LOC110492553 (LOC106566530)


Basic Information

Item Value
gene id LOC110492553
gene name LOC106566530
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64670768 ~ 64673832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036581.1
cttctgacttcaactgtatgtgcacaTTACTTATTGGAAGATCCTCTGAAAACGTACAAAGTTTTTTTTATGTAGGTTGTGCTGCCATCCTGCTAGAAGGTAACAGATTATTTTATGATTTCAATGGATTTAAATGGATACAACGGTTTAAATGGATTTTCATTGTGTTCCATTGTGTTTTTCGCCCCCTAGTGGAGCTTTCTGGTACTTAGACTGTAAGGAAAACAGGAAGAGACATGCAGAAGGAAACAGGAGGAGACGCCGAGAAGCAGCTAAAAAACGCAACGGTGCAGGTCTTTCAGTGCAGATCTCTCGTCACGCTTCAGCCTCGtaaaatatttgtttACTCTGAACTGCAGGTTTCCCAGGTGCTTTGCCACATCGATCAGCGCTCCTGAAACCCTCTCTGGATCTGGCAGTGTACACTGGGCTCTGGAAGAACATTCAGGAGTCAGTGTTGCTGTGGGGTTTGATACAGAaccacagagaagagagagacataataGTCCCATTACCTTTTCACTGTATCCTTGTAGTTCTGTAGGGAAACAAAATAACATGTTAATAGATGTATTGATCTTAGAAAATCAATTACTACAATATTTATTTCATAATTGATACGGCAGTTGATTTATCAGAGGTAGATTAGTCCTTACCTGCAGGAATGAGATGTCCTCAGCTCCCAGCTCTTCTTCTATGGTTCTGATTGTGTCTGAAAGTGATGATATCTCTCTGCTCATCTTCTCaatcttcttcttcatcatctgactcttctgctcctcttcctccttcagtTCAGCTATCCTGGCTCTCTCTTCCTCATGTAGAAACTGATGAAGCTTCTCAAACCCCATCTTAATCAGCCTCTCTGTGTGCTGGGCCTGGCtctggagacagtagagaggaatgtcaaaaatgtaaataattgaTTATCCATAATTCCACAGGGTTATGATGAATCTTCACAGTATCATTGTATTTGAGCTTCACTCTGTATTCTTACTTTGATGTGGTTGGCTGTTTTATGACAGATCAGTTTAACTTCTCCAAAGACCTTAAATTTCTCCTGTAAGGGCTCCAGTGAAGTCTTGAGTTCTTCCTGATATGAACCAACATTATTAAGATAAAGGAGTGGATTGGCACACAGATCTTTATTTACGTGACTATATGTACATGCTGTAGGTCAAGTAGCGTTAAATACATCTCCTACCTTATGATCCAGTACAGCTTCATCTATTGGGCAGCAGTCATGGCTTTTATGCTTTTTTGAAGTTTGACACACAAAACAGATGGGCTGtttatcctccagacagaagagCTTGAGTTTCTCACTGTGTTGACTGCAGAGCACCTCAGACCCTGCTGAAGCTCTCTGACTTCTATCGTACTGGACATTCCCGAGATGCCTTCTGTTTCCAGTATTCCTCCAGACAGGCTTTACAGAAGCTGTGGCTACACAACAGGACCACAGGATCCTTGAAGATGTCACAGCATACTGGACAGGAGAAATCATCCTCGGAGAGAGAAGCTTTAGAGGCCATGGCTCACTGCTTATCTCTCTGTTATGGCTTTTGAATTGAAGGTTTAGTTTCACTTTTGACAACTCTTTTGATGAATGTTTACTCTTGAAAAGTTAACTGAACTCAGAAATCTGTTTTACCTGCCGTTATTCCTTAGTCTTGAATCGTTGTTTTGattgtttacaaatattattGGTCATCCTATATGTCATATCAGTTTAGCTGAATGCTGAATAGCTGAATGTTACAGCGCTGTTCTGTTGTGA
>XR_005036582.1
