si:ch211-117c9.5 (LOC106566567)


Basic Information

Item Value
gene id si:ch211-117c9.5
gene name LOC106566567
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64445355 ~ 64485638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947549.1
AGCTGGAACGGCTCACATCACATTCTTCATCTCATCAGAGCCCGGTGAAGGACCTACCCAGCATACAACAtcacttagctagctaggttaTTGGACCTCTGACTAAACGATACGAATAGCGACCTAAACCTCTCgatttactagctagctagctagctatcatttTCATTTACTGTCATCCATGAGATTCTTCAGGCTATCATTCAAGTGCTTCGTCGACTGCTTTTGAATTCCCTCTCCCCAACGTCTGACGCGACGCTTtgtaaatattacatttattgTTGAAGGGCACCAACTCGTTATGATAAattaaaaaatattcatatttttttgaTAACAAGAAGGCGAAAAAGAAACCAAGGAAAGAACTGGAGAACTGCatagcttctctctctgtctctctccccctctgaggCGCACTGAGTATCTTGATAGCGTCActcactagctactagctagctgcaCTTGGCTCTACCCACCTAACGTTACCCGGTTTATTTAAACCTAATCAATCAACATGTCGCCAGAAGTGGAAGAGAACTCCCCAGgtgaTGTGCGGCTCTCCCAGATGGAAGCAGGGATTCCAtctgaggaggagggtggtgtggCTCGCCCCCTAGTCCCTGTGCCTggggttggggtgggggcaggggggtgtgagggagggggaggacagaCCCAAACACAGCCTCAGGTCCAGGCTACAGCAGTACcgtatgtggagagagagacctggaccaGACAGATGGACTTCATCATGTCCTGTGTGGGCTTCGCTGTGGGGCTGGGCAACGTGTGGCGCTTCCCTTACCTCTGCTACAAGAACGGTGgagGCGTGTTCCTGATCCCCTACATGATTATTGTGTTCATCGGAGGTATTCCCGTGTTCTTCCTGGAAATCGCTCTTGGTCAGTTCATGAAGCAAGGAGGGGTCTCTGCATGGAACATTGCCCCTCTCTTTAAAGgtcTTGGCCTGGCCTCCATGGTAATAGTGTTCTTCTGTAACACCTACTACATCATGATCCTGGTGTGGGGCCTGTACTTCCTGCTTCACTCCTTCACCAACCCGTTACCCTGGGCTACCTGCGGGCACCCCTGGAACACCCTCAACTGCACCGAAAACTTCCGCCGGGCTTGCCACAACCGCAGcaccctgcctctcctctcctccacccccgaTCCGTCTATCCCCAGCTCCCTCCTCTCGTCGGTGGTATCCTCCCCGCTCAACCTCTCAtcctctactctgctcctctTCAACGGCAGCTGCGTGGAACCAGAGGGCATGCGCTCGCCAGTCATTGAGTTCTGGGAgcGTAAGGTGCTCCGTCTCTCTGGTGGTCTGGATGAGCCTGGTGACATCAGCTCTCACATGGTCCTCTGTCTGATCGCCACCTGGGTTATTGTTTACTTCTGCATCTGGAAGGGAGTCAAAGGCACAGGCAAGGTAGTGTACTTCACAGCTCTGTTTCCTTACCTGGTCCTGGTGGTTCTGTTGGCCCATGGTGTAACCTTACCTGGAGCGCTGGATGGGATTGTGTACTATCTGAAACCAGACTGGTCCAAACTCTGGGAAGCCCAGGTGTGGATTGATGCTGGCACTCAGATCTTCTTCTCCTATGCCATTGGTCTGGGTGCTTTAACTGCCCTTGGCAGCTACAACCGCTTCCACAACAACTGCTACCAagatGCGTTTGTTCTAGCCATGATCAACAGTGGGACCAGTTTCTTTGCAGGGTTTGTGGTGTTCTCCGTGCTGGGCTTCATGGCTGCAGAGCAGGGGGTCGACATCAGCAAGGTGGCCGAGAGTGgtccAGGCCTGGCCTTCATAGCCTATCCCAAGGCTGTTACTCTGATGCCTATGGCTCCAGTCTGGGCAGCGCTCTTCTTCTTCATGCTGTTGGTACTGGGCCTGGATAGCCAGttTGTTGGGGTGGAGGGCTTTGTCACGGGGGTCATGGACATGCTACCGCCCAAATCTATGGCGGGCTCGCTGCGTCGTGAGGTTGTCGTGGCGATATGCTGCATCACCTGCTTTTTCATCGACCTCTCCATGGTAACAGAGggagGGATGTATGTGTTCCAGCTGTTTGACTACTATTCTGCCAGTGGGATCACACTGCTCTGGCAGGCCTTCTGGGAGTGTGTGGTGGTGGCCTGGGTCTatggtgCAGATCGTTTCATGGATGATGTGGCTCGTATGATTGGCTACCGGCCGATGCCCTACATGAAGTGGTGCTGGTCCTACATCACGCCCCTTGTTTGTGTGggagtgTTCCTGTTCCACGTGGTGAACTACAAGCCCCTGACCTATAACTCAGTGTATACCTACCCCTTGTGGGGGGAGGCACTGGGCTGGTGTCTGGCCCTTTCCTCAATGCTCTGCATCCCCATCACTGTCCTCTACAAACTACTGCGCTGCAAAGGATCCttcacagagCGTTGGCAGCACCTGACCACTCCGGTGTGGGGTCGACATCACATGGAGTACTTGGCTCCTGAGTCTGAGGCCAAACTGCTGCCCCCTAATGGCCAGACCAAAAACACTTTGCTGTTTGAGAGTGTCATCTGACCATCTGAGCCCCACAGAATCCACCCCCTCGTTTCCCACTCAGAACCCTATgccccaaacacacactcacacaaacacacatagatacatacacacaccctgcCTTGGCCCAGCCATAAATGCACAGGAAGGCCACTCTGAAGCcgatcaaacacacacaccgaacAGCCCTGGACCAATGGACCAAAGAAAAGATGGGACAAGAGCTCAAATACACAATCAATACAGGCTGACattctctctgttttcctctacctctctctctctcaagggcTCTGAGGCTCTGTGCCTCAGTGCTGTCCTTTCCTGCCTCGTCCTGTGATTGTGTTGTGATGTCGAATGCAGCTGCGATATTTGCCCCCCCCCATCCCACCTCCACTgtgcctctccctttctcctctcttgtctgtgtgtgtccctctcctccctgtgtaATGGATTCTGTGGGGCGGTTCAGTGCTGCTGACCCAGTCTGTAGTAACCCAACATACCCTGTTGATGGTGCTGAATGAGTATTACTGATCCCAAGCTGGCAAACACTTATCtgaccgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactaaagGAGAGAGGTACTGTGCTCTATGTTATCTGTGTCCGTCTTTGACTCTGAGCTCAACCTGTCACCCGACCACTATTTTCTATCCTCCCTCATCAGTCAAACTGTTAAGAAACTATTTTCTATCCTCCCTCATCAGTCAAACTGTTAAGAAACTTCCCTCTGTAAATTAGAAAAACAGCTAAGCA
>TU1599433
gtgtgtgtggtgtgtgtggtgtgtgtgtgtgtgtgtgtgactaaagGAGAGAGGTACTGTGCTCTATGTTATCTGTGTCCGTCTTTGACTCTGAGCTCAACCTGTCACCCGACCACTATTTTCTATCCTCCCTCATCAGTCAAACTGTTAAGAAACTATTTTCTATCCTCCCTCATCAGTCAAACTGTTAAGAAACTTCCCTCTGTAAATTAGAAAAACAGCTAAGCATCACCACTTCCAGTGTAACTAACTAACTTACTAACTTAAGTGTCTTGAGTATTGTGTGAGTCTGTGAATCAGTGTTAATATTGGGGAGGGGATTGTAATCAGCATTTCCaccttgtgagagagagaagcctactgatttagaaagagagagatggagagagagagaagcctactgatttagagagagagagagggagggagagagaagcctactgatttagagagagggagagggagggagagagaagcctactgatttagagagagggagagggagggagagagaagcctaCTGAtttagggagagggagggggagagaagcctactgatttagagagagatggagggagagagaagcctactgatttagagagagagggagggagagagaagcctactgatttagagagagagggagggagagagaagcctactgatttagagagagggagggggagagaagcctactgatttagagagagagggagggagagagaagcctactgatttagagagagggagggggagagaagcctactgatttagagagagagggagggagagagaagcctaccaatggagaaagagagcgagggagagggagggagtgagaagcCTACTgatttagagagagggagggagggagagagaagcctactgatttagagagagagggagggagagagaagcctactgatttagaaagagagagggagggagagagaagcctactgatttagaaagagagagggagggagagagaagcctaccaatggagaaagagagcgagggagagggagggagggagagagaagcctaccaatggagagggagagagaagcctaccaatggagaaagagagcgagggagagggagagagagagaagtctaccaatggagaaagagagcgagggagagggagggagggagagagaagcctaccaatggagagggagagagaagcctaccaatggagagggagagagaagcctaccaatggagagggagagagaagcctaccaatggagaaagagagcgagggagagggagggagagagaagcctaccaatggagaaagagggagagggagggggagagaagcctaccaatggagaaagagggagagggagggggagagaagcctaccaatggagagcgagggagagagaagcctACCATTGAAGAgcgagggatagggagggagagagaagcctaccgatggagagagagagagggagggagagagaagtctaccaatggagaaagagagagggagagcaatgTGTCTTAATGCCAAGCCAAGAGAGAAGCAATAAAAGACAAGATggaaacttta

