cacna2d3a (LOC102307471)


Basic Information

Item Value
gene id cacna2d3a
gene name LOC102307471
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64722542 ~ 65037527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947559.1
ttttatacacctgtcagcaacgggtgtggctgaaatagcggaatccactcatttgaaggggtgtccacatgcttttgtatatatagtatatgttGTCATTCGGGAACCACAGCAATAACAACATTCCCCTCAGTATCCTCGAAGAAACAGCATCCTCCTCAGTATCCTCGAAGAGAAGAGCCTCTGCACATCGTTCAATAGGCGTGCTCCTCCCGCATAATTTTATGGTCCCCTTCAGTCTCTTCCCTCTCCGTAATCTTTTATTGTTTCTCTCTACTCCCCACTCCACTCTCTGGCTGCGGAAGGGCAGCTCGCGGTTGCAGTAGGTCACCGAGGCGGTTTAACAGACTTTGCTTACAGCGGGAGTCGACTCGAGCTCAATCGCGCAGCAGAGCCGTTACTGCCTGTTCAGTCGGCAGGAGAGAAATCGCTGCGCTCAGGACATCACACAGCAGCAAACCCAGAAAAGACCGACTCCGACAAAAACACTGTCGCGCCGTGTCCGCGTTGTCACATCGGAGAGAATGGACACACTGAATTAAAACATTTAccatgatttattaaaacattgaTTGGACCAGTAATTTGGGTTATTTAAAGATTTTTGCTACTTGGCTCTCCGGGAGACGCAGCGCACAGAAACGCACACGGAGACGTAGCTAAAAGCCCCAACTCCTAGTGGACACTGAGGGAGGAGTGTGAAGATGCCGGGGGATCTGAACTCGATGTGTTCtcgtgtgtggagtgtgtgtctgCTCCTAGTGTGGATATGTCTTGGCACGAGGGTTGTCGGTGTGGTCGGGTCGCACCAAGGCAGCATCCCTCTCTCCGTGGTGAAGTTGTGGGCCTCAGCGTTCGGAGGAGAGATCAAGTCCATCTCAGCCAAGTATTCTGGTTCCCAGCTACTGCAGAAGAAGTATAAGGAGTTTGAGCGAGCGGTGCGTGTAGAAGAGATAGATGGATTGAGGTTGGTGAAGAAGCTGGCTGAGAACATGGAGGAGATGTTCCACAAGAAGTCTGAAGCCATGAAGCGTCTGGTGGAGGCAGCAGAGGAGGCACACCTGCAACATGAAGATGACCCAGACCTACAGtaTGAGTATTTCAACGCAGTATTGATTAATGAGGTGGATGAAGAAGGTAACAGTATGGAGCTGGGAGGAGACTTCCTTCTGCAACCAAACGACCACTTCAACAACCTGTCTGTCAACCTCAGCCTCAGTGTGGTGCAGGTGCCCACCAACATGTACAACAAAGactcaGCTATAGTAAATGGAGTTTACTGGTCTGAAGCCTTGAATAAAGTGTTTGTGGATAACTTTGAGAGGGACCCATCCCTCATATGGCAGTACTTTGGCAGTGCCAAGGGCTTCTTCAGGCAGTACCCagGGATCAAATGGAGACCAGATGAACATGGTGTCATTGCTTTCGACTGTCGCAACCGCAAATGGTACATCCAGGCAGCCACATCTCCTAAGGATGTAGTGATCTTGGTGGATGTGAGTGGCAGTATGAAGGGCCTGAGGCTGACCATTGCCAGACAGACCGTCTCTTCCATACTGGACACACTGGGGGACGACGACTTCTTCAATGTCATTGCTTACAACGACGAGGTACACTATGTAGAGCCATGCCTGAATGGAACTCTGGTCCAAGCTGACGTCACCAACAAAGACCATTTCCGGATGAATCTGGATAAGTTGCTAGCTAAAGGCATCGGCATGCTGGACGTAGGTCTCACTGAAGCCTTTGAGGTCCTCAATGATTTTAACCAGACAGGTCGAGGCAGTGTGTGTAGTCAGGCCATCATGTTGGTGACCGATGGGGCAGTTGATACTTATGACTCTGTGTTTGCCAAGTACAACTGGCCCGACAGAAAGGTCCGGATATTCCCCTACCTGATTGGTCGAGAGTCAGCCTTCGCAGATAACCTGAAATGGATGGCCTGCGCCAATAAAGGTTACTTCACTCAGATTTCCACTCTGGCTGATGTACAGGAGAATGTGATGGAGTATTTGCACGTGCTCAGTCGGCCCAAAGTCATTGCCCAAGAGCACGATACGGTGTGGACCGAGGCCTACATTGACAGCACCGTGAGTGGACACCGCTCCCCCATCTCTCACATGCTGGAGGATGGTCAGGGTCCTATTTTGATGACCACTGTGGCCATGCCTGTGTTCAGCACCAAGAATGAGacgAGGAATAGAGGCATCCTGCTAGGTGTGGTTGGTACTGATgttcctgtctctgagctcctcAAAACCATCCCAAAATATAAGCTGGGCATCCATGGTTACGCGTTCGCCATAACTAACAACGGGTACATTCTGACCCACCCTGACCTCAGACCATTGtatGAGGAGAGTAAGAAACGTAGGAAGCCCAACTACAGCAGTGTGGATCTGTCTGAGGTGGAATGGGAAGACAAGGACGACACACTGCGTAATGCCATGGTAAACAGAAAGACTGGCACCTTCTCCATGGAGGTAAAGAAGACTGTGGACAaagggaagcGTGTGCTGGTACTGCATAATGATTACTACTACACTGACATCAAGGGAACCCCCTTCAGTCTAGGGGTAGCCCTGTCCAGAGGCCATGGAAAATACCTCTTTAGAGGAAACGTCACTGTAGAAGAAGGTCTTCATGATCTGGAGCACCCTGATGTACAGCTAGCAGATGAATGGACATACTGTGACACAGATGAGCACCCAGAGCATCGGTACCTGTCTCAGATAGAAGCCATCAAACTCTACCTCAGTGGACGAGAAGCACACCTTAAATGTGATAAGGAATTGATCCAGGAAGTTCTGTTTGATGCTGTAGTAACAGCTCCTCTAGAGGCCTACTGGACCAGCCTGGTACTAAACAAGTCagaGAACTCTGATAAGGGCGTGGAGATAGCCTACCTGGGCACACGTACTGGCCTCTCCAGAATCAACTTGTTTGTGGTTCCGGACCAGCTGACCAATCAAGATTTCCTGACAGCTGAAGATAAAGAAGGGGTGTTCAACGCCGATCACTTTCCCCTGTGGTACAAGAGAGCAGCAGAACAGGTTCCTGGAACCTTTGTCTACTCTCTCCCCTTCAACACAGGGAAGGACAATAATAGTGTAGTGTTGGCCAGCACTGCCATTCAGCTACTGGACGAAAGAAAATCACCCATTGCTGCCGCTGTGGGGATCCAGATGAAGCTGGAGTTTTTCCAAAGGAAGTTCTGGACAGCCAGCcgacagTGTGCAGCGTTGGATGGGAGATGTTCTATAAGCTGTGATAATGAGaACATCAACTGTTACCTGATAGACAACAATGGCTTCATCCTGGTTGCAGAGGACTACTCTCTGacagggATGTTCTTTGGAGAAGCAGAGGGGGCAGTGATGAATAAACTGCTCCTCATGGGTTCCTTTAAGAGGGTTACTCTGTATGACTACCAAGCGATCTGTAGGATCTTTGCAGAAAGTAGTGACGGTTCCCGTGCACTATTGGACccCTACTTTGCCATCTTTGCCACAGTGAAGTGGCTCCTTACAGAACTTGTCattTTTATGCTGGAGTTTAATCTGTACAGCTGGTGGTACTCTGACCTCACAGCCAAAGcccagaGGGGTGATCGGACCATGTTGGTGCCATGTGATACAGAGTACCCAGCCTTTGTCTCAGAGAGAACCATAAAGGAGACCACTGGGAACATCGACTGTGAGGGATGCATCAAATCATTTGTGATCCAGCAGATCCCCAGCAGTAATCTCTTCATGGTGGTGGTAGACAACAAGTGTGACTGTTCTGATGCTGCTCCAATCACCATGGACCCCATCGAGATCATGTATAACGAGTCTCTGAAGTGTGAACGACTGAAGTTCCAGAAGGACCGGAGACGACCTGACTCCTGCCACCCTTTCCACCCAGAGGAGAACTCTATGGAGTGTGGAGGAGCTCTCAACCTCTCCCCATCACTAATGGCAACACTGCTCTGCCTGCTGCTGGTGCTGTTTCCTAGGTGACCAGGGCTGGCCACGCCCCCCAATCCCAGGCTTGGCTGGGATTGGCTCGGCTCGGCATGCACATGAATCCCTGACTACGCCacagatcatttaaaaaaatcacaaaCCAACCCCTAGCCCTTCCCCTAGCCCTCCCCTAGCCCTCCCCCTAGCCCTTCCCCTAGCCCTCCCCTGGCTCTAGG
