LOC110492542 (LOC106566540)


Basic Information

Item Value
gene id LOC110492542
gene name LOC106566540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64506307 ~ 64510776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566946.2
CTACTCTCCTATTCAAATGCAGAGACAAGCCTACAGAGGTGACGTGTCACCGCCTGCCTAGTATAAATACACCAATCCCCTCCCTGTCATACAGACCATCCCCACAAACACCCAGacactctctcctgtgtggatttcCTTTCCTCCTCCAGGGATGATGCCCGTTCCTGCACCTCATCCTTGCACCACCTCTAAGAGGACCTCTCCTCGTGCTCCTGCTCTCCTCGtgctcctgctcctcctgctTCCAGCTGGGCCTGGCTGGAGTGTCAGGCTGGAGGCAGGACCTGGAGCTGGGAGTGGACCAGAGGCTGGTACAgttaccaggaccagggttaGAGCTGGCTCTAGAGTTAGGGCTGGGTTGGAGACTGCGGATGAGGCCGTGGCTGAAGATAGAGCTGGTGCTACCATCCTGTCCGTCAGCAGTGAAGGGCAGTGGGAGCCCCGGAGCTCCTCCCGCTGTGTGCCCATCCCGGCGGGCATGGCCCTCTGCCAGAACATCGGCTACGCCACCATGAGGATGCCCAACCTGCTGGGGCACGAGTCGCCAGGCGAGGCCGTCCAGCAGAGTGCCAGCTGGCTGCCCCTGCTCGCCCGGGAGTGCCACCCCGATGCCCGCATCTTCCTCTGCTCGCTGTTCACACCCATCTGTCTGGACAGGTTCGTCTCTCCGTGTCAGAGTCTGTGTGAGTCAGTGCGGGACAGCTGCGCGCCTATTATGGGTTGCTATGGTTACCCCTGGCCAGATATCCTTCGTTGTGACCAGTTTCCTGCCAACCACCTCATGTGTATCTCCTCTGTCACCAACACCAGCACAGGAGGGCGTAGAGTGCCCCAGGCTAGCTGTCGAGACTGTGAACTGGAGGAGGCCTCGTCTGCCAAGGACGTGCTGGAAACTTTCTGTAGGAGTGACTTTGTGGTGAAATTGCGTCTCACGCAGCTAAAATCCAGTCAGGTGAGTTTGGCCCAGTTCTCCCTGGCCTCTCGTCTGCAGGTTCTGAAGCACGGGCCTCTCCTGGGAGGACAGATCCGCTCCCGCCTGCAGCTGTGGCTGGAGAGAGACGCCAGCTGTGTACGGAACATGACGCGGCGTCAGCCCCAAGGCGGGACCTTCCTGGTGACGGGCACGGTGCAGGGGGAATGGCTGGTGGTCAACAAGGCCTTTGCCTGGAACAAACACGCCAGGAACCTGATGACTGCAGCCCGCAAGTGGAAACAGCACCGATGTAGAGGCTAGCAGGGGCTCTGGCTAGGAGATAAACTTCAGGTCTGTAATGGATCTGAGCAGAGCTATAGGCCTAGGTGTACAGAGTCAGGGATGTGATTAAAACACCATATGacatcagcagagagagaggaggttgttTGGGGGAGGGTACATTTCTATGATAGACTTCCTGGATTTGAATCACATCCTTGGATAGCTGGATGTTTCAGAGAGCACCATCCTGAGCTCAGGAGAGGACGCCGCAAAGGACAATACCTTCTGTGTTTCCTGCAAATGTACATATCTATAAATTATAAGTAAATATCACTGATCTATATTTGTAAGAGGTTGACTGGAATTAAATTAGTGTTTTCAAAGTGTATTCATTCATGATGTTA

Function

NR:

description
secreted frizzled-related protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566946.2 True 1608 mRNA 0.56 4 64506307 64510776

Neighbor

gene id symbol gene type direction distance location
LOC110492539 LOC106566566 coding upstream 73643 64407997 ~ 64432664 (+)
trnag-gcc-17 NA coding upstream 139502 64366735 ~ 64366805 (+)
trnag-gcc-16 NA coding upstream 144912 64361325 ~ 64361395 (+)
trnag-gcc-15 NA coding upstream 145683 64360554 ~ 64360624 (+)
trnag-gcc-14 NA coding upstream 146145 64360092 ~ 64360162 (+)
LOC110519666 LOC108235233 coding downstream 6375 64517151 ~ 64622468 (+)
LOC100136613 LOC106566534 coding downstream 119667 64630443 ~ 64645181 (+)
LOC110492553 LOC106566530 coding downstream 159992 64670768 ~ 64673832 (+)
cacna2d3a LOC102307471 coding downstream 211766 64722542 ~ 65037527 (+)
capza1b capza1 coding downstream 1137580 65648356 ~ 65653937 (+)
G1400202 LOC106566541 non-coding upstream 29886 64473548 ~ 64476421 (+)
G1400190 NA non-coding upstream 53642 64451499 ~ 64452665 (+)
G1400184 NA non-coding upstream 62736 64436147 ~ 64443571 (+)
G1400178 NA non-coding upstream 104887 64401056 ~ 64401420 (+)
G1400129 NA non-coding upstream 193428 64312585 ~ 64312879 (+)
G1400213 LOC106566539 non-coding downstream 1979 64512755 ~ 64513502 (+)
G1400234 NA non-coding downstream 39443 64550219 ~ 64551448 (+)
G1400246 NA non-coding downstream 54757 64565533 ~ 64571054 (+)
G1400249 NA non-coding downstream 59153 64569929 ~ 64574777 (+)
G1400256 NA non-coding downstream 83080 64593856 ~ 64594524 (+)
G1400095 NA other upstream 258605 64247297 ~ 64247702 (+)
G1400047 NA other upstream 279866 64159170 ~ 64244664 (+)
G1400056 top1 other upstream 326852 64166374 ~ 64179455 (+)
G1399694 NA other upstream 820163 63685566 ~ 63686144 (+)
G1401041 NA other downstream 679214 65189990 ~ 65190275 (+)
G1401074 NA other downstream 747739 65258515 ~ 65258844 (+)
G1401354 NA other downstream 1385115 65895891 ~ 65897063 (+)
G1401782 NA other downstream 1508225 66019001 ~ 66024245 (+)
G1402066 NA other downstream 2032535 66543311 ~ 66543685 (+)

Expression


Co-expression Network