tctgacttcaactgtatgtgcacaTTACTTATTGGAAGATCCTCTGAAAACGTACAAAGTTTTTTTTATGTAGGTTGTGCTGCCATCCTGCTAGAAGGTAACAGATTATTTTATGATTTCAATGGATTTAAATGGATACAACGGTTTAAATGGATTTTCATTGTGTTCCATTGTGTTTTTCGCCCCCTAGTGGAGCTTTCTGGTACTTAGACTGTAAGGAAAACAGGAAGAGACATGCAGAAGGAAACAGGAGGAGACGCCGAGAAGCAGCTAAAAAACGCAACGGTGCAGGTCTTTCAGTGCAGATCTCTCGTCACGCTTCAGCCTCGtaaaatatttgtttACTCTGAACTGCAGGTTTCCCAGGTGCTTTGCCACATCGATCAGCGCTCCTGAAACCCTCTCTGGATCTGGCAGTGTACACTGGGCTCTGGAAGAACATTCAGGAtTCAGCTATCCTGGCTCTCTCTTCCTCATGTAGAAACTGATGAAGCTTCTCAAACCCCATCTTAATCAGCCTCTCTGTGTGCTGGGCCTGGCtctggagacagtagagaggaatgtcaaaaatgtaaataattgaTTATCCATAATTCCACAGGGTTATGATGAATCTTCACAGTATCATTGTATTTGAGCTTCACTCTGTATTCTTACTTTGATGTGGTTGGCTGTTTTATGACAGATCAGTTTAACTTCTCCAAAGACCTTAAATTTCTCCTGTAAGGGCTCCAGTGAAGTCTTGAGTTCTTCCTGATATGAACCAACATTATTAAGATAAAGGAGTGGATTGGCACACAGATCTTTATTTACGTGACTATATGTACATGCTGTAGGTCAAGTAGCGTTAAATACATCTCCTACCTTATGATCCAGTACAGCTTCATCTATTGGGCAGCAGTCATGGCTTTTATGCTTTTTTGAAGTTTGACACACAAAACAGATGGGCTGtttatcctccagacagaagagCTTGAGTTTCTCACTGTGTTGACTGCAGAGCACCTCAGACCCTGCTGAAGCTCTCTGACTTCTATCGTACTGGACATTCCCGAGATGCCTTCTGTTTCCAGTATTCCTCCAGACAGGCTTTACAGAAGCTGTGGCTACACAACAGGACCACAGGATCCTTGAAGATGTCACAGCATACTGGACAGGAGAAATCATCCTCGGAGAGAGAAGCTTTAGAGGCCATGGCTCACTGCTTATCTCTCTGTTATGGCTTTTGAATTGAAGGTTTAGTTTCACTTTTGACAACTCTTTTGATGAATGTTTACTCTTGAAAAGTTAACTGAACTCAGAAATCTGTTTTACCTGCCGTTATTCCTTAGTCTTGAATCGTTGTTTTGattgtttacaaatattattGGTCATCCTATATGTCATATCAGTTTAGCTGAATGCTGAATAGCTGAATGTTACAGCGCTGTTCTGTTGTGA
>TU1599023
GGAGGAGACGCCGAGAAGCAGCTAAAAAACGCAACGGTGCAGGTCTTTCAGTGCAGATCTCTCGTCACGCTTCAGCCTCGtaaaatatttgtttACTCTGAACTGCAGGTTTCCCAGGTGCTTTGCCACATCGATCAGCGCTCCTGAAACCCTCTCTGGATCTGGCAGTGTACACTGGGCTCTGGAAGAACATTCAGGAGTCAGTGTTGCTGTGGGGTTTGATACAGAaccacagagaagagagagacataataGTCCCATTACCTTTTCACTGTATCCTTGTAGTTCTGTAGGGAAACAAAATAACATGTTAATAGATGTATTGATCTTAGAAAATCAATTACTACAATATTTATTTCATAATTGATACGGCAGTTGATTTATCAGAGGTAGATTAGTCCTTACCTGCAGGAATGAGATGTCCTCAGCTCCCAGCTCTTCTTCTATGGTTCTGATTGTGTCTGAAAGTGATGATATCTCTCTGCTCATCTTCTCaatcttcttcttcatcatctgactcttctgctcctcttcctccttcagtTCAGCTATCCTGGCTCTCTCTTCCTCATGTAGAAACTGATGAAGCTTCTCAAACCCCATCTTAATCAGCCTCTCTGTGTGCTGGGCCTGGCtctggagacagtagagaggaatgtcaaaaatgtaaataattgaTTATCCATAATTCCACAGGGTTATGATGAATCTTCACAGTATCATTGTATTTGAGCTTCACTCTGTATTCTTACTTTGATGTGGTTGGCTGTTTTATGACAGATCAGTTTAACTTCTCCAAAGACCTTAAATTTCTCCTGTAAGGGCTCCAGTGAAGTCTTGAGTTCTTCC

