ 64200840 (-)
LOC110492527 top1 coding downstream 136322 64149331 ~ 64179898 (-)
plcg1 plcg1 coding downstream 170556 64107995 ~ 64145664 (-)
LOC110492536 LOC106566564 coding upstream 5970 64348245 ~ 64391338 (-)
LOC110492537 LOC106566565 coding upstream 49353 64391628 ~ 64397409 (-)
si:ch211-117c9.5 LOC106566567 coding upstream 104523 64445355 ~ 64485638 (-)
LOC110492541 LOC106566539 coding upstream 149108 64491383 ~ 64514012 (-)
parapinopsina LOC100135831 coding upstream 303126 64645401 ~ 64650567 (-)
G1400556 NA non-coding downstream 46670 64269218 ~ 64269550 (-)
G1400520 NA non-coding downstream 55652 64260281 ~ 64260568 (-)
G1400542 NA non-coding downstream 106018 64208995 ~ 64210202 (-)
G1400517 NA non-coding downstream 117922 64128353 ~ 64198298 (-)
G1400639 NA non-coding upstream 61426 64403701 ~ 64403998 (-)
G1400652 NA non-coding upstream 87435 64429710 ~ 64430791 (-)
G1400655 NA non-coding upstream 107127 64449402 ~ 64450195 (-)
G1400670 NA non-coding upstream 126786 64469061 ~ 64469500 (-)
G1400676 NA non-coding upstream 139581 64481856 ~ 64482510 (-)
G1400578 NA other downstream 5764 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 30227 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 31673 64284207 ~ 64284547 (-)
G1400552 NA other downstream 58787 64256926 ~ 64257433 (-)
G1400503 zhx3 other downstream 211181 64103370 ~ 64105039 (-)
G1401617 NA other upstream 1293207 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 1378232 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 2083276 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 2142626 66484901 ~ 66494667 (-)

Expression


Co-expression Network