wnt5a (LOC106566524)


Basic Information

Item Value
gene id wnt5a
gene name LOC106566524
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65094789 ~ 65129767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947560.1
ttttacaatttcacCTAGACGCAAGTTGCGAGTCTTTCCCACTTGGCCCGCTTTCTTTGCCGTAGAAAGTTTAGTGACTTTAAAGAAGGGCTTTGGGAGAAAATGTGGAGCGCATGCGCCATCTAGAAGTTTTCCCCCGCGCATCAGTGCTAGGGTTTGCTAGTTAGAGAGAGGAGGCGACGAGGCAGGTGACAGAAGGAGAAGGAGTTGCtcttcaacacacacactatcGGGCGGGGGTTATCTCCACGAGCGTACCTTCTCCAAGCGAGTTCTCCATCTCTCACACAGTACTGCTGTTTGGAGTTGTCTTCCAGTGACGAGCTTGGAGTGGACTTGCGGCAATTCGTGTCTTCCACCACTCAAAGTTGGATGTGTTGAACGCACTTTTTGCTGGTAAAGTTTTTGTTCCAGAGTAAATCAACGGAGGAGTTCAGGAGAGAGCGGCGTAGTTCTGTGCAGAATGGAGGATGAAATAATGGCCTCAGGTTTGTGGCGAGGAACCCTGCAGTGTGGATGTTACCACAGGTAGAACACGTTCTGAGTTCAAGGTGTCACGGCTGTAGGATCATCTCTTCTCACCTATCACCGGTTCATGTGTTTACCTGCGCTTTACACATTAGTGCCAGCCCGTCGGAACCTCTACAAAGCCTTCGGAACCCCTACAAATCTGCAAGGAAACTTGGAAGGATAAAGCTACCGCTATCAATCCTCCCAACCATCAAAAGAGTGTTGGCAACAGTTTATTACAGCTGACGTTTCTGGCCACGGGCACTTGCTAGTTAGTTTCTTGTGAATGTTTTATTTGTCATTAAGTGTTTCCGCGGATTCACGCCCACGTTTGTTAAAGGCTCTAATTATTCATAGTGCTGCTGGACATTGTAAATAACCCCCGTCGTCTCTGCAAGAGCTCTCCTCTCCGCTGTCCCGCGCTCACGGAGCGCATTCGTCGATAACGGATCGCCTATGCCAGTCTTCCGACACTGAGCCGCAGGACTACCACGGTTACTGCCACCCTCCTCCGTTACACACCGGACACTATCCCGTACAACCCCGATTTAGCACTAACTGCTTTGGATAGAAACCGAACTGAGCCAACGGTATAAGTAAAAGGAGTCTCTCGAGCCCACTACGGCCTTGGCACTGGGATTATTCCTTTAATAATCATCTCACCAAAGTGGATTATCGTTCGTAAAGAATTGTTTTCCGTGAGCTGATCCAGTAACTGATCCAGCATGTTGTTCCTGCGGAGGCTGGTGTGTGTATGCTGTCCCTCGGCACCGGCGGGGAGTGTGTTGGACTCCAGACCGTGTGTGTTCGCCCTCACACTGCTCACACTGCTCCtgcaggtggtggtggaggccaACTCATGGTGgtCTCTAGCCATGAACCCTCTGCTGATCCCTGAGGCCTACATCATCGGTGCCCAGCCTTTGTGCAGCCAGCTGGTGGGTCTATCCCAAGGCCAGAAGAAGCTGTGCCAGCTCTACCAGGACCACATGCAGTACATTGGCGAGGGCGCCAAGACGGGCATCAGGGAGTGTCAGTATCAGTTCAGACACCGCCGGTGGAACTGCAGCACCGTGGACAACTCCTCCGTGTTCGGACGGGTCATGCAGATAGGAAGCAGAGAAACAGCATTTACATATGCCATCAGCGCGGCGGGGGTGGTCAATGCTGTGAGCAGGGCTTGCAGAGAGGGGGAGCTGTCGAGCTGCGGCTGCAGTCGTGCTGCACGTCCCAAAGACCTGCCTCGTGATTGGCTGTGGGGCGGCTGCGGGGACAACCTGAACTATGGCTACAGATTCTCTAAAGAGTTTGTTGACGCGCGGGAGCGAGAGAAGAGCTATGCCAAGGGATCCTTTGAGAGTGCCCGGCTCATGATGAACCTACACAATAACGAGGCTGGACGGAGGacTGTGTCGGACCTGGCCCATGTCTCCTGTAAGTGCCATGGTGTGTCGGGCTCCTGCAGTCTGAAAACGTGCTGGCTGCAGCTGGCAGACTTCCGCAAGGTGGGCGAGACCCTGAAGGAGAAGTACGACAGCGCAGCCTCCATGAAGCTCAACTTGCGTGGCAAGCTGGTGCAGCGGGACAGCAAGTTCAACCCCCCCACCAGCCATGACCTGGTCTACATCGAGTCCAGCCCAGACTACTGTCTGTCCAACCAGAGCACAGGCTCCCTGGGTACTGTAGGCAGGCTGTGCAATAAGACCTCAGAGGGCATGGATGGCTGTGAGCTGATGTGCTGTGGCCGGGGCTATGACCAGTACAAGGCCCAGATTGTGGAGCGATGCCACTGCAAGTTCCACTGGTGCTGCTATGTCAAGTGCAAGCGTTGCACCAAAACCGTGGACCAGTTCGTCTgcaagtgaggaggaggaggaggaggaggaggatgggaagagtgtgtgttcgtgcaagtgtgcatgcgtgtgtgtatccAGAGAGGCGGAACGAAGGAGgcgaagagaggaagaaagaaaaataaaaaactatataaattatatttataGAGTTAAACAATTATACCGTTGCAGAAGACTGATACTTTCTTTTCCATGTAATAGTTCCAAAAAATGTTATGCCTTCTGAAACCGAAAATACagtcaaatatttattttctgagAATATTTTTGCCCGATCATCCAAAACTAATTTTTAATTAATCCCCAGGCCTGGAGATCAGCagtcattattttttttactttcaatATGACCTATAACAAGGTTCCCCAATAGGTGGTTCCCCAATAGGTGGTTCCCCAATAGGTGGTTCCCCACAGGTGATTTTATTTGCCCCCCTTTCTGAGCAAAACAAAAGACAAATGATAATTTTCATTGTTGAATTTAAGACTGTAAAATCACTGGGAAATCAGCGCAAAGTTatttttaatttaggaaatctatTCCCAAGTATCCCGACGCATAAATAGAGAGAAATGTGATTATATTCCAATGTAATCAGGGTTTGAAATTATTCTGTTTTTGCCAAGTACTGTATCTTTTTggattcttgcggtcaatttgcagtgtacacaTTATTTATAACTATGTCTGCCCCTCGTCCATCCGCTCAAGGAAAAATCATCCACGGCTGAATGTAATTGGGGACCACAGTCCTATAGCTTATATTTGACTAGTCCATTGGGTCACCATGACGATGAAACGGAAGCTTCTCTCACGTTTCATAACACTAGATGAGTTAAATGTTGTGGTTGATGGAGAACGCTGAATGCCCACAGTCTTAGATGTTGAATCTGGGGCTGCCGGTAAGAGGGGAATGTTTACTTCCATATTTATGTCACTATAGGGTGGTTAGACCTAAATCAAACCTCCATTGAACATGGTTAAATCTGTCTCTATAGGTAGTCATTGGCCCcatcctaaaccctaaccctagtccctTATGTTGCCTCTGTCTAAACCAAACAAGGGCCTAGGAAAGTGGGAGTGATTTGGGTTGGGGTTAGTTCCATCCTGTAATGTATCCCACAAGGCCTAGATCTTCCCAGGTGCCCCAGCTAGTCCTCCCAAACACATTCAGCATATGCACTTTGACCCCGAGACCTTACCCCGTCTGTATGATTTGTTTGTTTTGAGCTACAGTGTCTGTAATATACCATATTATAGTCTACTTTCTCCATATTAAAACCCATATCCACTTAACATATAACATGCTACTTTCATGgtttaaatatacagtatatgggcAATGTTGTGGTCATGATGGTGAAATCCCACATGTTCTATATGGTATATAGTAGGTCTAACCAACCAATCACTTATTAAattgtatgtatttattttattttatccaaATCTCTTAAGCTTCCAGATAGCGCTGTGGGTTTTTCCTATTtcaataaatccatttaaatcCTTCACTTTGTTACATACAATATTTTCAGGTTACTTATCATTTGTTTTCACGTTTTTAAGGATATGTCACAGATTTAATTTGGTTCCGTGACATTGTTTTTGTAAAGGGAATTGCCCTTTGTTCTAAAACACCTGCTCATTGTGTTACCCCCAAGACTTCACAGACGGTTCTAGCCTTTGCTTGTTGCCACAAACTTGTTAATATCCCTCAGCTCCTCCCCACTAGCCCTGTGATCATCTTCATTAGAACATTGTTCCTATATGTTATCAATCCAAACTGTATATTTATTCTCTTCGCAATTAATTGAGATTTGCAAAACATATTTCTTATagctgttattttgttttgtttctttttAAAATTGGATCGATGTGCTACTTTGTTTCAATAAATATTCTACGTAAACCTGCTGAACAGTCGTAACTTTCAATACAGATCTActccagtacagtatagttcaatTCAACTCCACATTTGAAACTAAATTTGTATTTAAAACATTTGAAACCTTGTCTATATTTCCCTCTACCCTGAGGCTTGGCGAGAAATCCACTGTTATTGTGTGTACAGAATTAATGTAGGGAAGATTTGTCTAtttgtatattattttattatgAACTATGAGTTGTCTACTTTTGACGTAGTAGGAGACATTTGATTCTAAAAGTTAATAATATGATCAAATCAAACATGTCATTAAATAAACACATCTGGAACCTTCA

