LOC110492562 (LOC106568106)


Basic Information

Item Value
gene id LOC110492562
gene name LOC106568106
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65715711 ~ 65754610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947564.1
agggcttccaccatgcctttgccattttaatgtagtcaaagTACTCATCTGGTGGGGATTTCTACATGTTGtagcctcaatggtgctgcccacaGTGTCATAGAAGCTATAATGGCACATATATAAatatgagtcctctatctatctctattctctctcactctctgcaaaGAGTCGCCCGTTAACCCTCAAACTACCGAATAGCCCTTTAAAAAGGTGGAAGTAAAATAATTACACCATTCCTTTGTGGACCGCCATAATAttacagaagaagaagagagaattaCAGGTCGGTCAGAGCCGTCGGTCAGAGTCAAAAGCACAACAAAGCGGAGACACGATGTGGAACTTTCCTTCGTTCTCCACAGAGACATGGACTCTGGTAGCGACACTATTTGCTCTCTTCATGTGGTATGGGTATGCACCTTATGGATTCTTCAAGAAACTCGGCATCCAGGGACCTAAACCTCTCCCCTTCATAGGGACGTTTTTAGAGTACAAAAGGGGTTTCTTCATATTTGACAATGCCTGTTACCAGAAGTACGGCGATGTGtggggGGTATTTGATGGCAGACTGCCCATAATGGGTGTGATGGACACAGCCATGATCAAAACCATCCTGGTGAAGGAATGTTACTCTGTGTTTACCAACAGACGGGACTTTGGGTTGAACGGGGAGCTCCACGACGCTGTAACAACTGTAGAAGACGATGAGTGGAAGAGAATCCGcagcactctgtctccctccttcaccAGTGGACGACTCAAAGATATGTTCATGATAATGACTCAACACTCCAGAAACCTGGTGAAGTTTCTGCAGAAGAAGGTAGACACTGACGAGGTCCTGGAAGTTAAAGAaATCTTTGGGGCCTACAGTATGGACGTGGTGGCAAGTAGCGCGTTCAGTGTTGACATTGATTCTATCAACCAACCCAACGATCCCTTAGTTGTCAACATAAAGAAACTACTCAAATTCAACCTGTTAAATCCTCTCCTAATCTTAGTAGTGTTGTTCCCGTTTATGCGTCCGCTCCTGGAAAAGTGTAATGTCTCTTTCCTACCTGCTGGTGCTATGAAATTCTTCTATTCCTTCCTGAGGAAGATCAAAGCAGAGAGGAGCAAGAATGTACACAATACCAGAGTGGACTTAATGCAGCTGATGGTGGACTCTCAGATCCCACAGGACCACAGGTCCAAGGAGGTTGCACACAAAGggCTGACGGACCATGAGATCCTGTCCCAGGCGTTGACATACATCTTTGGGGGCTATGAGACCAGCAGCAGCACACTGGGTTTCCTATCCTACAACCTGGCAACAAACCCTGACGTCCAGGCTGCCCTGCAGGATGAGATCGACCAGATCTTCCCCGACAAGgcTCCACCCACCTATGAAGGGCTGATGCAGATGGAATATCTGGACATGGTCATCAACGAGACCTTGCGGGTGTATCCCATCATCAGCCGGCTAGAGAGGGTTGCCAAGACGACCGTGGAGGTGAATGGTGTGACCATCCCCAAGGGAACTGTTGTCATGATCCCAATCATGGTCCTTCACCACCACCCAACACACTGGCCCAAACCTGAAGTCTTCCGACCAGAGAGGTTCAGtaaggagaacagagagaacattgATCCCTACACCTTCCTTCCGTTTGGGATGGGGCCCAGGAACTGTATCGGCATGAGATTCGCCCTCCAGACCATTAAGCTGGTGATAGTAGAGATCCTCCAGAGGTTCAGTTTTGTCACCTGCAAGGAGACAGAAGTTCCTCTGGAGCTGTTTGACAACGGCTTCATCGCCCCAACGAAGCCCATCAAGCTGAAGCTGATCCCCCGTGTTGTGGCCCCCAGCCAGGATTGAGAGGAGAGGCACAGaggctacccaaccagccagtcaggttTCAAACTCCCACAGTCactcaatgcacacacacacgcacacacacacacgcacacacacacgcgcgcacacacacgcgcgcacacacacacgctcacaagcacacacacgcacacacgggcacacacacacacacagtggcgaCCCATCATCCAGGGTGTGTGGGGCTCTGTTTTTCGCCCCACCTGTTAACAAAAAAACAAGTATGATgatggcattaatacatgtcacatttcagtttgtaaacaatgtaaaaataataataattcagttaataaagccgcata
>XM_036947563.1
gggcttccaccatgcctttgccattttaatgtagtcaaagTACTCATCTGGTGGGGATTTCTACATGTTGtagcctcaatggtgctgcccacaGTGTCATAGAAGCTATAATGGCACATATATAAatatgagtcctctatctatctctattctctctcactctctgcaaaGAGTCGCCCGTTAACCCTCAAACTACCGAATAGCCCTTTAAAAAGGTGGAAGTAAAATAATTACACCATTCCTTTGTGGACCGCCATAATAttacagaagaagaagagagaattaCAGGTCGGTCAGAGCCGTCGGTCAGAGTCAAAAGCACAACAAAGCGGAGACACGATGTGGAACTTTCCTTCGTTCTCCACAGAGACATGGACTCTGGTAGCGACACTATTTGCTCTCTTCATGTGGTATGGGTATGCACCTTATGGATTCTTCAAGAAACTCGGCATCCAGGGACCTAAACCTCTCCCCTTCATAGGGACGTTTTTAGAGTACAAAAGGGGTTTCTTCATATTTGACAATGCCTGTTACCAGAAGTACGGCGATGTGtggggGGTATTTGATGGCAGACTGCCCATAATGGGTGTGATGGACACAGCCATGATCAAAACCATCCTGGTGAAGGAATGTTACTCTGTGTTTACCAACAGACGGGACTTTGGGTTGAACGGGGAGCTCCACGACGCTGTAACAACTGTAGAAGACGATGAGTGGAAGAGAATCCGcagcactctgtctccctccttcaccAGTGGACGACTCAAAGATATGTTCATGATAATGACTCAACACTCCAGAAACCTGGTGAAGTTTCTGCAGAAGAAGGTAGACACTGACGAGGTCCTGGAAGTTAAAGAaATCTTTGGGGCCTACAGTATGGACGTGGTGGCAAGTAGCGCGTTCAGTGTTGACATTGATTCTATCAACCAACCCAACGATCCCTTAGTTGTCAACATAAAGAAACTACTCAAATTCAACCTGTTAAATCCTCTCCTAATCTTAGTAGTGTTGTTCCCGTTTATGCGTCCGCTCCTGGAAAAGTGTAATGTCTCTTTCCTACCTGCTGGTGCTATGAAATTCTTCTATTCCTTCCTGAGGAAGATCAAAGCAGAGAGGAGCAAGAATGTACACAATACCAGAGTGGACTTAATGCAGCTGATGGTGGACTCTCAGATCCCACAGGACCACAGGTCCAAGGAGGTTGCACACAAAGggCTGACGGACCATGAGATCCTGTCCCAGGCGTTGACATACATCTTTGGGGGCTATGAGACCAGCAGCAGCACACTGGGTTTCCTATCCTACAACCTGGCAACAAACCCTGACGTCCAGGCTGCCCTGCAGGATGAGATCGACCAGATCTTCCCCGACAAGgcTCCACCCACCTATGAAGGGCTGATGCAGATGGAATATCTGGACATGGTCATCAACGAGACCTTGCGGGTGTATCCCATCATCAGCCGGCTAGAGAGGGTTGCCAAGACGACCGTGGAGGTGAATGGTGTGACCATCCCCAAGGGAACTGTTGTCATGATCCCAATCATGGTCCTTCACCACCACCCAACACACTGGCCCAAACCTGAAGTCTTCCGACCAGAGAGGTTCAGtaaggagaacagagagaacattgATCCCTACACCTTCCTTCCGTTTGGGATGGGGCCCAGGAACTGTATCGGCATGAGATTCGCCCTCCAGACCATTAAGCTGGTGATAGTAGAGATCCTCCAGAGGTTCAGTTTTGTCACCTGCAAGGAGACAGAAGTTCCTCTGGAGCTGTTTGACAACGGCTTCATCGCCCCAACGAAGCCCATCAAGCTGAAGCTGATCCCCCGTGTTGTGGCCCCCAGCCAGGATTGAGAGGAGAGGCACAGGTATACAGGACACTACCCTGTTAGTCTAGCCAAGTCGGTTTCTGCTTCAAATATATGGTTGGCATGGCAATGAGTAAATTGTCTAAAAGGCAAGGCAACCTTCCTATTGAGGTATGGAAAGGATCATCTTAGACTCATTGATATTCCAGGCTTATCCTCTGGAATTAGTACAATTCATTGATTTTATGGTGAAGAAACTACCCAACTAGCTATATTACTAAAATATTGACGTGTGTAGGCTTTTTGTATCCTATTTGCAGGAATCCCTTGAAATTAAGATGACTCATCTCAAGGGTCATGCAATGAGTATAAAGTGAATACAATATGGACAATTGTAGTAACTATGTGTGCCTTCATTtgttttataaaataatttatgtTCAGGCATTGAACAACCACAGATCACTAACTAACTTACCTGCAAGAGATTGCTGCAACACAATGTACAACCAATATATAATATATGACCATGAATTATCTAATGCTTTTACTGATGTAAGATAGTATCCCTCATATAACCCTCTTATAAAACTCACATACCATGTTTTGGAATGTGTTATGTAATGATTTAATCTGTAGTGTGATTCTAACAGTAATACTGCTGGACTGAAGTAAATGTTTTCTACCTGTAAGACTA
>TU1600363
AGTCTAGCCCAGTCCGTTTCTGCTTCAGTCAAACATGGTTGGCATGGCAACCTTCCTATTGAGGTATGGAAAGGATCATCTTAGACTCATTGATATTCCAGGCTTATCCTCTGGAATTAGTACAATTCATTGATTTTATGGTGAAGAAACTACCCAACTAGCTATATTACTAAAATATTGACGTGTGTAGGCTTTTTGTATCCTATTTGCAGGAATCCCTTGAAATTAAGATGACTCATCTCAAGGGTC
>TU1600365
TCCTTCCGTTTGGGATGGGGCCCAGGAACTGTATCGGCATGAGATTCGCCCTCCAGACCATTAAGCTGGTGACAGTAGAGATCCTCCAGAGCTTCAGTTTTGTCACCTGCAAGGAGACAGAAGTTCCTCTGGAGCTGTTTGACAACGGCTTCATCGCCCCAACGAAGCCCATCAAGCTGAAGCTGATCCCCCGTGTTGTGGCCCCCAGCCAGGATTGAGAGGAGAGGCACAGGTATACAGGACACTACCCTGTTAGTCTAGCCAAGTCGGTTTCTGCTTCAAATATATGGTTGGCATGGCAATGAGTAAATTGTCTAAAAGGCAAGGCAACCTTCCTATTGAGGTATGGAAAGGATCATCTTAGACTCATTGATATTCCAGGCTTATCCTCTGGAATTAGTACAATTCATTGATTTTATGGTGAAGAAACTACCCAACTAGCTATATTACTAAAATATTGACGTGTGTAGGCTTTTTGTATCCTATTTGCAGGAATCCCTTGAAATTAAGATGACTCATCTCAAGGGTC

