LOC110492541 (LOC106566539)


Basic Information

Item Value
gene id LOC110492541
gene name LOC106566539
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64491383 ~ 64514012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566944.2
AATGTCAGAATCATTTGTGACCTAGACTCTTTTAAATACCATTGAAAGCTGGTATTGCATCTCAACAGTGACTAatggcacacagagagagagagagatgtacacatgtttttccatgccaataaaacccctttGAATTTaagtgaattgaattgagagagcaaTTAGGCAGCCCATATGAGAAGATAAGCAGATGGAGACTGCACAGAGGGATTATGCTCCGATAACAGCCATAGATAAAACTGTATTTGCAGCATTACTCCAAACAAAAATAAGTAAACCCAGACCACCCCAATGCCAAGAGTAGCCTACAGTCAGTCCCACGTTGCATTTCAGTATCGCCATTCCCTTTATTCTAGTGCCATCGTCTGGTAACAGAGGCTCACTGCTTCGGAATATGGAATGTTTTGTTCTGGTCGTCCGCTAGAGGGCGATAGTGTTTTGATAGGTTCCGAAAACAGAGCTTGCAGTCTACTCTTCTCCCTGCTCTCGTTTATGTAGTTGATGTTGTCAGGGGTACAGTCAACAGTAAACCCATCTACATGAAATATGGATTATCCCATTGCAAATTCAGTCCTTTCGGATATTTAACACGGTCATAGATAGTGTTGCCTTTTATTGTATCCAAAGGAAAACAACCTGTCGTCGTGTCTGAAGAAGGCAGGCTCACTCGCTTAGCTAACCTACTGTACTTGAATGCTAGCTAAGCTAACGTTATATGGGTGAAATGAATGTTAGTAGCTAGCTACATAGTTAGCCATCTTTGCATGTATGATGCTGTTGTCAGCTATCGTTAGCTAACGCTAGCACACAGTGGCAGAACAGCCAGCATATGTACATCTCCACGAATATCCTGCCAGACATTTAGCTAGTCATGGATTATAGCAATCGACATATCCATTCAGGAATGGATGATGAATCTCAGGAAAGCATGGATGCGTGTGGCGACTCATCACCGTATGTGCCCCCACACCTCCCTCCAATGCCCGGCCGAGAGCGGCTTCAGATTCAGAAGAGCAGTGTCTGCTCCCGGGCTTACTTCGTGGTGGTCATGGTCTTCTTCCACGTTTACATCATAAACATCATTGGGCTGTTGTTCTACGTACACTACAATAACAGTCCGGCGGATATTGTCAGCGCCGACGGGGACACGTCGGCCTCTAGCAGCGGGGTTGACAGCCGCCTGTCCCCGTCAGACCCACCTCAGCAAGACCCTGACCTGGATGTCCGTCAGAGCTTCAGTCTACCACGCATCGAGGGGATACGGGTGGGTCATGTCCAGAGGGTGTCACTCAAGCCTGACAGAATCCAGGAAATGAAGACTCTCAGCCTCAAGCCTCTGCTCTTTGAGATTCCTGGCTTCCTGTCTGAGGAggagtgtggtgtggtggtgcagCTGGCCCAGCTGAAGGGTCTGATGGAGAGCCAGGCCACAGTGCCACCAGAAGACCAGGAGGAGGAACTGCAGCCACTGCTCTCCCTCAGCCCTGAGGAGACCTTCAGCCTGCTAGACCTGGACCAAGACGGACTACTGCAGAgacaggaaATCTTGAGCCACTCTCGTTCACGGGACGGGACCTGGCTAAGCCCAGAGAACTTACGACAGATACTCACCGGCCAGGAGGCCAGCCCAGCAGGTGTGTTAACTCTAGAGGAGTTCAGGCATGTGTGTGACGGCATGTCCCAGCATCCCTTGCAGCAGCGAGGCGGAACAAGGCGGGGCCAACCGAAAAGGAAGAGCCGACACACCTGGCTGTATCAGGGACCAGGATCACACCACATACTACACGCACTGAGGAACAGGGTGACCCATCTAGCGCGTCTGCCCTCCCCATTGGTTGAGCTGAGCGAGCCGCTGCAGGTGATTCGCTACGAGCAGGGAGGCTTCAGCCACGCCCACCACGACAGTAGCCCCTCCCATCCAGAGACCACCTGCTCACACACACGCCTGGCCGGAAACACTTCGGCACACACTGAGATCTCCTGCAGgTACATCACTGTGTTACTCTACCTGAACTCTGTGGAGGGAGGCGGAGAGACCACTTTCCCTGTGGCAGACAATCGCACCTATGAGGAGGAGGCATTAGTGCAGGGTGGTGTGGAtctgacagacacacagcagagctgTAACAGAGGAAACCTCAGGGTGAAACCAACAGCTGGGACTGCTCTCCTCTGGTACAACCATCTCTCTGATGGCAAAGGTTGGATGGGTGAGGTGGATGAATACTCCCTCCATGGGGACTGCCCTGTGACCCGAGGGGTGAAGTGGGTAGCCAACAGCTGGGTGAACGTGGACCCGGACCACCAGCGCCAAGCCCGCTACCAGAGACTGGTGACCCACAGACAGGAGGGCGAGCCGGGCAGAGAGGAGCGGGAACCCCCCCTCCCTCACAGCAACCACCACCAAGACCTGTAGTACTGTAGCTAGGGCTACTGGGAACACACTGTGGGGAGATGCACATGTTCCTTTAAGCACACGGGCAAATCACAATTTCCGCTTAGTCATGTTGTGAAAATTTGACTTAAATGGCAGTTAGGATTTGCCCCTCCGAATATCTGGAAAGACAAAGTACCTGTGTAATTAATTGAATTCAAAACCCAGTTCTAATTACACATGCAGACATTTTAGTTGCATTTGTCTGTTTTTCAGTCAGTTATGGTTCTGAGGGATCCATCTTGTTTTAAATGTAGTATTCACAGCAAATTGAGCCAAATTAGAATAGAATCAGATGACCCATCTATCTATGTCTTCCTGACAGGCAGATTTGATGTGGGATTGTATCTGTATAGTTCTGTCTGTTTCTTTCATGAGTGATGTGATGTTCTGAAACTATTTGTCAACAGAGTTGGGATGATGGGGGTGCTAGTGGGCTCGAGGAAGCCCCATAACCAGCCAGGCCCCTGGACCTCAAGCATTAGATATTTACGTTGGCCAAGCCCAATGTCTTTAGGGAACCAAGAGTCCATGTGTAACCAGTGTGTATGTGCTGCTAACAGCACTGTCCCTTTCCTCTTCCTGGGCGTGAACCAGTGGTCCACTGGTTCCAAACACGCCTGCTTGACGTACTAACCAGTTGCGCCACAGAAAAGGATTGAATTTAATGGCCCTATTTCAACCTGTGGATGATTTTATCCAGTACAATTTGAATCCCGTTTCTATGTTACAGTTCCTGTCTGGTGGTTGTGTTCGGATGATGAAGAACCACTCTCATTCTCAAACGAGCTGTCCTTTCATACAACTCCTTGTTAAAGATGGAACCCGCATTAGGGGAAACAGCGCCACTGTCCGTCCCCAGCACCTTTTGTTATTGTTTTAGTTTGGACAAAACGGAGGTGAGGTGCGTTGAGCGGTGTGGTTAAAGAAACTAAAACCTGCAGCACATATCCTGCTGTTATATCCACCTGCAATGATgtttgagagggagaaaaaaCGGTGAGATTTACAGTAACTTCTTTCTTGTTGTAATAATAGTTATTTTTCAAAGTCTTCTTGATTCGGGATTCAgataaatgtgtttatttatttgtttatttatctatttatttgttgtatttgattatttattatctatgttattattatttattaactTAATAAGGTGATTGATGAATGTATCATTATTACTTGACTGGTTGATGTTGCATTGAGTCTATTACAGTTGTTGTTCACTGTATACATACAATAAGTCATGGAAAACAATACAATGTGAATGTTTTTTTCTGTA

Function

NR:

description
transmembrane prolyl 4-hydroxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566944.2 True 3728 mRNA 0.48 9 64491383 64514012

Neighbor

gene id symbol gene type direction distance location
si:ch211-117c9.5 LOC106566567 coding downstream 5745 64445355 ~ 64485638 (-)
LOC110492537 LOC106566565 coding downstream 93974 64391628 ~ 64397409 (-)
LOC110492536 LOC106566564 coding downstream 100045 64348245 ~ 64391338 (-)
LOC110492535 samhd1 coding downstream 149108 64316220 ~ 64342275 (-)
LOC110492532 tp53inp2 coding downstream 254884 64220384 ~ 64244660 (-)
parapinopsina LOC100135831 coding upstream 131389 64645401 ~ 64650567 (-)
LOC110492546 NA coding upstream 139778 64653790 ~ 64666518 (-)
LOC110492543 LOC106566530 coding upstream 152712 64666724 ~ 64673620 (-)
LOC110492544 NA coding upstream 168606 64682618 ~ 64688581 (-)
LOC110492545 lrtm1 coding upstream 470250 64984262 ~ 64991471 (-)
G1400619 NA non-coding downstream 2999 64486869 ~ 64488384 (-)
G1400676 NA non-coding downstream 8873 64481856 ~ 64482510 (-)
G1400670 NA non-coding downstream 21883 64469061 ~ 64469500 (-)
G1400655 NA non-coding downstream 41188 64449402 ~ 64450195 (-)
G1400652 NA non-coding downstream 60592 64429710 ~ 64430791 (-)
G1400699 NA non-coding upstream 25740 64539752 ~ 64540851 (-)
G1400714 NA non-coding upstream 50833 64564845 ~ 64567234 (-)
G1400715 NA non-coding upstream 52493 64566505 ~ 64571927 (-)
G1400730 NA non-coding upstream 84941 64598953 ~ 64599608 (-)
G1400721 NA non-coding upstream 129293 64643305 ~ 64691411 (-)
G1400578 NA other downstream 180927 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 205390 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 206836 64284207 ~ 64284547 (-)
G1400552 NA other downstream 233950 64256926 ~ 64257433 (-)
G1401617 NA other upstream 1121470 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 1206495 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 1911539 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 1970889 66484901 ~ 66494667 (-)
G1403498 NA other upstream 2929409 67443421 ~ 67444179 (-)

Expression


Co-expression Network