Function

NR:

description
protein Wnt-5a-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00444 WNT5; wingless-type MMTV integration site family, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947560.1 True 4605 mRNA 0.45 5 65094789 65129767

Neighbor

gene id symbol gene type direction distance location
LOC110492545 lrtm1 coding downstream 103318 64984262 ~ 64991471 (-)
LOC110492544 NA coding downstream 406208 64682618 ~ 64688581 (-)
LOC110492543 LOC106566530 coding downstream 421169 64666724 ~ 64673620 (-)
LOC110492546 NA coding downstream 428271 64653790 ~ 64666518 (-)
parapinopsina LOC100135831 coding downstream 444222 64645401 ~ 64650567 (-)
LOC110518541 LOC106566519 coding upstream 1883 65131650 ~ 65620292 (-)
tlr9 tlr9 coding upstream 493408 65623175 ~ 65628493 (-)
apeh apeh coding upstream 503363 65633130 ~ 65644141 (-)
cttnbp2nlb cttnbp2nl coding upstream 530513 65660280 ~ 65704778 (-)
LOC110492562 LOC106568106 coding upstream 585944 65715711 ~ 65754610 (-)
G1400990 NA non-coding downstream 531 65093483 ~ 65094258 (-)
G1400978 NA non-coding downstream 12166 65082204 ~ 65082623 (-)
G1400962 NA non-coding downstream 21359 65073201 ~ 65073430 (-)
G1400953 NA non-coding downstream 31753 65062816 ~ 65063036 (-)
G1400946 NA non-coding downstream 35899 65058653 ~ 65058890 (-)
G1401393 NA non-coding upstream 15278 65145045 ~ 65145531 (-)
G1401396 NA non-coding upstream 21910 65151677 ~ 65151911 (-)
G1401400 NA non-coding upstream 26271 65156038 ~ 65156422 (-)
G1401401 NA non-coding upstream 26809 65156576 ~ 65156826 (-)
si:ch211-117c9.5 LOC106566567 other downstream 646317 64445355 ~ 64485638 (-)
G1400578 NA other downstream 784333 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 808796 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 810242 64284207 ~ 64284547 (-)
G1400552 NA other downstream 837356 64256926 ~ 64257433 (-)
G1401617 NA other upstream 505715 65635482 ~ 65636372 (-)
G1402686 srpk3 other upstream 1295784 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 1355134 66484901 ~ 66494667 (-)
G1403498 NA other upstream 2313654 67443421 ~ 67444179 (-)

Expression


Co-expression Network