LOC100136613 (LOC106566534)


Basic Information

Item Value
gene id LOC100136613
gene name LOC106566534
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64630443 ~ 64645181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566951.2
TTTCCACAGAAAGGCTCCACTTCTGTTACTTTTGTAATAAAGTCTAATTGAATTTACAAGCTCCGGTGTCAAAGAAGAATGTGATTTAATATTTTCCACAACAGAAGTAGCTTTTTAGACAAATCCTCCATTCCAAGGAAAACCGCCATAGATAAAGAAATATTTGACTTTATGGCGTTGCCATGTCAGACCCTTTGCCTTCATCACCTGCCCTGTGCTGTCTCCAGACTCTTGCAGGTCCAGATGAAGACAATGatgaagaagacgaagaagacgaTGCTTCCTCTCCAGCTGATTGTGATCATTTGTCTGTCTTATGGACAGGCAGATGATTCCACCAACAAGCAATCCATCTCTGATTACAGCCGTGACCCTTTCATTACCCTTTTCTCTGGCCTGTCTGCCGAGGTGGGGAACCTGAGGAGGGAGGTTGAGGACTTGAGAAAGTCATGCAACTCTGTAGATGTGGCCTTCTCAGCTGCCCTGCGACCTAGTATCCAGGACAATGAGGGCTACGGCAACACCGGGCCCTTCCAGGCAGACACCAACCTGGTCCACAGTCACATCATCACCAACGTTGGCAACGCGTTCAGCCCCCGGACAGGAGCATTCACAGCACCAGTACATGGAGTCTACTACTTCACTTTCACCTCCTATGCCTGGAAAAAGGAGGCCAGCATCGGTGTGGCCCTTTACAAGAACCAAGAGCAGGTAGCTCTGGTCTATGAGTTTCAGGACAAGGGGGACAATGAAGACTTTGCGTCCAACGGGGCCACCCTGCAGCTGGCCAAAGGAGACATCGTTTACCTGGTCCTACCGTCTAGTTTCCAGGTGACCAGTAATGCTTTCAAAAACCTTAGCACCTTCAGTGGCTTCCTTCTCTTCCAGGTTGAAGGAGAAAACGTCTGAGAGACTGAGGGGGTCAGGGTGTAGGTTGGGAGGGTTCTCCACTTAACTTCCACACATTATAATCTCTTTTGCTGTCATTTACATGTGTGTGAGGCAATAAAAGCAATGTTAAAAACA

Function

NR:

description
trout C-polysaccharide binding protein 1, isoform 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566951.2 True 1026 mRNA 0.48 5 64630443 64645181

Neighbor

gene id symbol gene type direction distance location
LOC110519666 LOC108235233 coding upstream 7975 64517151 ~ 64622468 (+)
LOC110492542 LOC106566540 coding upstream 119667 64506307 ~ 64510776 (+)
LOC110492539 LOC106566566 coding upstream 197779 64407997 ~ 64432664 (+)
trnag-gcc-17 NA coding upstream 263638 64366735 ~ 64366805 (+)
trnag-gcc-16 NA coding upstream 269048 64361325 ~ 64361395 (+)
LOC110492553 LOC106566530 coding downstream 25587 64670768 ~ 64673832 (+)
cacna2d3a LOC102307471 coding downstream 77361 64722542 ~ 65037527 (+)
capza1b capza1 coding downstream 1003175 65648356 ~ 65653937 (+)
LOC110492564 LOC102303593 coding downstream 1350846 65996027 ~ 66267216 (+)
srpk3 srpk3 coding downstream 1778708 66423889 ~ 66434911 (+)
G1400267 NA non-coding upstream 12645 64617338 ~ 64617798 (+)
G1400220 NA non-coding upstream 20681 64609403 ~ 64609762 (+)
G1400256 NA non-coding upstream 35919 64593856 ~ 64594524 (+)
G1400249 NA non-coding upstream 55666 64569929 ~ 64574777 (+)
G1400246 NA non-coding upstream 59389 64565533 ~ 64571054 (+)
G1400269 NA non-coding downstream 8626 64653807 ~ 64735625 (+)
G1400308 NA non-coding downstream 55856 64701037 ~ 64705227 (+)
G1400334 NA non-coding downstream 114737 64759918 ~ 64764466 (+)
G1400371 NA non-coding downstream 209165 64854346 ~ 64855623 (+)
G1400202 LOC106566541 other upstream 156155 64473548 ~ 64476421 (+)
G1400095 NA other upstream 382741 64247297 ~ 64247702 (+)
G1400047 NA other upstream 404002 64159170 ~ 64244664 (+)
G1400056 top1 other upstream 450988 64166374 ~ 64179455 (+)
G1399694 NA other upstream 944299 63685566 ~ 63686144 (+)
G1401041 NA other downstream 544809 65189990 ~ 65190275 (+)
G1401074 NA other downstream 613334 65258515 ~ 65258844 (+)
G1401354 NA other downstream 1250710 65895891 ~ 65897063 (+)
G1401782 NA other downstream 1373820 66019001 ~ 66024245 (+)
G1402066 NA other downstream 1898130 66543311 ~ 66543685 (+)

Expression


Co-expression Network