Function

NR:

description
sodium- and chloride-dependent creatine transporter 1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947549.1 False 3436 mRNA 0.52 14 64446798 64485638
TU1599433 True 1565 TUCP 0.50 3 64445355 64448472

Neighbor

gene id symbol gene type direction distance location
LOC110492537 LOC106566565 coding downstream 49389 64391628 ~ 64397409 (-)
LOC110492536 LOC106566564 coding downstream 55460 64348245 ~ 64391338 (-)
LOC110492535 samhd1 coding downstream 104523 64316220 ~ 64342275 (-)
LOC110492532 tp53inp2 coding downstream 210299 64220384 ~ 64244660 (-)
LOC110492530 ggt7 coding downstream 227478 64205792 ~ 64219320 (-)
LOC110492541 LOC106566539 coding upstream 5745 64491383 ~ 64514012 (-)
parapinopsina LOC100135831 coding upstream 159763 64645401 ~ 64650567 (-)
LOC110492546 NA coding upstream 168152 64653790 ~ 64666518 (-)
LOC110492543 LOC106566530 coding upstream 181086 64666724 ~ 64673620 (-)
LOC110492544 NA coding upstream 196980 64682618 ~ 64688581 (-)
G1400652 NA non-coding downstream 16007 64429710 ~ 64430791 (-)
G1400639 NA non-coding downstream 42800 64403701 ~ 64403998 (-)
G1400556 NA non-coding downstream 177248 64269218 ~ 64269550 (-)
G1400520 NA non-coding downstream 186230 64260281 ~ 64260568 (-)
G1400619 NA non-coding upstream 1231 64486869 ~ 64488384 (-)
G1400699 NA non-coding upstream 54114 64539752 ~ 64540851 (-)
G1400714 NA non-coding upstream 79207 64564845 ~ 64567234 (-)
G1400715 NA non-coding upstream 80867 64566505 ~ 64571927 (-)
G1400730 NA non-coding upstream 113315 64598953 ~ 64599608 (-)
G1400578 NA other downstream 136342 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 160805 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 162251 64284207 ~ 64284547 (-)
G1400552 NA other downstream 189365 64256926 ~ 64257433 (-)
G1400503 zhx3 other downstream 341759 64103370 ~ 64105039 (-)
G1401617 NA other upstream 1149844 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 1234869 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 1939913 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 1999263 66484901 ~ 66494667 (-)
G1403498 NA other upstream 2957783 67443421 ~ 67444179 (-)
G1400655 NA non-coding upstream 930 64449402 ~ 64450195 (-)
G1400670 NA non-coding upstream 20589 64469061 ~ 64469500 (-)
G1400676 NA non-coding upstream 33384 64481856 ~ 64482510 (-)

Expression


Co-expression Network