LOC110492536 (LOC106566564)


Basic Information

Item Value
gene id LOC110492536
gene name LOC106566564
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64348245 ~ 64391338 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566940.2
CAGCTGGCATCGGTATGGACTGGGGCGGATCCACCAACCCAATGGGACCATGTGGTTCTCACTGCTGATTTGTTGTGATTTGTTTTCagatagaggaaagagagagagcgagtatgAACAGCAGCATAAGAACGGGAGGCGAGACAAATGGAACAGGGGTTTCCCTAATGAGCTGATGTCTGGGATTATTAACCGAATACCCCTTTGACATTTAATGTCCTCAAGCAGAGTGAATCATTGATAGTAGCCTGGTGTTTTGTTGCTTCATCTATCTGCTATGAAACTAAGCAATTTGAGGCTTCCTTTAGTTGTTTGTAGGGATAAAGAAATATAACAAATCCTGTGTCAGTTTATGAAATATTTCCGCTGCCAAGTAGGCAACTAGTTGCGACAGGTGCGCACTGAGCGAGACCAGGATGGGCAGGCGGGAAATTCGCAGAGACCACCGCAGCAGCGTGATGAGCACTGAAGACCGGTCAGAACGGAGGGACAACATGCAGGACACGGCAGATACCGAAACCGGCGATGATGGCTCCGAGACCTCAAGTCTGGACAGCCGTCGTCTCCTCAGCGGGGACAAGCGCCCCAGCCACACCGGGGAAAGTGGCTCTATGCCGGTGGAAGTGAAGAAgcaccaacataaacacaattTGAAACACCGCTACGAGGTATTGGAGACGCTGGGAAAAGGCACCTACGGGAAAGTGAAGAGGGCGGTGGAGAGAACGACCAGGAAGACAGTGGCCATCAAGTCGATTCGTAAGGAGAGCATCACTGATGATCTGGACAGAGTTCATatccagagagagatagaaatcaCCTCCGCCCTCAAACACCCCTACATCATACGCTTCCACGAGgTGTTTGAGAGTCGTGATAAGATAGTGATAGTGATGGAGTACGCCAGCAGAGGGGAGTTGTATGACTACGTCAATGAGAGGAGGAGACTGGTGGAGACAGAGGCCAGAGACATCTTCAGACAAATCACCTCCGCCGTGCACTACTGCCACAcgAATGGTGTGGTCCATCGAGATCTGAAGCTGGAGAACATTCTACTAGACCAGGACCTGAACGTCAAGctGGCTGACTTTGGCCTGTCCAACCGCTTTAAGAAGGACAATTTGCTCCAGACGTACTGTGGGAGTCCTCTCTACGCCTCCCCAGAGATAGTCAAGGGACTGCCCTATCATGGCCCAGAGGTGGACTGCTGGGCAATGGGAGTCTTGCTGTATGCGCTGGTGTACGGCAGTATGCCGTTTGACGGGGCCAGCTACAGAGCGCTCACAGAGCAGATCAGCCAGGGACGCTACCGCAGACCAAACCCTCCCTCAGACGCCTGTGCCCTGATTGACTGGCTGCTGACGGTGCGTGTAGAGGAGAGGGCCACAGTGGAGGACATAGCCAACCACTGGTGGGTCAACTGGGGCTATGAGGACAGTGTATGTGACTGCCCCTCATCCCCCCACCAGGACTGCCCCTCCCCGCTGCTCGCACGCTACATCGACTGGCAGAACCGGGTTGCCACGGCAACCAGTTGCCCGAGCTCTGACCCTTCCGCTCACCCTCACCCGTTCTActtcagcttccccctgaagGGTGATCGCGGGGGAGGGGGGAGGTCGAGGGGGGAGAGGTCAAGTTTAAGGAAGTCGCGTAAGGTGAACACTATTCCCCAGAATGCACTGGGAGCATGTAGTCCAGTTTGTACGACAACtgccatcaacaccaccaccaccactgccgCCTCCATTTCCTCTTCCTCCAAAGGCCAGGTCGAGAGGAAGAAACCAAAGGGGATTCTGAAACCCCAGCGGAGCTTTGATTCAACCTTCCTGCCCTCTCCTAGAATGATGGGGGAGAACTCCTCCGCCAAGCCCTGCAACCTGCCTCCCCAGCCCCacagagctcacacacacactcactcacacagtgaTGGTCTGTCCACAAGCCTGCCTGCCCCCTCTAtgttctcccattcctcctccaaGATGCCCAAGAAGGGGATCCTAAAGAACCTGTATGGTGGTGAGTCAGGGTACTGCTCATCCCCAGAGAGAGGTATGTCTGGAGCGGGCACAGGAGTACGAGGTAGAGGGGTTGATGGAGATATGTGCTGCTCTTACGATCCCCACTCCCGCTCACCCAGCTCAGAGCACAGTCCAACAATGCGGACGGAAGCAGTGAGAAGGAGGAAAGGCATTCTAAAGCGCAATGGCAAGTTCTCACACAGCCTGGACCTCCCTGATGCCCTTCATCCCTCCTTATCCTCAGCTCTGGCCCATTTCCCTGAGGCGCTGCACCAGCTCCATCAGGCTTCCGGGGGCAGCAGACCCCCCAGCGTGGTGAGTGAggacagcctcctctcctccGATTCTTTTGACCTGCTGGACCTCAGCGCCCAATCACGCCGCAGGATCTTCTCCCGGGGCACCCAATGCAGTGCTTGCAGCTCAGAAGAGGAACTTGAGGACCCGGTAGCAAGGGCGGCAGACGGGATTGGATTAGGAAGAGGGcggggcagagaggaggaagatgagatgtcattggaggagagacaggagatgcTAAGATAAGATAAAGGTTGTGTTCCCCTGCTCAACCAATGGTTGCATGCCACATCATCGACTGTCCCGTCGGgcaccagattgctataacataggATGTGGGTAGCTGATacataaaatacctatccaggtgttgtaagatctggcatgagTCATTAACGCCTGGGTAGAGCAATGTGCCCACAATATGATAAGCCCAAGAGATGACTGGACGCTTGTAATATCAGTTACTGGTGCTGTCTGATAGGCCCAAATTACTGGCAGACTTTGTCTTTGCTAACCAAATGACAAATAACAATAAAGAATTCAGCGGAAGCACCTAGACAACCTGCAGTGATCGTATGTTGAAGGAAGGTCATCAAGAAATTGTTCATTTCATCAAGATCAGTTACTGATTGGAATGGATTGAGACTGCTGTCCTAGTGATGGGATAAAACACTGTTGGATTCTTTAACTGTGTGAATGAAGCCATCGCTGACTTTAAGGACTCCTATGTGAACTAACAAAACACTGTACAGGAGACCACATGgcattcccaatctggccctcataccatcatggccatcAAATCATCCCCTACTTCCAGTTGGATcattcatcccctctcctctcccctgtaactattccccaggtcgttgttgtaaatgagaatgtgttttcagtcaacttacctggtaagataagggtaaaaaataaaatgtctaTGGAATCCTGTGGACACGAAGCTAATGTGCAATGTTAAGACATAGTTAAAATTGTTCCTTTAATTCAAGCATGCtgtttgcagcatcagactgcaTGGGccaaatatactgtataatataccCATTTTATGTGTTAATTCTAAGTCCCTTTGGTTAAAACAATGATCTAAATGTCTGTACAGTGTATGTCTTTGACTGGGGTGAAACCAAATGGTGTCAACGTGGATGTGTTATCTCTGTGCCACAAGACATGTAATATTACTCTTATTTCATCTGATTTCACCGACAGCATGAGCCTTCGGATATATATATGATCTCTGAGGTCACAAGACAAGACTGATGACTGATGGTCACAAGACTGATGACTGATGGCATTTTACCATGGAATGTGATCTTATGGTCAAACAGACTGGAAGATTGAATGAGACTTTGAGGATTTTAAATCTGGGATCTGTGCGCTGGAAAAGTGTAAGGGTATGTGATTACATTTGACTGGGAGGCAAGGAGGTAGTTACATAAAGTATTATTGCTTTGGTTTTTGGATTGGTTCAACCGTTTTGGTACTGTGAAAGAAAAAATTAAATACAAGGAATGATGAAAATGAATACTTTTTTTCTGGAAATAGGCCTAATGTTTTCTGCTGTCTCACTTCCTTCAGAATGAGCAACGACCAAAAAGCACATTCATTTATCATAAATTGCAGGAAGTGTTTTGAGGTATTAATAACTTGACTGATGTGTCCCTGGCACTTTCACAGATGTCTGGAGGTCTAGAAATAAGATGCTGAGAAAACATTGTGAGCCACTGGAGATGACAGATTAAACACGCATATACTGGATACAAAAATAGGAGCTTTTTAAAATACAATCATGATAGTGATTAGAAAACGCCTGTCTAATACCGAACAGAACATCCATTTTTAGACACTTCTCTGGTCTCTGCAGTGGAGAGGCCTTTTCCCTGGGTTGGCCATAAGTAGGGGAACATTAGGGGGAACAGAGCGTTGTGTTTATAATGTGCCACTAGTGGTTGTTTTTGATCGATAGCAGAAACCCCATTCTGTCCCTCTACACAAAGACATATCTACTCTAAAGTCCATTTCCATGTTCTGTTCATTTGCTATGATTAGAAACCAtctgaagtagtgcactctaCTGACTGGAGTCACAAACACAAAATTACTAATGCCTTACCTCTCTGTTGCAAATGCTGTCCATACCACAATCCCCTCTATGGAGCGAATCTAGGTCATAGTCCAGCCAAACCCTCACCATGTCACCTCATGCCATCAGAACGACTGACCCAAAGGCAGCCATTTTAATCTCAGGTTGACTCGTGTGTTTTTGTTATCTGCATCAGAAAAGGATGGTGTTGCTTAAATGGCTAATCCTATTCTTTTCAGGGAGACTTGATGATGTCATGGCTCAGGCAACACTAAACTAACATTTACCCAAGAATGGGGGTAAGAATAACATTCAGCTAAGCAACACAGAACATCTGAATAATGGATTGTATGCAGTGAGAGTAATTTGTCCCTCTCTTTAGTATCATCGTCAAGAATCTTTTCCATTAACTTTGGAGCAGTGTGTTTATCTACTTGATACGTACAGTGCCtagcaaaagtattcacccccttggtgtttttcctcttttgttgcattacaacctgtgaTTTAaactgatttttatttggatttcatgta

Function

NR:

description
NUAK family SNF1-like kinase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566940.2 True 4971 mRNA 0.48 7 64348245 64391338

Neighbor

gene id symbol gene type direction distance location
LOC110492535 samhd1 coding downstream 5970 64316220 ~ 64342275 (-)
LOC110492532 tp53inp2 coding downstream 111746 64220384 ~ 64244660 (-)
LOC110492530 ggt7 coding downstream 128925 64205792 ~ 64219320 (-)
LOC110492529 LOC106566555 coding downstream 147405 64180193 ~ 64200840 (-)
LOC110492527 top1 coding downstream 168347 64149331 ~ 64179898 (-)
LOC110492537 LOC106566565 coding upstream 290 64391628 ~ 64397409 (-)
si:ch211-117c9.5 LOC106566567 coding upstream 55460 64445355 ~ 64485638 (-)
LOC110492541 LOC106566539 coding upstream 100045 64491383 ~ 64514012 (-)
parapinopsina LOC100135831 coding upstream 254063 64645401 ~ 64650567 (-)
LOC110492546 NA coding upstream 262452 64653790 ~ 64666518 (-)
G1400556 NA non-coding downstream 78695 64269218 ~ 64269550 (-)
G1400520 NA non-coding downstream 87677 64260281 ~ 64260568 (-)
G1400542 NA non-coding downstream 138043 64208995 ~ 64210202 (-)
G1400528 NA non-coding downstream 200129 64147815 ~ 64148116 (-)
G1400639 NA non-coding upstream 12363 64403701 ~ 64403998 (-)
G1400652 NA non-coding upstream 38372 64429710 ~ 64430791 (-)
G1400655 NA non-coding upstream 58064 64449402 ~ 64450195 (-)
G1400670 NA non-coding upstream 77723 64469061 ~ 64469500 (-)
G1400676 NA non-coding upstream 90518 64481856 ~ 64482510 (-)
G1400578 NA other downstream 37789 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 62252 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 63698 64284207 ~ 64284547 (-)
G1400552 NA other downstream 90812 64256926 ~ 64257433 (-)
G1400503 zhx3 other downstream 243206 64103370 ~ 64105039 (-)
G1401617 NA other upstream 1244144 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 1329169 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 2034213 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 2093563 66484901 ~ 66494667 (-)

Expression


Co-expression Network