Function

NR:

description
cytochrome P450 3A30-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947564.1 False 2190 mRNA 0.49 14 65715711 65740776
XM_036947563.1 False 2514 mRNA 0.45 13 65720167 65740775
TU1600363 False 249 lncRNA 0.39 2 65720507 65754363
TU1600365 True 529 TUCP 0.46 2 65720507 65754610

Neighbor

gene id symbol gene type direction distance location
cttnbp2nlb cttnbp2nl coding downstream 10933 65660280 ~ 65704778 (-)
apeh apeh coding downstream 71570 65633130 ~ 65644141 (-)
tlr9 tlr9 coding downstream 87218 65623175 ~ 65628493 (-)
LOC110518541 LOC106566519 coding downstream 95419 65131650 ~ 65620292 (-)
wnt5a LOC106566524 coding downstream 585944 65094789 ~ 65129767 (-)
ddx20 ddx20 coding upstream 528861 66269637 ~ 66276483 (-)
LOC110492566 LOC106566511 coding upstream 540180 66280956 ~ 66296439 (-)
b4galt3 b4galt3 coding upstream 562813 66303589 ~ 66308067 (-)
bgnb bgn coding upstream 579646 66320422 ~ 66345643 (-)
si:dkey-32e6.6 LOC106566508 coding upstream 641227 66382003 ~ 66421064 (-)
G1401383 NA non-coding downstream 6562 65708625 ~ 65709149 (-)
G1401632 NA non-coding downstream 9750 65705747 ~ 65705961 (-)
G1401378 NA non-coding downstream 60856 65654617 ~ 65654855 (-)
G1401376 capza1 non-coding downstream 61777 65648396 ~ 65653934 (-)
G1401611 NA non-coding downstream 98466 65616811 ~ 65617245 (-)
G1401667 NA non-coding upstream 104561 65845337 ~ 65847509 (-)
G1401692 NA non-coding upstream 142450 65883226 ~ 65883433 (-)
G1401702 NA non-coding upstream 162783 65903559 ~ 65903883 (-)
G1401717 NA non-coding upstream 192122 65932898 ~ 65933267 (-)
G1402442 NA non-coding upstream 228789 65969565 ~ 65969914 (-)
G1401617 NA other downstream 79339 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1267239 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1405255 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 1429718 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 1431164 64284207 ~ 64284547 (-)
G1402686 srpk3 other upstream 684775 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 744125 66484901 ~ 66494667 (-)
G1403498 NA other upstream 1702645 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 3050413 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 3462510 69203286 ~ 69207158 (-)

Expression


Co-expression Network