tlr9 (tlr9)


Basic Information

Item Value
gene id tlr9
gene name tlr9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65623175 ~ 65628493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001129991.2
ACATCTGGTCTGTCATTCAAGGCTTTTCTCTCTCCATGCTTTATTTGAAGGAAAGGTTGGCAGAAACTTGTTTTGGAATAAAGCATCGGCCTATTCCATTCGAAACAACATCACGTTTCATTATAATTGACCTCCAGTGGGTTATTGAGGCCCAAAACCTCCCACGGTCATGCAGGGATATGGAGTTCTCCTCTGCTTATGTCTACTACCACCAGCTGTTAGGACGACCAATCCCAAGTTCTTCCCTTGCGACAGCAACGCAGACTCCAGTGTGGTGAACTGCTCTCGGAGGGCGCTCACCCGCATCCCAGTGATCTGCTCAGCCTCTGTCCTTTCACTTGACCTGAGTTATACCGGGATTCAGCAGGTAGGGAAGGACGCATTCTCTGGGGTTCCAAACCTCCAGAAACTGAGCATGACAAGGAACTGTCTCCCTAGTCATATGAGGGCCCTGGGGTCTCCCTCATGCCATGTTGAGATCCACAAGGATGCCTTCATGTGTCTTAAGAACCTCAGCACTCTCCTACTGGAAGGAAACAGCCTCACTTCTCCCCTCCCCAGACTACCTGACAGCCTGGAAGTCCTTAATCTGGAGTCTAACCACCTTTACAACATAACCCAGCCCCTCGGCACACCAAATCTCAAGCAGCTGCTACTCACCATGAACTGCTACTATGGTAACCCCTGCAACCAGTCCTTCCACATTGACGAGGCAGTCTTCAGGGAGCTTACCCAGCTGCAAACCCTTACCCTGGGTTTTAACAATGTAACATCCATCCCTCCGGGAATGCCTCCCTCTCTGAAGAGTCTGGATCTGAATGAGAATAAAATTTCTGTGTTGGATGAGTGGGCATTTGCCAATCTGACCCAGCTCTGTAAACTCAACCTGGGTTGGAACTGCCAGCGCTGTGACCATGCTGCTCAGCCCTGCTTCCCCTGCTTCAACAACACCCCACTTGACATCAACCCACATGCGTTTTACGCCCAGAACAACTCTCTCAAATTCCTCAGCCTGAGGGGAAACTCCCTCCGCAACATCCCAGAGGGCCTCTTCAGTCCCCTGGTACACCTAGAGAGATTGGACCTATCGGACAACCTACTGGCCATTGCCATACGCACCGGTACCTTCTTCATAGAGCTGAAGAGGCTCACTTGGATCAGCCTCATCTACAACTATGAGCCGATGACGACCTTCAAGGAGCTGGTGCTGTCTCCCAACGTGACCCAGATGTCTGGCCTGAAAACACTTCTCCTCAGTGGGAACTTCTTCCATATGGTCTCAGAGGAAAGTGTGGCGGTTCTGGCCAAGTTCCGTTGGCTGGAGGTTCTGGAGCTGCGGATGAACTTCATCAGGTCCTGTAATCTGAGTGCCCTGGCCCAGCTACCAGCCCTGGTGAGGGTCGACCTTTCCCAGAACATGCTGGaatttctcccatccttctctacTCAGTCCAACGTGTGTAAGTCCTTTAAGAGCTTTCAGAACCAGAACCGGTATGCCACAGTGGAACTTCAGAACCCACCCATGTTGCTCAGTGACAGGAAGGCTGTCCCAGATGAGCCCTGGCATCATCCAGGTCCAGTAGTCACTGCAGCCGAGCCAGGGCCAAACACGTTGGCGATACTGGAGGATGAGTGCACTCAAAACCCAACTATACTTTCCTTCAAAAATAATCTCTGCAATGGTGCCATGTCTTTTGACCTTTCCCAAAACAACATCCTCACCCTCAATAGCAGTTTGTTCCTAGGTATGGAGAAGGCAGTCTGTTTGGACCTCTCTTACAACTACATGAGCCAGAGCTTAAACGGCAAACAGTTTCTCCACCTGGACAACCTGGCGTACCTTAGCATGGCCCACAACAGGATAGATCTGTACTATGGAGATGCCTTCAAGGAGCTCAGTGCCACTCTGAAGACTTTGGACCTCAGCAACAATGAGTTTCACTTCCTAATGAGAGGCATGGGCCATCGCTTTGAGTTCATCAAGAACCTCCCCAATCTGGAGGCGTTAAGTCTGTCTGACAACAGCATTGGGATGCGGATAGATCATACACTGTACAGTGACTCCCTCAGGTACCTGTATTTCTCCGGGAACAACCTGGACATCATGTGGGACACTAGAAGCAACGACTACATCACCTTCTTCCAGAACCTGACCAATCTTATCTACCTAGATATCTCCAGGAACCAGCTGAGGTCTCTTTCACCAGCAGCCTTCTGTAACCTGCCTGTCAGCCTCAAGGTGCTCCGGGtcagcaacaacaaactgaacTATTTCCCCTGGGAGAACATCACAGCACTCGGCCAACTATGCCACCTTAACCTTAGTGTTAATTATCTGTCTGAACTTCCCGACAAAGTCATACCTTTTCAGGCAAACTTGACCCTTCTGGACCTTAGTCACAACCAGATCAGCTTTCTCCCCGAAGACTTTTTCAGCCAAGCATTGGCATTGCGTTTTCTCTACCTCAACCACAACAAACTCAAGCTGTTGGATCGGCAGTCCCTCCCTGCCCCACTGAGGAACGGCAGTGCCCTCCAGTTGCTCACTCTGCATGCCAACCCCTTTGACTGCTCCTGCGACACTTCCTGGTTTGCAGACTTCCTGCGTGCCAGCCAGGTGGAGATCCTCCTTCTTACCACTGGCGTACACTGTGGTTTCCCCGAGTCGCAGCAAGGGGCTAGTGTTTTGTCTATGGACCCCCGCTCCTGCCAGGAAATTTATGGCAGCCTGGCCTTCCTCTCTATTACCTTCCTGACTCTGGTGTTCACTGCCTTACCCCTACTCAGGCACCTCTACGGCTGGGATGTCTGGTATTGCTTCCAGGTGCTGTGGGCAGGACACAAGGGCTATTCCCAACTGCCTGGGGCAAACTTCCAGAGTCAGTATGATGCCTTTGTGGTCTTCGACACGGGCAACCACGCAGTGAGAGACTGGGTCTACAATGAGCTGCTGGTCCACCTGGAGAACGTGGGGCGGAGGAGGTTCTGTCTCTGCCTGGAGGAGAGAGATTGGGTTCCAGGTCTGTCCTGCATCGAGAATCTTCACAGTGCTGTCTATAGCAGCATGAAGACCGTGTTTGTGCTGACGAGCGGGGCAAGCGGCGAGGGAGGAAGGGTTAGCATAGTAAATGGGGTGACTCGCCAGGCCTTCTACATGGTGCAGCAGAGGCTGCTGGATGAAAAGGTGGACGTGGCGGTGTTGGTTCTGCTGGACGAGGTGTTTCCCAAGCTGAAATACCTGCAGCTGAGGAAGAGGCTCTGCAGGAAGTCTGTTCTGTCCTGGCCCAGGAACCCTCAGGCCCAGCCACTGTTCTGGAACCACATGAAGACAGCGCTGGCCTCCGACAACATCCGCTCCTACGACAGCAACGTCAACGAGAGCTTCATATAGGTGGGTCGATCCACAAACAGAGTGCCTTTTATGTCGTTGTGACATTGTCTGTAAATGTTGATAGAATACTCAATGAAAGAGTTGGATAACATGCAGTACATCTATAACTACACTAAACCATGTTAGAAATTCCAATACTAGTGTGTTTTCATTCAAATAAAATCCCCATTTTGGC

Function

symbol description
tlr9 Predicted to enable pattern recognition receptor activity. Acts upstream of or within antibacterial humoral response and toll-like receptor signaling pathway. Located in endoplasmic reticulum. Is expressed in blood; heart; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including allergic bronchopulmonary aspergillosis; cystic fibrosis; glomerulonephritis (multiple); hepatitis B; and lung disease (multiple). Orthologous to human TLR9 (toll like receptor 9).

NR:

description
toll-like receptor 9 precursor

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0034154 toll-like receptor 7 signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0003727 single-stranded RNA binding molecular_function

KEGG:

id description
K10161 TLR9, CD289; toll-like receptor 9

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001129991.2 True 3569 mRNA 0.51 4 65623175 65628493

Neighbor

gene id symbol gene type direction distance location
LOC110518541 LOC106566519 coding downstream 2883 65131650 ~ 65620292 (-)
wnt5a LOC106566524 coding downstream 493408 65094789 ~ 65129767 (-)
LOC110492545 lrtm1 coding downstream 631704 64984262 ~ 64991471 (-)
LOC110492544 NA coding downstream 934594 64682618 ~ 64688581 (-)
LOC110492543 LOC106566530 coding downstream 949555 64666724 ~ 64673620 (-)
apeh apeh coding upstream 4637 65633130 ~ 65644141 (-)
cttnbp2nlb cttnbp2nl coding upstream 31787 65660280 ~ 65704778 (-)
LOC110492562 LOC106568106 coding upstream 87218 65715711 ~ 65754610 (-)
ddx20 ddx20 coding upstream 641144 66269637 ~ 66276483 (-)
LOC110492566 LOC106566511 coding upstream 652463 66280956 ~ 66296439 (-)
G1401611 NA non-coding downstream 5930 65616811 ~ 65617245 (-)
G1401606 NA non-coding downstream 18283 65604227 ~ 65604892 (-)
G1401596 NA non-coding downstream 46276 65576408 ~ 65576899 (-)
G1401587 NA non-coding downstream 68366 65553392 ~ 65554809 (-)
G1401574 NA non-coding downstream 105631 65517258 ~ 65517544 (-)
G1401376 capza1 non-coding upstream 19903 65648396 ~ 65653934 (-)
G1401378 NA non-coding upstream 26124 65654617 ~ 65654855 (-)
G1401632 NA non-coding upstream 77254 65705747 ~ 65705961 (-)
G1401383 NA non-coding upstream 80132 65708625 ~ 65709149 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1174703 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1312719 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 1337182 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 1338628 64284207 ~ 64284547 (-)
G1400552 NA other downstream 1365742 64256926 ~ 64257433 (-)
G1401617 NA other upstream 6989 65635482 ~ 65636372 (-)
G1402686 srpk3 other upstream 797058 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 856408 66484901 ~ 66494667 (-)
G1403498 NA other upstream 1814928 67443421 ~ 67444179 (-)

Expression


Co-expression Network