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036581.1 False 1786 mRNA 0.41 3 64670768 64673832
XR_005036582.1 False 1440 mRNA 0.41 4 64670770 64673832
TU1599023 True 849 lncRNA 0.42 2 64671019 64673072

Neighbor

gene id symbol gene type direction distance location
LOC100136613 LOC106566534 coding upstream 25587 64630443 ~ 64645181 (+)
LOC110519666 LOC108235233 coding upstream 48300 64517151 ~ 64622468 (+)
LOC110492542 LOC106566540 coding upstream 159992 64506307 ~ 64510776 (+)
LOC110492539 LOC106566566 coding upstream 238104 64407997 ~ 64432664 (+)
trnag-gcc-17 NA coding upstream 303963 64366735 ~ 64366805 (+)
cacna2d3a LOC102307471 coding downstream 48710 64722542 ~ 65037527 (+)
capza1b capza1 coding downstream 974524 65648356 ~ 65653937 (+)
LOC110492564 LOC102303593 coding downstream 1322195 65996027 ~ 66267216 (+)
srpk3 srpk3 coding downstream 1750057 66423889 ~ 66434911 (+)
comta LOC106566505 coding downstream 1803445 66477277 ~ 66494685 (+)
G1400267 NA non-coding upstream 52970 64617338 ~ 64617798 (+)
G1400220 NA non-coding upstream 61006 64609403 ~ 64609762 (+)
G1400256 NA non-coding upstream 76244 64593856 ~ 64594524 (+)
G1400249 NA non-coding upstream 95991 64569929 ~ 64574777 (+)
G1400246 NA non-coding upstream 99714 64565533 ~ 64571054 (+)
G1400308 NA non-coding downstream 27205 64701037 ~ 64705227 (+)
G1400334 NA non-coding downstream 86086 64759918 ~ 64764466 (+)
G1400371 NA non-coding downstream 180514 64854346 ~ 64855623 (+)
G1400406 NA non-coding downstream 226780 64900612 ~ 64901548 (+)
G1400427 NA non-coding downstream 260691 64934523 ~ 64935761 (+)
G1400202 LOC106566541 other upstream 196480 64473548 ~ 64476421 (+)
G1400095 NA other upstream 423066 64247297 ~ 64247702 (+)
G1400047 NA other upstream 444327 64159170 ~ 64244664 (+)
G1400056 top1 other upstream 491313 64166374 ~ 64179455 (+)
G1399694 NA other upstream 984624 63685566 ~ 63686144 (+)
G1401041 NA other downstream 516158 65189990 ~ 65190275 (+)
G1401074 NA other downstream 584683 65258515 ~ 65258844 (+)
G1401354 NA other downstream 1222059 65895891 ~ 65897063 (+)
G1401782 NA other downstream 1345169 66019001 ~ 66024245 (+)
G1402066 NA other downstream 1869479 66543311 ~ 66543685 (+)

Expression


Co-expression Network