LOC110492546


Basic Information

Item Value
gene id LOC110492546
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64653790 ~ 64666518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947558.1
GAGTTTCAGCTGCTGAAGTTGACTGCTTTGCATTTCCATACAGTTGCTGTCTATGGTGCTGAATTGACCAGAGACATAGATAGTCAGAATTCAGCTAACAGTCAAGTCAGATGAGGAGAAACCTTAGatcagtttatttggtaaatttCATGAACCTGGCCTTTTGAAGCAATAAAATCCAGTTATATTTAACCAAACACTGACATCTAGCGGAAGTGTCCTGCACAGACTCAAACTGATATAAAGACAACTCAGCAGAGAGCTCCACCCTACTCCTGCTTAACAGGAAGGAGAAAAGCTCACAACAGAACAGCGCTGTAACATTCAGCTATTTAGAATTCTTTGTAAACAACCAAGAATCAAAACAACAATTGAAGACTAAGGAACACCGTCAGGAAAACAGAGATTTCTAAGTTCAGATGAGTTTTCAAAAGTGAACCTTAGTCAAAAGAGTTCAGAAGTCAGAAGTGAAAGTAAACCTTCATAACAGAGATAAGCAGTGAGAAATGGCCTCTAAAGCTTCTCTCTCCGAGGTTGATTTCTCCTGTCCAGTATGCTGTGACATCTTCAAGGATCCTGTGGTCCTGTTGTGTAGCCACAGCTTCTGTAAAGCCTGTCTGGAGGAATACTGGAAACAGAAGACATCTTGGGAATGTCCAGTCTGCAGAAAGAAATCATCAATGGAATTCCCCCCCTGTAACCTGGTTTTAAAGAACCTGTGTGAGGCCTACTTACACGATAGAAGTCAGAGAGCTTCAGCAGGGCCTGAGGTGCTCTGCAGTCTGCACAGTGAGAAACTCAAgctgttctgtctggaggataaaCAGCCCATCTGTTTTGTGTGCCAAACTTCCAAAAAGCATAAAAGCCATGACTGCTGCCCAATAGATGAAGCTGTACTGGATCATAAGGAGGAACTCAAGACTGCACTGGAGCCCTTACAGGAGAAGATGAAGGTCTTCAGAGAAGTTAAACTGAGCTGTGATCAAACAGCCAACCACATCATGAACCAGGCCCAGCACACAGAGAGGCTGATTAAGATGGAGTTTAAGAAGTTTCATCAGTTTCTATATCATGAAGAGAGAGCCAGGATAGCTGAactgaaggaggaagaggagcagaagagtcagatgatgaagaagaagattGAGAAGATGAGCAGAGAGATATCATCACTTTCAGACACAATCAGAACCATAGAAGAAGAGCTGGGAGCTGAGGACATCTCATTCCTGCAGAACTACAAGGATACAGTGAAAAGAGCCCAGTGTACACTGCCAGATCCAGAGAGGGTTTCAGGAGCGCTGATCGATGTGGCAAAGCACCTGGGAAACCTGCAGTTCAGAGTCTGGGAGAAGATGCAGGGAGTAGTTCACTACActccagtTACTCTGGAACTCAACACTGCCCACCCAGATCTCATCCTGTCTGATGATCTGACCAGTGTGAGATACAGTGATGAGAAACAGCAGCTTCCTGACAACCCAGAGAGGTTTGATAGCCATAGAATGGTCCTGGGCTCTAAGGGTTTTAACTCAGGAACACACAGCTGGGACATTGATGTTAGGAAGAATAAAGGCTGGGACCTGGGTGTGATCACAGAGTCTGTCCAGAGGAAGGGATACAATGGTTATTGGCATAGATCCTGGGGTGTGTTGTTTGGTGGTGGTGATTATAACACACATGCACCAAATAAGCCACTCGCTCCCCTCATAGTGAGACAGAATCCCCAGAGGATCAGAGTGCAGCTAGACTGGGAAGGAGGAAAGCTGTCATTCTCTGACCCTGTCAataacacacatctacacacattcacacacactttcactgAGAGAGTCTTTCCATATATCAGGAATCTCTGTTTTCTCCACCCTCTGAGAGTGCTACCAGGGAAGGTGTCTGGATCAGTggatactgtctctgtctgaatcAGGGACTAACAGGATGTAAATGAGTCAGTAACACCCCTTGATGTCCTTCATTAAGATTCTCACAGAGGGAGGACACACTGTGATGGAGATTATCATTGTCTGACTCACCTGTTACTAATATAGAATGAATATGTAATCTGTTCTTTGTTGGTTTTATTTTTTACCACATTCACATTTTGTCTGGTTGTTTTAACCCCTGCAGTATGTATCCCAATAAACTTGGGCTGCTTGAATGGCATTTGGCGTATAGTGTTGTGGCCTTGGACCATGCCTCTGTTAGCTAGCTTGTAGACAATGACACCGTTAATGTATGTCTGTAGAGTGCAACACATTTTCAACCAATAAACATGTTTGAATTACCTGGA

Function

NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947558.1 True 2296 mRNA 0.44 6 64653790 64666518

Neighbor

gene id symbol gene type direction distance location
parapinopsina LOC100135831 coding downstream 3223 64645401 ~ 64650567 (-)
LOC110492541 LOC106566539 coding downstream 139778 64491383 ~ 64514012 (-)
si:ch211-117c9.5 LOC106566567 coding downstream 168152 64445355 ~ 64485638 (-)
LOC110492537 LOC106566565 coding downstream 256381 64391628 ~ 64397409 (-)
LOC110492536 LOC106566564 coding downstream 262452 64348245 ~ 64391338 (-)
LOC110492543 LOC106566530 coding upstream 206 64666724 ~ 64673620 (-)
LOC110492544 NA coding upstream 16100 64682618 ~ 64688581 (-)
LOC110492545 lrtm1 coding upstream 317744 64984262 ~ 64991471 (-)
wnt5a LOC106566524 coding upstream 428271 65094789 ~ 65129767 (-)
LOC110518541 LOC106566519 coding upstream 465132 65131650 ~ 65620292 (-)
G1400730 NA non-coding downstream 54182 64598953 ~ 64599608 (-)
G1400715 NA non-coding downstream 81863 64566505 ~ 64571927 (-)
G1400714 NA non-coding downstream 86556 64564845 ~ 64567234 (-)
G1400699 NA non-coding downstream 112939 64539752 ~ 64540851 (-)
G1400619 NA non-coding downstream 165406 64486869 ~ 64488384 (-)
G1400851 NA non-coding upstream 187665 64854183 ~ 64854726 (-)
G1400867 NA non-coding upstream 219010 64885528 ~ 64886033 (-)
G1400877 NA non-coding upstream 240378 64906896 ~ 64907557 (-)
G1400904 NA non-coding upstream 288080 64954598 ~ 64955910 (-)
G1400907 NA non-coding upstream 300108 64966626 ~ 64972606 (-)
G1400578 NA other downstream 343334 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 367797 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 369243 64284207 ~ 64284547 (-)
G1400552 NA other downstream 396357 64256926 ~ 64257433 (-)
G1401617 NA other upstream 968964 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 1053989 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 1759033 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 1818383 66484901 ~ 66494667 (-)
G1403498 NA other upstream 2776903 67443421 ~ 67444179 (-)

Expression


Co-expression Network