>TU1599096
TCTGTTTAACGTTGATCTGTCATATGTTGTCTGGGATACAAGCAAGTAGGGTGCTTGTGTGAGGTGCTCCTTATATTGTGGCACGCTGCTTTGAATGTGGACCAGTAGTGTGCTCTACTGTGAAGTCTCCCATGCGTTCCTTGACTGCGGCTGCACATAACGAGTCTCTGAAGTGTGAACGACTGAAGTTCCAGAAGGACCGGAGACGACCTGACTCCTGCCACCCTTTCCACCCAGAGGAGAACTCTATGGAGTGTGGAGGAGCTCTCAACCTCTCCCCATCACTAATGGCAACACTGCTCTGCCTGCTGCTGGTGCTGTTTCCTAGGTGACCAGGGCTGGCCACGCCCCCCAATCCCAGGCTTGGCTGGGATTGGCTCGGCTCGGCATGCACATGAATCCCTGACTACGCCacagatcatttaaaaaaatcacaaaCCAACCCCTAGCCCTTCCCCTAGCCCTCCCCTAGCCCTCCCCCTAGCCCTTCCCCTAGCCCTCCCCTGGCTCTAGGCTTCTCCTACCCTTTCCCCTAGCCCTTCCCCTAGCCTTTCCCCTAGCTCTTATCCTAGCCCTAGCCTTTCCCCTAGCCTTTCCCCTAGCCTTTCCCCTAGCCTTTCCCCTAGCCCTTCCCCTAGCCCTCCCCCTAGCTCTCCCCCTAGCCCTTCCCCAAATACCACCCCTAGCCCTTCCCCAAAGCCCTCCCCCTAGCCCTCTCCTAGCCCTTCCCCAAAGCCCTCCCCCTAGCCCTTCCCAAAAGCCCTCCCCCTAGCCCTTCCCAAAAGCCCTCCCCCTAGCCCTTCCCAAAAGCCCTTCCCCTAGCCCTTCCCCTAGTCTTTCCCCTCGCCCTCGCCCTCCCCCTAGCCCTCCCCCTAGCTTTTCCCCTAGTCTTTCCCCTCGCCCTTCCCCTAGCTCTTCCCCTAGTCTTTCCCCTAGTTCTTCCCCTAGCTCTTCCCCTAGTCTTTCCCCTCGCCCTTCCCCTAGCCCTCCCCCTAGCTCTTCCCCTAGTCTTTCCCCTCGCCCTTCCCCTAGCCCTCCCCCTAGCCCTCCCCCTAGTATTTCCCCTAGCTCTTCCCCTAGCCCTTCCCCTAGCTCTTCCCCTGGTCTTTTCCCTAGCCCTCCCCTAGCCCTTCCCCTAGTCTTTCCCCTCGCCCTTCCCCTAGCCCTTCCCCTAGCTCTTCCCCTAGCCCTTCCCCTAGCTCTTCCCCTAGTCTTTCCCCTCACCCTTCCCCTAGCTCTTCCCCTAGCTCTTCCCCTAGCCCTCCCCCTAGCTCTTCCCCTAGTCTTTCCCCTAGCTCTTCCCCTAGCTCTTCCCCTAGTCTTTCCCCTAGCTCTTCCCCTAGCCCTTCCCCTAGCTCTTCCCCTAGCCCTTCCCCTAGCTCTTCCCCTAGCTCTTCCCCTAGCCCTTCCCCTAGCTCTTCCCCTAGCTCTTCCCCTAGCCCTCCCCCTAGCTCTTCCCCTAGTCTTTCACCTAGCTCTTCCCCTAGCTCTTCCCCTAGTCTTTCCCCTAGCTCTTCCCCTAGCCCTCCCCCTAGCTCTTCCCCTAGTCTTCCCCTAGCTCTTCCCCTAGCCCTTCCCCTATCTCTTCTCCTAGACTTTCCCCTAGCCCTTCCCTAGCCCTTCCCCTAGCCCTTCCCCTAGTCTTTCCCCTAGCCCTCCCCTAGCCCTTCCCCTAGCTCTTCCCCTAGCCCTTCCCGTAGCTCTTCTCCTAGCCCTTCCCCTAGCTCTTCCCCTAGCCCTTCCCCTAGCCATCCCCCT

Function

NR:

description
Voltage-dependent calcium channel subunit alpha-2/delta-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947559.1 False 4183 mRNA 0.50 37 64722542 65036283
TU1599096 True 1758 lncRNA 0.59 2 65034286 65037527

Neighbor

gene id symbol gene type direction distance location
LOC110492553 LOC106566530 coding upstream 48710 64670768 ~ 64673832 (+)
LOC100136613 LOC106566534 coding upstream 77361 64630443 ~ 64645181 (+)
LOC110519666 LOC108235233 coding upstream 100074 64517151 ~ 64622468 (+)
LOC110492542 LOC106566540 coding upstream 211766 64506307 ~ 64510776 (+)
LOC110492539 LOC106566566 coding upstream 289878 64407997 ~ 64432664 (+)
capza1b capza1 coding downstream 612073 65648356 ~ 65653937 (+)
LOC110492564 LOC102303593 coding downstream 959744 65996027 ~ 66267216 (+)
srpk3 srpk3 coding downstream 1387606 66423889 ~ 66434911 (+)
comta LOC106566505 coding downstream 1440994 66477277 ~ 66494685 (+)
grm6a LOC106566502 coding downstream 1488453 66524736 ~ 66565764 (+)
G1400308 NA non-coding upstream 17315 64701037 ~ 64705227 (+)
G1400267 NA non-coding upstream 104744 64617338 ~ 64617798 (+)
G1400220 NA non-coding upstream 112780 64609403 ~ 64609762 (+)
G1400256 NA non-coding upstream 128018 64593856 ~ 64594524 (+)
G1400316 NA non-coding downstream 1520 65037803 ~ 65039968 (+)
G1400465 NA non-coding downstream 4008 65040291 ~ 65041070 (+)
G1400478 NA non-coding downstream 7943 65044226 ~ 65044429 (+)
G1400481 NA non-coding downstream 10010 65046293 ~ 65046501 (+)
G1400941 NA non-coding downstream 20460 65056743 ~ 65057037 (+)
G1400202 LOC106566541 other upstream 248254 64473548 ~ 64476421 (+)
G1400095 NA other upstream 474840 64247297 ~ 64247702 (+)
G1400047 NA other upstream 496101 64159170 ~ 64244664 (+)
G1400056 top1 other upstream 543087 64166374 ~ 64179455 (+)
G1399694 NA other upstream 1036398 63685566 ~ 63686144 (+)
G1401041 NA other downstream 153707 65189990 ~ 65190275 (+)
G1401074 NA other downstream 222232 65258515 ~ 65258844 (+)
G1401354 NA other downstream 859608 65895891 ~ 65897063 (+)
G1401782 NA other downstream 982718 66019001 ~ 66024245 (+)
G1402066 NA other downstream 1507028 66543311 ~ 66543685 (+)
G1400435 NA non-coding upstream 48686 64950452 ~ 64985600 (+)
G1400427 NA non-coding upstream 98525 64934523 ~ 64935761 (+)
G1400406 NA non-coding upstream 132738 64900612 ~ 64901548 (+)
G1400371 NA non-coding upstream 178663 64854346 ~ 64855623 (+)
G1400334 NA non-coding upstream 269820 64759918 ~ 64764466 (+)

Expression


Co-expression Network